BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29350.1
Length=2963
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473146 jgi|Araly1|473146|fgenesh2_kg.1__3100__AT1G29370.1 4252 0.0
Ahg321144 jgi|Araly1|321144|fgenesh1_pm.C_scaffold_4001201 1273 0.0
> Ahg473146 jgi|Araly1|473146|fgenesh2_kg.1__3100__AT1G29370.1
Length=2838
Score = 4252 bits (2302), Expect = 0.0
Identities = 2691/2868 (94%), Gaps = 69/2868 (2%)
Strand=Plus/Plus
Query 33 AGAGATATATCTTCCCTTGAGCTTCCTTGGTGTTCTTCGTATT-G--TCGTCGCGACTGA 89
||||||||||||||||||| |||||||| | ||| || | || | | |||||||||||
Sbjct 1 AGAGATATATCTTCCCTTGTGCTTCCTTCTTCTTCGTCTTCTTCGTATTGTCGCGACTGA 60
Query 90 GAGAAGGCCACAAAAGCTTCGTTTATTTCCTTCAGATCCGATATAGTgagagagagagag 149
||||| ||||||||||||||||||||||||||||||||| | ||||| |||||
Sbjct 61 GAGAA-GCCACAAAAGCTTCGTTTATTTCCTTCAGATCC-----A---AGAGATTGAGAG 111
Query 150 agagagGCAGCTTACGGCGGATAAATATGAGCAGC-A-G-C-AAG--GT---CGGC---- 196
|||||||||||||||||| ||| |||||||||||| | | | | || ||||
Sbjct 112 AGAGAGGCAGCTTACGGCAGATTAATATGAGCAGCAAGGTCGGCGTTGTCGGCGGCGGAA 171
Query 197 G-G-CGGAGC----AAGG---A-AA-GGAATTCAGGATATTCCGTCAGGGTCTAGAAAAA 245
| | |||||| |||| | || ||||||||||||||||||||||||||||||||||
Sbjct 172 GTGCCGGAGCAAGGAAGGCCAATAATGGAATTCAGGATATTCCGTCAGGGTCTAGAAAAA 231
Query 246 TAGTACAAAGCTTGACGGAAATTGTAAACTCTCCTGAGGCTGAGATCTATGCTATGCTTA 305
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 232 TAGTACAAAGCTTGAAGGAAATTGTAAACTCTCCCGAGGCTGAGATCTATGCTATGCTTA 291
Query 306 AAGAGTGCAATATGGATCCTAACGAAACCGTTAGTCGCCTCCTCTCTCAAGATCCATTTC 365
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 292 AAGAGTGCAATATGGATCCTAACGAAACCGTTAATCGCCTCCTCTCTCAAGATCCGTTTC 351
Query 366 ACGAGGTaaagagcaagaaagaaaagaagaaagagaCTAGGGATATATCAGATTCTCGGC 425
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 352 ATGAGGTAAAGAGCAAGAAAGAAAAGAAGAAAGAGACTAGGGATATATCGGATTCCCGGC 411
Query 426 CGCGTGGTGCTAATAACACCTACAACCGTGGTGCTAGAGGTGGTTCTGCTCGTTACGCCG 485
||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||
Sbjct 412 CGCGTGGTGCTAATAACACGTACAACCGTGGTGCTAGAGGTGGTTCTGATCGTTATGCCG 471
Query 486 GACGAAGTGGATCTACCCATTTCAGCTCTACTGATTCTGGAAACTTCCAGGGAAAATCTA 545
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 472 GACGAAGTGGATCTACCCATTTCAGCTCTACTGATTCTGGAAACTTCCAAGGAAAATCTG 531
Query 546 CAAATAAGAAAGAAAGTGGAACGCAGGGTTATACAAGTTCTTGGTCTTCTGCTTCTGGAG 605
