BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29320.1
Length=1546
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921968 jgi|Araly1|921968|scaffold_103249.1 2523 0.0
Ahg473143 jgi|Araly1|473143|fgenesh2_kg.1__3097__AT1G29330.1 158 1e-37
> Ahg921968 jgi|Araly1|921968|scaffold_103249.1
Length=1534
Score = 2523 bits (1366), Expect = 0.0
Identities = 1476/1529 (97%), Gaps = 7/1529 (0%)
Strand=Plus/Plus
Query 18 TACGGCGGCGATAAAAAATGCCTCGAGTCATCCCTCCGGAGAATCTCGGTTGCCCACC-A 76
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 6 TACGGCGGCGATATAAAATGCCTCGAGTCATCCCTCCGGAGAATCTCGGTTGCCCACCGA 65
Query 77 TTCCGTGCTTTAACTTTTGACTCTCTCGGCTTAATAAAAGTGACTGAAGCTCGTGGTCAA 136
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 66 -TCCGTGCTTTAACCTTTGACTCTCTCGGCTTAATCAAAGTGACTGAAGCTCGTGGTAAA 124
Query 137 GAGAGAGGGATTCCGACTGTAGTGAACACATGGGGAGAGATGAATGCATCTAGAAGTGTT 196
|||||||| | |||||||||||| ||||||||||||||||||||||||||||| | ||||
Sbjct 125 GAGAGAGGTACTCCGACTGTAGTCAACACATGGGGAGAGATGAATGCATCTAGGACTGTT 184
Query 197 CTTGCTGCTTCCATTGATGACCGGTTAAGGAATCCGCTTTTGGCTGTTGCAAGAAAAGAT 256
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 185 CTTGCTGCTTCCATTGATGACCGGTTAAGGAATCCGCTTTTGGCCGTTGCAAGAAAAGAT 244
Query 257 GGCAATGTTGAGGTTATTAACCCTTGTAATGGTGATCTTCACTTCTCATACTCTGTATTT 316
||||||||||||||| |||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct 245 GGCAATGTTGAGGTTCTTAATCCTTGTAATGGTGATCTTCACTTTTCATACTCCGTATTT 304
Query 317 GGTGATGATGGTTGTTCCCCTGAGGATAACGAAATTTCTGCCCTGCACTTATTCAGGAAA 376
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 305 GGTGATGATGGTTGTTCCCCTGAGGATAACGAAATTTCTGCCCTGCACTTATTCAGAAAA 364
Query 377 AAGATAGATGATCAGACAGAAAGATCTTGCACATTGCTTACATGTACGAAAAAGGGAGAT 436
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 365 AAGATAGATGATCAGGCAGAAAGATCTTGCACATTGCTTACATGCACGAAAAAGGGAGAT 424
Query 437 GTGAGTCTCAGATCAGTTAAATTTCCAGATGCACATGGTAATTCCACGGATGATGCTTCT 496
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 425 GTGAGCCTCAGATCAGTTAAATTTCCAGATGCACATGGTGATTCCACGGATGATGCTTCT 484
Query 497 CCTAAAACATGGAAAGCATGTGGTTCTGGTGAAATATTGGTTGGTAAAGTGGATGGGAGC 556
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 CCTAAAACTTGGAAAGCATGTGGTTCTGGTGAAATATTGGTTGGTAAAGTGGATGGGAGC 544
Query 557 GAAAACTTCAGCTTATTTGGAGGGAAACGGGTTGAGGCCAATATATGGGATCTTGAACAA 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 GAAAACTTCAGCTTATTTGGAGGGAAACGGGTTGAGGCCAATATATGGGATCTTGAACAA 604
Query 617 TGTACAAAGATCTGGAGCGCGAAATGCCCTCCTAAGAACAATCTTGGAATCTTCACGCCT 676
||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 605 TGTACTAAGATCTGGAGCGCGAAATCCCCTCCTAAGGACAATCTTGGAATCTTCACGCCT 664
Query 677 ACCTGGTTCACTAGTGCTACGTTCTTGAGCAAGGATGATCACCGTAAATTTGTCACAGGA 736
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 665 ACCTGGTTCACTAGTGCTACGTTCTTGAGCAACGATGATCACCGTAAATTTGTCACGGGA 724
Query 737 ACCAAGTCTCACCAGGTCCGTCTTTATGACATTTCTACTCAACGTAGACCGGTCCTGTCC 796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 ACCAAGTCTCACCAGGTCCGTCTTTATGACATTTCTACTCAACGTAGACCGGTCCTGTCC 784
Query 797 TTTGATTTCCGTGAGACCGCTATTACATCAATTGCGGAAGACCCAGACGGTCATACTATC 856
|||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||
Sbjct 785 TTTGATTTCCGTGAGACCGCCATTACAGCAATCGCGGAAGACCCAGACGGTCATACTATC 844
Query 857 TATGTCGGGAATGCTTCTGCTGACCTAGCTTCCTTTGATATACGAACAGGAAAGCTGTTG 916
