BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29330.1
Length=1186
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473143 jgi|Araly1|473143|fgenesh2_kg.1__3097__AT1G29330.1 1664 0.0
Ahg921968 jgi|Araly1|921968|scaffold_103249.1 158 1e-37
> Ahg473143 jgi|Araly1|473143|fgenesh2_kg.1__3097__AT1G29330.1
Length=1159
Score = 1664 bits (901), Expect = 0.0
Identities = 1105/1195 (92%), Gaps = 47/1195 (4%)
Strand=Plus/Plus
Query 1 GTTCCAGATTGCCACGTCATCGTCTCCTCTCAACGAGTTTCTGCAAAACCTGAAACGTGC 60
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
Sbjct 1 GTTCCAGATTGCCACGTCATCGTCTCCTCGGAACGAATTTCTGCAAAACCTGAAAC--G- 57
Query 61 TGCACCT-TGC-ctctctttct-ctctcttccttcgtttctctctcGATTTGAAGAGAG- 116
|||| || | | || ||| || |||||||| |||||||||||||||||||||||||||
Sbjct 58 TGCA-CTCT-CTCTTTCTCGCTCCTCTCTTCATTCGTTTCTCTCTCGATTTGAAGAGAGA 115
Query 117 -AAAATTCGTTCGATTTCGTTTTCTCTTCTTCTTTTGGATTTTCCCGGAAAATTTTGGAA 175
|||||||||||||||||||||| | ||| | | ||||||||||||||
Sbjct 116 AAAAATTCGTTCGATTTCGTTTT-T-TTC--C----------T---GGAAAATTTTGGAA 158
Query 176 TCG--G-TGAGTCTCTATCGAT-TACTGGTCAACCATGAATATCTTTAGATTTGCTGGCG 231
||| | |||||||||| || | | ||||||||||||||||||||||||||||||||||
Sbjct 159 TCGTTGTTGAGTCTCTACCG-TGTTGTGGTCAACCATGAATATCTTTAGATTTGCTGGCG 217
Query 232 ATATGAGTCACTTGATCAGTGTCTTAATCCTTCTTCTCAAAATCTACGCGACGAAATCTT 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 218 ATATGAGTCACTTGATCAGTGTCTTAATCCTTCTTCTCAAAATCTACGCGACGAAATCTT 277
Query 292 GCGCTGGAATCTCTCTCAAGACTCAAGAGCTCTATGCGCTTGTGTTCTTGACTCGGTACT 351
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 278 GCGCTGGAATTTCTCTCAAGACTCAAGAGCTATATGCGCTTGTGTTCTTGACTCGGTACT 337
Query 352 TGGATCTGTTTACGGATTATGTATCTCTGTACAACAGCATCATGAAGATTGTCTTCATTG 411
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 338 TGGATCTGTTTACGGATTATGTATCTCTGTACAACAGCGTGATGAAGATTGTCTTCATTG 397
Query 412 CCAGCTCTTTGGCTATCGTTTGGTGTATGCGTAGGCATCCACTTGTGAGGAGGTCATACG 471
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 398 CTAGCTCTTTGGCTATCGTTTGGTGTATGCGTAGGCATCCACTAGTGAGGAGGTCATACG 457
Query 472 ATAAGGACCTGGACACATTTCGTCATCAGTATGTTGTGTTAGCGTGTTTTGTACTGGGAC 531
||||||||||||||||||||||||| || |||||||||||||| |||||||| |||| ||
Sbjct 458 ATAAGGACCTGGACACATTTCGTCACCAATATGTTGTGTTAGCATGTTTTGTTCTGGCAC 517
Query 532 TTATCCTGAATGAAAAATTCACAGTT-CAAGAGGTGTTCTGGGCGTTTTCTATCTACTTA 590
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 518 TTATCCTGAATGAAAAATTCAC-GTTTCAAGAGGTGTTCTGGGCGTTTTCTATCTACTTA 576
Query 591 GAGGCAGTTGCTATCCTTCCCCAGTTGGTTCTGCTACAAAGAAGTGGGAATGTCGACAAT 650