|||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 532 CAAACAAGAAAGAAAGTGGAACGCAGGATTATTTGAGTTCTTGGTCTTCTGCTTCTGGAG 591
Query 606 TGGCGAACACCTATCAAACACCACACAGTGAACCCATTGCTATGGAAAACAAATTGCCTC 665
||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||
Sbjct 592 TGGCGAACACCTATCAAACACCACACAGTGAACCCGTTGCTACGGAAAATAAATTGCCTT 651
Query 666 CTGTTACCTTGGGAGATGGAATATCATCATCAAAGTCAGCTTCTGGACATCAAACTGCAT 725
||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 652 CTGTTCCCTCGGGAGATGGAATATCATCATCACAGTCAGCTTCTGGACATCAAACTGCAT 711
Query 726 GGTTTGGAGCTCCAGGCCAGAGGTCTATGGCTGAAG-TTGTGAAGATGGGTAGACCACAG 784
||||||||||||||||||| ||||| ||||||| || ||||||||||||||| |||||||
Sbjct 712 GGTTTGGAGCTCCAGGCCAAAGGTCCATGGCTG-AGATTGTGAAGATGGGTATACCACAG 770
Query 785 AACAAGACAACAAAGCAAAATGTCAATGTGGGTTCTGAGATAAATCATGAACACGAAGTT 844
||||||||||| | ||||||||||||| || || |||||||||||||||| |||||||||
Sbjct 771 AACAAGACAACGAGGCAAAATGTCAATATGCGTCCTGAGATAAATCATGAGCACGAAGTT 830
Query 845 AATGCAAATCAGCAGGCCCCTGTTAAAGATGAATGGCCGTCGATTGAGAAGCCGCTGGCT 904
| |||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 831 AGTGCAAATCAGCAGGTCCCTGTTAGAGATGAATGGCCGTCGATTGAGAAGCCACTGGCT 890
Query 905 CCTAGTACATCTTCTTTATCAGTAGCACCAGCAGAATCAGAAGTACGCAATGGTCTAGCT 964
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 891 CCTAGTACATCTTCTGTATCAGTAGCACCAGCAGAATCAGAAGTATGCAATGGTCCAGCT 950
Query 965 GATTTCCAATCCGATAGAGGAGATCAATATCTGAAGGACCGGTTAGAAAATATTCATATA 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 951 GATTTCCAATCCGATAGAGGAGATCAATATCTGAAGGACCGGTTAGAAAATATACATATA 1010
Query 1025 GCAGAAAGTGGCCCGTCTGAAAGTCGTGGGGTCGATCATGTGCAAGCCGACTCTGTTCAA 1084
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1011 GCAGAAAATGGCCCGTCTGAAAGTCGTGGAGTCGATCATGTGCAAGCCGACTCTGTTCAA 1070
Query 1085 GAAGATGAATCTGTAGTTTCGTCAGAAATTGATGATAATCCATATCAGACACAGAGCCAT 1144
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1071 GAAGATGAATCTGGAGTTTCGTCTGAAATTGATGATAATCCATATCAGACACAGAGCCAT 1130
Query 1145 CCAGTAGAGCACCACAAAGATGAAGATGATGTTTCATCTGGTTCAGCCAGTTTTCAACAA 1204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 CCAGTAGAGCACCACAAAGATGAAGATGATGTTTCATCTGGTTCAGCCAGTTTTCAACAA 1190
Query 1205 CTAGATAGTCATGATCAAGAAGTCTCACATGAAGAGGATAGACCTGCTGTTGTAATTCCA 1264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 CTAGATAGTCATGATCAAGAAGTCTCACATGAAGAGGATAGACCTGCTGTTGTAATTCCA 1250