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 845 TATGTCGGGAATGCTTCTGCTGACCTCGCTTCCTTTGATATACGAACAGGAAAGCTGTTG 904
Query 917 GGAAGCTTTTTAGGAAAATGCTCTGGAAGCATAAGATCTGTGGTTAGACATCCACAGCAT 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 GGAAGCTTTTTAGGAAAATGCTCTGGAAGCATAAGATCTGTGGTTAGACATCCACAGCAT 964
Query 977 CAAGTGATAGCTTCTTGCGGGCT-GGACCGATATTTACGTGTTTATGACGTTAAGACACG 1035
|||||||||||||||||||| || ||||||||||||||| |||| |||||| ||||||||
Sbjct 965 CAAGTGATAGCTTCTTGCGG-CTTGGACCGATATTTACGGGTTTTTGACGTGAAGACACG 1023
Query 1036 CCAGCTCATTTCTGCGGTTTTCTTGAAGCAGCATCTTACAGGTCTTGTATTCGACTCGGG 1095
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1024 CCATCTCATTTCTGCGGTTTTCTTGAAGCAGCATCTTACAGGTCTTGTATTCGACTCAGG 1083
Query 1096 CTTTTCTGGAGAAGAGACAGCTGTAGCAAACACAGTGGCTGAGGCTGCCACAGAGGAGAA 1155
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1084 CTTTTCTGGAGAAGAGACAGCTGAAGCAAACACAGTGGCTGAGGCTGCGACAGAGGAGAA 1143
Query 1156 GATGACGATCATGGACCAGGAAGATGATGAAACAGAGAAGGCTCCTGTGAAAAGAAAGAA 1215
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1144 GATGACGATCATGGACCAGGAAGATGATGAAACAGAGGAGGCTCCTGTGAAAAGAAAGAA 1203
Query 1216 GTCAAAGAAAGAGAAACGCAGTAGAGAAATAGTCTTTGAGGGTGAAGACGATGAGGAGAA 1275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1204 GTCAAAGAAAGAGAAACGCAGTAGAGAAATAGTCTTTGAGGGTGAAGACGATGAGGAGAA 1263
Query 1276 TGAAGACGAGATTGAGAAGGCTCCGGTCaaaacaaaaaagtcaaagaaagagaaacgcag 1335
|||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1264 TGAAGACGAGTTTGAGAAGGCTCCTGTCAAAACAAAGAAGTCAAAGAAAGAGAAACGCAG 1323
Query 1336 tagagaaaaagtc-tct--gaaggtgaagagaaagacgagctaagaagcaagaagacacg 1392
||||||||| ||| ||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1324 TAGAGAAAAGGTCGTCTCTGAAGGTGAAGAGAAAGACGATTTAAGAAGCAAGAAGACACG 1383
Query 1393 agagcacaagaagaagaccaagatagtgaaacacaatcaagaagaCTAGGTTTAAGTTTT 1452
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1384 AGAGCACAAGAAGAAGACCAAGAAAGTGAAACACAATCAAGAAGACTAGGTTTAAGTTTT 1443
Query 1453 GAAGACACATTGTTAACTTGGCTCTGATCTGAGCTACAGTTTTGAACTAAACACTCGCAC 1512
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1444 GAAGACACATTGTTAACTTCGCTCTGATCTGAGCTACAGTTTTGAACAAAACACTCGCAC 1503
Query 1513 AAAAGAAACAGAGTTTGTGTGTTATCTAT 1541
|||||||||||||||||||||||||||||
Sbjct 1504 AAAAGAAACAGAGTTTGTGTGTTATCTAT 1532
Score = 95.3 bits (51), Expect = 1e-18
Identities = 70/78 (90%), Gaps = 5/78 (6%)
Strand=Plus/Plus
Query 1190 GAGAAGGCTCCTGTGAAAAGAAAGAAGTCAAAGAAAGAGAAACGCAGTAGAGAAATAG-T 1248
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||| || |
Sbjct 1277 GAGAAGGCTCCTGTCAAAACAAAGAAGTCAAAGAAAGAGAAACGCAGTAGAGAAA-AGGT 1335
Query 1249 C-T-T-TGAGGGTGAAGA 1263
| | | ||| ||||||||
Sbjct 1336 CGTCTCTGAAGGTGAAGA 1353
> Ahg473143 jgi|Araly1|473143|fgenesh2_kg.1__3097__AT1G29330.1
Length=1159
Score = 158 bits (85), Expect = 1e-37
Identities = 91/94 (97%), Gaps = 0/94 (0%)
Strand=Plus/Minus
Query 1453 GAAGACACATTGTTAACTTGGCTCTGATCTGAGCTACAGTTTTGAACTAAACACTCGCAC 1512
||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1159 GAAGACACATTGTTAACTTTGCTCTGATCCGAGCTACAGTTTTGAACAAAACACTCGCAC 1100
Query 1513 AAAAGAAACAGAGTTTGTGTGTTATCTATAAAGA 1546
||||||||||||||||||||||||||||||||||
Sbjct 1099 AAAAGAAACAGAGTTTGTGTGTTATCTATAAAGA 1066
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57897172400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5