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 577 GAGGCAGTTGCTATCCTTCCCCAGTTGGTTCTGCTACAGAGAAGTGGGAATGTCGACAAT 636
Query 651 TTGACTGGGCAATATGTTGTCTTTCTCGGGGCGTATCGGGGACTCTATATTATCAACTGG 710
|||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct 637 TTGACTGGGCAATATGTTGTCTTTCTCGGGGCGTATCGTGGACTTTATATCATCAACTGG 696
Query 711 ATCTATCGCTATTTCACAGAAGATCATTTCACTAGATGGATTGCTTGTGTGTCTGGTCTT 770
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 697 ATCTATCGCTATTTCACAGAAGATCATTTCTCTAGATGGATTGCTTGTGTGTCCGGTCTT 756
Query 771 GTCCAAACAGCTCTCTATGCGGATTTCTTCTACTACTACTACATAAGCTGGAAAACCAAC 830
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 757 GTCCAAACAGCTCTCTACGCGGATTTCTTCTACTACTACTACATAAGCTGGAAAACCAAC 816
Query 831 ACCAAACTTAAGCTTCCGGCTTGAAAAGAACCCGAAtttttttGCAATAGTATCAAAATC 890
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 817 ACCAAACTTAAGCTTCCGGCTTGAAAAGAACCCGAATTTTTTTGCAATAGTATCAATATC 876
Query 891 CAGGAAGTTACAGCAATGGTGACATTAGAAAAGAAAGACATGGTTAACATTTGGGTCCTC 950
||||||||||||| | | || ||||||| |||||||||||| |||||| | |||
Sbjct 877 CAGGAAGTTACAG---T--T-ACC---GAAAAGAGAGACATGGTTAATATTTGGTTTCTC 927
Query 951 CCTCTTTCTAACAATGAGTTGAAAATTGAATGATGCAGGATTGTTGTTTAAAATGTGttt 1010
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 928 CCTCTTTCTAACAATGAGTTGAAA-TTGAATGATGCAGGATTGTTGTTTAAAATGT-TCC 985
Query 1011 tttttttAGTCTTT-AATGCACATTGTAACTTTCCCGACGATTTTAGACATTGAGAAGAG 1069
|||||| ||||||| ||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 986 TTTTTT-AGTCTTTTAATGCACATTGTAACTTTCCCAACGATTTTAGACCTTGAGAAGAG 1044
Query 1070 GCATCGTTTTATCAAAACTAGTCTTTATAGATAACACACAAACTCTGTTTCTTTTGTGCG 1129
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1045 GCTTAGTTTTATCAAAACTAGTCTTTATAGATAACACACAAACTCTGTTTCTTTTGTGCG 1104
Query 1130 AGTGTTTAGTTCAAAACTGTAGCTCAGATCAGAGCCAAGTTAACAATGTGTCTTC 1184
||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1105 AGTGTTTTGTTCAAAACTGTAGCTCGGATCAGAGCAAAGTTAACAATGTGTCTTC 1159
> Ahg921968 jgi|Araly1|921968|scaffold_103249.1
Length=1534
Score = 158 bits (85), Expect = 1e-37
Identities = 89/91 (98%), Gaps = 0/91 (0%)
Strand=Plus/Minus
Query 1096 ATAGATAACACACAAACTCTGTTTCTTTTGTGCGAGTGTTTAGTTCAAAACTGTAGCTCA 1155
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1532 ATAGATAACACACAAACTCTGTTTCTTTTGTGCGAGTGTTTTGTTCAAAACTGTAGCTCA 1473
Query 1156 GATCAGAGCCAAGTTAACAATGTGTCTTCAA 1186
||||||||| |||||||||||||||||||||
Sbjct 1472 GATCAGAGCGAAGTTAACAATGTGTCTTCAA 1442
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44260706637
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5