Query 1265 AACCATTTGCTAATTCACACAGAAGAATGCGCGCAATTAAGTTTTGGAAGCTTTGGAGGT 1324
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1251 AACCATTTGCTAATTCACACAGAAGAATGCTCGCAATTAAGTTTTGGAAGCTTTGGAGGT 1310
Query 1325 TTTGGATCAAGGCCTTTGAGCAACAGCGTAGAAGCGACTTCTGATGTAGCTCCACAAATC 1384
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||
Sbjct 1311 TTTGGATCAAGGCCTTTGAGCAACAATGTAGAAGAGACTTCTGATGTAGCTCCACAGATC 1370
Query 1385 GAACATTCAGATGCAAGAAATACTGAGTTCTATGGAGATGAACATCTGGGAAGTACAACC 1444
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1371 GAACATTCAGATGCAAGAAATACTGAGTTTTATGGAGATGAACATCTTGGAAGTACAACC 1430
Query 1445 AATGGAAATATGGTCCACACACCTGCTACTGGAAATTATGATGATTCTTTAGAAACGAGG 1504
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1431 AATGGAAATATGGTCCACACACCTGCTACTGGAAATTATGATGATTCTTTAGAATCTAGG 1490
Query 1505 CGAGAGGTGTTGAAGCAAGAAAACTCTGAGGGCGCTCAGGAGCACCAGTACACATTTACC 1564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1491 CGAGAGGTGTTGAAGCAAGAAAACTCTGAGGGCGCTCAGGAGCACCAGTACACATTTGCC 1550
Query 1565 CAGTCTGAGCAAGGGTATGCGTATGAAAATGCTAAGCAGCAGCAGATGAATTCTGCATAT 1624
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1551 CAGTCTGAGCAAGGTTATGCGTATGAAAATGCTAAGCAGCAGCAGATGAATACTGCATAT 1610
Query 1625 GATGCCTCACACACAAATTCACAGAATCAGATGCATAATCTTGATTCATTATCAAATGTG 1684
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1611 GATGCCTCACACACAAATGCACAGAATCAGATGCATAATCTTGCTTCATTATCAAATGTG 1670
Query 1685 ATGCAGGGGTATTCACACTCAGTTCCCAACACTTTATTGGCACAAACAGCACAAAATGCG 1744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1671 ATGCAGGGGTATTCACACTCAGTTCCCAACACTTTATTGGCACAAACAGCACAAAATGCG 1730
Query 1745 AGGGAACTTGACTTCCAGTATTCACCTTTCTCAGCTCAACAGTCTATGCAATCAAGAACT 1804
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1731 AGGGAACTTGACTTCCAGTTTTTACCTTTCTCAGCTCAACAGTCTATGCAATCAAGAACT 1790
Query 1805 AGCAACAATGCCTCATCACTTGGTGGCCAAAGCATTTCAATGCCAGAGGCGCTCCGAGGC 1864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1791 AGCAACAATGCCTCATCACTTGGTGGCCAAAGCATTTCAATGCCAGAGGCGCTCCGAGGC 1850
Query 1865 AGTGGAATTCCGGCAACACAGCCAACCCAGCAAACACTACCTGGTGCTAATATCGCTACT 1924
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1851 AGTGGAATTTCGGCAACACAGCCAACCCAGCAAACATTACCTGGTGCTAATATCGCTACT 1910
Query 1925 GGACCTGCTCTTCCTCAGCAGCTTCCAATGCATTACTCTCAACCCACATTACCTCTAACA 1984
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1911 GGACCTGCTCTTCCTCAGCAGCTTCCAATGCATTACTCTCAACCCACATTGCCTCTAACA 1970
Query 1985 CACTATGCAAACATGATCGGTTATCCTCTAATGCCTCAGAATTATCCATACATGCCATCT 2044
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1971 CACTATGCAAACATGATCGGTTATCCTCTAATGCCTCAGAATTATCCATACATGCCATCT 2030
Query 2045 GCTTTCCAGCAAACATTTGCTGGTAATAGTGCATACCACCAGCAACTAGCTGCATTGCTT 2104
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 2031 GCTTTCCAGCAAACATTTGCTGGTAACAACGCATACCACCAGCAACTAGCTGCATTGCTT 2090
Query 2105 CCGCAGTACAAAACCAATGTCTCTCCCGGTAATTTGCCTCAGTCTGCAACAGCGCCTGCC 2164
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 2091 CCGCAGTACAAAACCAATGTGTCTCCCGGTAATTTGCCTCAGTCTGCAACAGCGCCTACC 2150
Query 2165 TCTGCTTATGGATTTGGAAACTCGACCAATGTCGGATCTGCCGGAAACTTCCCTCTTAAC 2224
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2151 TCTGCTTATGGATTTGGAAACTCGACCAATGTTGGATCTGCCGGAAACTTCCCTCTTAAC 2210
Query 2225 CAACAGTCTGCTACTACCGGTACAACGCTTGGTTATGAAGATGTTCTTAGTTCTCAATAC 2284
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2211 CAACAGTCTGCTCCTACCGGTACAACGCTTGGTTATGAAGAAGTTCTTAGTTCTCAATAC 2270
Query 2285 AAAGAGAATCATCTGTTGGCACTTCAGCAGCAGCAGCAACA--A-CAGCAACATCAACA- 2340
||||||||||||||||||||||||||||||||||| ||||| | |||||||| |||||
Sbjct 2271 AAAGAGAATCATCTGTTGGCACTTCAGCAGCAGCAACAACAGCAACAGCAACAGCAACAG 2330
Query 2341 -A-CAGAACGAAAACTCGGCGATGTGGCATCAGGGTCATGGTTCCAGAACCATGTCAGGT 2398
| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 2331 CAACAGAACGAAAACTCGGCGATGTGGCATCATGGTCATGGTTCCAGAAACATGTCAGGT 2390
Query 2399 GTCCCGACTAACACGTATTacaacctccaagcacaacaacaactgcaactacaacaccag 2458
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 2391 GTCCCGACTAATACGTATTACAACCTCCAAGCACAACAACAACTACAACTACAACAACAG 2450
Query 2459 caacaacaacagcaggctcagcaagcagcGGGAGGGTATCGCCAAGCTCAGCAACAACAG 2518
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2451 CAACAACAACAG--G-CTCAGCAAGCAGCGGGAGGGTATCGCCAAGCTCAGCAACAACAG 2507
Query 2519 CATTATGGATCTCATGGATACCCAAATTATTATCAGTCTCAGACCGAAATGTCACTCGAG 2578
||||| ||||||||||| ||||||||||||||||||||||| || ||||||||||| |||
Sbjct 2508 CATTACGGATCTCATGGCTACCCAAATTATTATCAGTCTCAAACTGAAATGTCACTGGAG 2567
Query 2579 CGCCAGCAGCAAAACCCTAGGGATGGTG---CTGGGTCTCAGGCTGGTCAACCGTCGAAT 2635
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2568 CGCCAGCAGCAAAACCCTAGGGATGGTGGTACTGGGTCTCAGGCTGGTCAACCGTCGAAT 2627
Query 2636 CAATCTCAGCAGCAGCTCTGGCAAAACTCTTACTAAATAAAGAAAGAGAGTGGGTTTTTT 2695
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2628 CAAACCCAGCAGCAGCTCTGGCAAAACTCTTACTAAATAAAGAAAGAGAGTGGGTTTTTT 2687
Query 2696 -CAGCTTCTTTCTCTCGCTTATAGAGGTTTGTGTGG-CGAGTCTGAAGAGGAAATATGGT 2753
|||||||||||| ||| |||||||||||||||||| ||||||||||||||||| |
Sbjct 2688 TCAGCTTCTTTCTTTCGGTTATAGAGGTTTGTGTGGGCGAGTCTGAAGAGGAAA-A---- 2742
Query 2754 CGTGTTCTAAAATGTAACTTATCATCATCTTTTGTCTCCTCTGTTAACTTAGGGAACATG 2813
| |||||||||||||||| |||| | |||||||||||||||||||| | |
Sbjct 2743 --------A---TGTAACTTATCATCATATTTTCTTTCCTCTGTTAACTTAGGGAA-ACG 2790
Query 2814 CAACTCTGATTTCATCAATGCAACTTCAGAAATGAAACtttttttttt 2861
|||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 2791 CAACTCTGATTTCATCAATGCAACTTTAGAAATGAAACCTTTTTTTTT 2838
> Ahg321144 jgi|Araly1|321144|fgenesh1_pm.C_scaffold_4001201
Length=2598
Score = 1273 bits (689), Expect = 0.0
Identities = 1736/2221 (78%), Gaps = 154/2221 (7%)
Strand=Plus/Plus
Query 221 GATATTCCGTCAGGGTCTAGAA-AA-ATAGTACAAAGCTTGACGGAAATTGTAAACT-CT 277
||||||||||||||||| ||| || || || ||||| |||| ||||||||||||| |
Sbjct 67 GATATTCCGTCAGGGTC--GAAGAAGATGGTTCAAAGTTTGAAAGAAATTGTAAACTGC- 123
Query 278 CCTGAGGCTGAGATCTATGCTATGCTTAAAGAGTGCAATATGGATCCTAACGAAACCGTT 337
|||||||| ||||||||||| |||| || || || || ||||||||||| ||| ||||
Sbjct 124 CCTGAGGCAGAGATCTATGCCGTGCTCAAGGACTGTAACATGGATCCTAATGAAGCCGTC 183
Query 338 AGTCGCCTCCTCTCTCAAGATCCATTTCACGAGGTaaagagcaagaaagaaaagaagaaa 397
|||||||||||||| |||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct 184 AGTCGCCTCCTCTCCCAAGATCCTTTTCACGAGGTGAAGAGCAAAAAAGAAAAGAAGAAA 243
Query 398 gagaCTAGGGATATATCAGATTCTCGGCCG-CGTGGTGCTA-A-TAACACCTACAACCGT 454
|||| |||||||||| | ||||| | |||| || | |||| | ||||| |||||||||
Sbjct 244 GAGATTAGGGATATACCGGATTC-CCGCCGACG-AG-GCTATAGTAACAATTACAACCGT 300
Query 455 GGTG-CTAGAGGTGGTTCTGCTCGTTACGCCGGACGAAGTGGATCTACCCATTTCAGCTC 513
|| | |||||||| ||||| |||||| || ||||||| |||| | |||| |||||||||
Sbjct 301 GG-GATTAGAGGTGTTTCTGATCGTTATGCTGGACGAAATGGAGCCACCCCTTTCAGCTC 359
Query 514 TACTGATTCTGGAAACTTCCAGGGAAAATCTACAAATAAGAAAGAAAGTGGAACGCAGGG 573
|| ||| || |||| |||||| |||||| ||||||| |||| || || || | ||||
Sbjct 360 TAGTGACTCAGGAAGCTTCCAAGGAAAAACTACAAACAAGAGGGAGAGCGGGATGCAGAC 419
Query 574 TTATACAAGTTCTTGGTCTTCTGCTTCTGGAGTGGCGA-ACACCTATCAAACACCACACA 632
| || || |||||| |||||| | ||||| || ||| |||| |||| | ||||||||
Sbjct 420 TCATGCAGGTTCTTATTCTTCTACGTCTGGCGTATCGAGCCACC-ATCAGATACCACACA 478
Query 633 GTGAACCCATTGCTATGGAAAACAAATTGCCTCCTGTTACCTTGGGAGATGGAATATCAT 692
|||| | |||||| |||| ||| ||| ||||||||| ||| | || ||||||||
Sbjct 479 GTGATTCTGTTGCTAAAGAAAGTAAAACGCCAACTGTTACCTCGGGTGGTGAAATATCAT 538
Query 693 CATCAAAGTCA-GCTT-CTGGACATCAAACTGCATGGTTTGGAGCTCCAGGCCAGAGGTC 750
|||| | | | | || ||||||||||||||||||||||||||||| |||| ||| |||
Sbjct 539 CATC-ACTTTATG-TTACTGGACATCAAACTGCATGGTTTGGAGCTTCAGGTCAGCTGTC 596
Query 751 TATGGCTGA-AGTTGTGAAGATGGGTAGACCACAGAACAAGACAACAAAG-C--A-AAA- 804
||||||||| | ||||||||||||||||||| || |||||||||||||| | | |||
Sbjct 597 TATGGCTGACA-TTGTGAAGATGGGTAGACCTCATAACAAGACAACAAACTCTCAGAAAA 655
Query 805 -TGTCAATGTGGGTTCTGAGATAAATCATGAACACGAAGTTAATGCAAATCAGCAGGCCC 863
|||| || || |||||||| ||||||| || || ||| | ||||||||| || | |
Sbjct 656 ATGTCGATATGCGTTCTGAGGTAAATCACGAGCATGAAAATGCTGCAAATCAACATGTAC 715
Query 864 CTGTTAAAGATGAATGGCCGTCGATTGAGAAGCC-GCTGGCTCCTAGTACATCTTCTTTA 922
|||| |||||||||||||| ||||| |||||||| | ||||| |||| || |||||| ||
Sbjct 716 CTGTGAAAGATGAATGGCCCTCGATGGAGAAGCCAG-TGGCTGCTAGCACTTCTTCTGTA 774
Query 923 TCAGTAGCACCAGCAGAATCAGA-AGTACGCAATGGTCTAGCTGATTTCCAATCC-GATA 980
|||||||||||| | || ||||| | || ||||| ||| ||| |||||||||||| | ||
Sbjct 775 TCAGTAGCACCAACTGAGTCAGAGA-TATGCAATAGTCCAGCAGATTTCCAATCCAG-TA 832
Query 981 GAGGAGATCAATATCTGAAGGACCGGTTAGAAAATATTCATATAGCAGAAAGTGG-CCC- 1038
|| |||||||| ||| ||||| || ||| ||| | | ||| || ||||| ||| |||
Sbjct 833 GAAGAGATCAACATCCGAAGGGCCAGTTGGAAGACACACATTTAAAAGAAAATGGTCCCT 892
Query 1039 --G----TCT-G-AA-AG-TCGTGGG--GTC-GATCA-TGT-GCAAGCCGACTCTGTTCA 1083
| ||| | || || || || | | | || || ||| || | || |||||||
Sbjct 893 TTGGGAATCTTGGAAGAGATCATGTGCAGCCTGA-CACTGTAGCTGGTGGAG-CTGTTCA 950
Query 1084 AGAAGATGAATCTGTAGTTTCGTCAGAA-ATTGATGATAATCCATA----T-C-AGACAC 1136
|||||||| |||| ||| || || || || ||||||||||| || | | | ||||
Sbjct 951 GGAAGATGACTCTGGAGTGTCATCTGAGTAT-GATGATAATCCTTACAGATACCAAACAC 1009
Query 1137 AGAGCCATCCAGTAGAGCACCAC-AAAGATGAAGATGATGTTTCATCTGGTT-CAGCCAG 1194
||| | || || |||| || | ||||||||||| || |||| |||| || | ||||
Sbjct 1010 AGAAAAACCCTGTTGAGCCCC-CGAAAGATGAAGACGAAGTTTTGTCTG-TTGCTGCCAA 1067
Query 1195 TTTTCAACAACT--AG-ATAGT---C-ATGATCAAGAAGTC-TCACATGAAGAGGATAGA 1246
||||| | || || |||| | |||||||| | || || ||||| || ||||||
Sbjct 1068 CCTTCAAGA-CTTGAGCATAGAGAACCATGATCAATAC-TCCTCTCATGATGATGATAGA 1125
Query 1247 CCTGCTGTTGTAATTCCAAACCATTTGCTAATTCACACAGAAGAATGCGCGCAATTAAGT 1306
|||||||| || |||||| | ||| ||| |||||| |||||||| ||| | || |||||
Sbjct 1126 CCTGCTGTCGTGATTCCAGATCATCTGCAAATTCATACAGAAGAGTGCTCACAGTTAAGC 1185
Query 1307 TTTGGAAGCTTTGGAGGTTTTGGATCAAGGCCTTTGAGCAACAGCGTAGAAGCGACTTCT 1366
|||||||| |||||||| ||||||||||||||||||||||||||| |||||| | |||||
Sbjct 1186 TTTGGAAGTTTTGGAGGCTTTGGATCAAGGCCTTTGAGCAACAGCTTAGAAGAGGCTTCT 1245
Query 1367 GATGTAGCTCCACAAATCGAACATTCAGATGCAAGAAATACTGAGTTCTATGGAGATGAA 1426
|||||||||||||| || |||| | | ||||| |||||| | ||||||||||||||||||
Sbjct 1246 GATGTAGCTCCACAGATTGAACGTACTGATGCTAGAAATTCGGAGTTCTATGGAGATGAA 1305
Query 1427 CATCTGGGAAGTACAACCAATGGAAATATGGTCCACACACCTGCTACTGGA-AATTATGA 1485
||||| ||||| | ||||||| |||||||||| | || || ||| | ||||||||
Sbjct 1306 CATCTAGGAAGCATGTCCAATGGGCATATGGTCCATGCGTCTACTGCTG-ACAATTATGA 1364
Query 1486 TGATTCTTTAGAA-A-CGAGGCGAGAGGTGTTGAAGCAAGAAAACTCTGAGGGCGCTCA- 1542
|||||||| |||| | | || |||||||| ||| || ||||||| |||| ||||||
Sbjct 1365 TGATTCTTCAGAATATC-AG-CGAGAGGTTTTGTTGCCAGAAAACCCTGAAACCGCTCAT 1422
Query 1543 --GGAGCACCAGTACACATTTACCCAGTCTGAGCAAGGGTATGCGTATGAAAATGCTAAG 1600
|||| |||| ||| | ||| | ||||| || | || ||||| ||||||||| | |||
Sbjct 1423 CAGGAGAACCATTACTCGTTTGCTCAGTCGGATCCAGATTATGCATATGAAAATACCAAG 1482
Query 1601 CAGCAGCAG-ATGAATTCTGCATATGATGCCTCACACACAA--ATTCAC-AGAATCAGAT 1656
||||||| | || ||| |||| |||||||||||| |||| || || | || |||||
Sbjct 1483 CAGCAGCTGGAT-AAT---GCATTTGATGCCTCACAGACAAGCATG-ACTA-AA-CAGAT 1535
Query 1657 GCATAATCTTGATTCATTATCAAATGTGATGCAGGGGTATTCACACTCAGTTCCCAACAC 1716
||| |||||| ||||||| ||||||||||||| ||||||||| ||||| |||| |||||
Sbjct 1536 GCAGCATCTTGCTTCATTAACAAATGTGATGCAAGGGTATTCAAACTCAATTCCAAACAC 1595
Query 1717 TTTATTGGCACAAACAGCACAAAATGCGAGGGAACTTGA-CTTCCAGTATTCAC-CTTTC 1774
| |||||||||| |||||||| | ||| ||||| ||||| |||| ||||||| | |||||
Sbjct 1596 TCTATTGGCACAGACAGCACAGAGTGCAAGGGAGCTTGAACTTC-AGTATTC-CTCTTTC 1653
Query 1775 TCAG-C-TCAACAGTCTATGCAATCAAGAACTAGCAACAATGCCTCATCACTTGGTGGCC 1832
||| | | | |||||||||| ||||||| ||||| || || | |||| |||||||
Sbjct 1654 CCAGGCGT-A-CAGTCTATGCCGTCAAGAA---GCAACGATACC--A-CACTAGGTGGCC 1705
Query 1833 AAAGCATTTCAATGCCAGAGGCGCTCCGAGGCAGTGGAATTCCG--GCAACA-C--AGCC 1887
|||||||||| ||||||||||| ||| |||| |||| | | | |||||| | || |
Sbjct 1706 AAAGCATTTCCATGCCAGAGGCACTCAGAGGTGGTGG--TGCTGTTGCAACAACCCAGTC 1763
Query 1888 AACCCAGCAAACACT-ACCTGGTGCTAATATCGCTACTGGACCTGCTCTTCCTCAGCAGC 1946
|| |||||| | ||| ||| ||||| ||||| || |||||||| || |||||||||||
Sbjct 1764 AAGCCAGCAGA-ACTTACCCGGTGCCAATATTGCAACTGGACCAGCAATTCCTCAGCAGA 1822
Query 1947 TTCCAATGCAT---TACTCTCAACCCACATTACCTCTAACACACTATGCAAACATGATCG 2003
|| |||||||| ||||||||||||||||| ||||| || |||||| | |||||||||
Sbjct 1823 TTGCAATGCATCCATACTCTCAACCCACATTGCCTCTGACTCACTATCCCAACATGATCA 1882
Query 2004 GTTATCCTCTAATGCCTCAGAATTATCCATACATGCCATCTG-CTTTCCAGCAAACATTT 2062
|||||||| | |||||||||| || || ||||| ||||| | ||||||||||| |||||
Sbjct 1883 GTTATCCTTTGATGCCTCAGAGCTACCCTTACATTCCATC-GACTTTCCAGCAAGCATTT 1941
Query 2063 GCTGGTAATAG-TGCATACCACCAG-CAACTAGCTGCAT-TGCTTCCGCAGTACAAAACC 2119
|||||||| | | ||||||||||| || || ||||| | ||||||| || || |||| |
Sbjct 1942 GCTGGTAACAACT-CATACCACCAGTCA-CTTGCTGC-TCTGCTTCCACATTATAAAAAC 1998
Query 2120 AATGTCTCTCC-CG-GTAATTTGCCTCAGTCTGCAACAGCGCCTGC--C-TC-T--GCTT 2171
|| || ||| | |||||||||||||||| ||||| | ||||| | || | || |
Sbjct 1999 AACA-CT-TCCGCCAGTAATTTGCCTCAGTCAGCAACTTCCCCTGCTTCCTCCTCTGCCT 2056
Query 2172 ATGGATTTGGAAACTCGACCAATGTCGGATCTGCCGGAAACTTCCCTCTTAACCAACA-- 2229
|||| |||| ||||||| |||||| | | ||||||||||||| ||||||||||||
Sbjct 2057 ATGGGGTTGGGAACTCGAGCAATGTTGAA---GCCGGAAACTTCCTTCTTAACCAACAAC 2113
Query 2230 --GTCTGCTACTACCGGTACAACGCTTGGTTATGAAGATGTTCTTAGTTCT-CAATACAA 2286
||| ||| |||| || |||| || |||||||||| | || ||| || ||||||||
Sbjct 2114 ATGTC-GCTCCTACTGGGGCAACATTTAGTTATGAAGACGCCCTGAGT-CTACAATACAA 2171
Query 2287 AGAGAAT--C-ATCTGTTGGCA-CTTCAGCAGCAGCAGCAACAACAGCAACATCAACAAC 2342
| |||| | |||| ||| | ||||||||||||||||| ||||| || || |||||||
Sbjct 2172 ACAGAACAACTATCTATTGT-ATCTTCAGCAGCAGCAGCATCAACAACAGCAGCAACAAC 2230
Query 2343 A 2343
|
Sbjct 2231 A 2231
Score = 99.0 bits (53), Expect = 2e-19
Identities = 96/116 (83%), Gaps = 6/116 (5%)
Strand=Plus/Plus
Query 2312 CAGCAGCAGCAACAACAGCAACATCAACAACAGAACGAAAACTCGGCGATGTGGCAT-CA 2370
||||||||||||||||| ||||| ||||||||||| ||||||| | ||||||| | |
Sbjct 2269 CAGCAGCAGCAACAACAACAACAACAACAACAGAATGAAAACTTTCCTATGTGGC-TAAA 2327
Query 2371 GGGTCATGGTTC-CAGAACCATGTCAGGTGTCCCGA-CTAACACGTATTacaacct 2424
|| | ||| || || ||||||||| |||||||||| | ||||| |||||||||||
Sbjct 2328 TGGACCTGGCTCTCA-AACCATGTCGGGTGTCCCGAGC-AACACATATTACAACCT 2381
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111871049565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5