BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29370.1
Length=2860
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473146 jgi|Araly1|473146|fgenesh2_kg.1__3100__AT1G29370.1 4226 0.0
Ahg321144 jgi|Araly1|321144|fgenesh1_pm.C_scaffold_4001201 1273 0.0
> Ahg473146 jgi|Araly1|473146|fgenesh2_kg.1__3100__AT1G29370.1
Length=2838
Score = 4226 bits (2288), Expect = 0.0
Identities = 2689/2871 (94%), Gaps = 73/2871 (3%)
Strand=Plus/Plus
Query 30 AGAGATATATCTTCCCTTGAGCTTCCTTGGTGTTCTTCGTATT-G--TCGTCGCGACTGA 86
||||||||||||||||||| |||||||| | ||| || | || | | |||||||||||
Sbjct 1 AGAGATATATCTTCCCTTGTGCTTCCTTCTTCTTCGTCTTCTTCGTATTGTCGCGACTGA 60
Query 87 GAGAAGGCCACAAAAGCTTCGTTTATTTCCTTCAGATCCGATATAGTgagagagagagag 146
||||| ||||||||||||||||||||||||||||||||| | ||||| |||
Sbjct 61 GAGAA-GCCACAAAAGCTTCGTTTATTTCCTTCAGATCC---------A-AGAGATTGAG 109
Query 147 agagagagGCAGCTTACGGCGGATAAATATGAGCAGC-A-G-C-AAG--GT---CGGC-- 195
|||||||||||||||||||| ||| |||||||||||| | | | | || ||||
Sbjct 110 AGAGAGAGGCAGCTTACGGCAGATTAATATGAGCAGCAAGGTCGGCGTTGTCGGCGGCGG 169
Query 196 --G-G-CGGAGC----AAGG---A-AA-GGAATTCAGGATATTCCGTCAGGGTCTAGAAA 242
| | |||||| |||| | || ||||||||||||||||||||||||||||||||
Sbjct 170 AAGTGCCGGAGCAAGGAAGGCCAATAATGGAATTCAGGATATTCCGTCAGGGTCTAGAAA 229
Query 243 AATAGTACAAAGCTTGACGGAAATTGTAAACTCTCCTGAGGCTGAGATCTATGCTATGCT 302
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 230 AATAGTACAAAGCTTGAAGGAAATTGTAAACTCTCCCGAGGCTGAGATCTATGCTATGCT 289
Query 303 TAAAGAGTGCAATATGGATCCTAACGAAACCGTTAGTCGCCTCCTCTCTCAAGATCCATT 362
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 290 TAAAGAGTGCAATATGGATCCTAACGAAACCGTTAATCGCCTCCTCTCTCAAGATCCGTT 349
Query 363 TCACGAGGTaaagagcaagaaagaaaagaagaaagagaCTAGGGATATATCAGATTCTCG 422
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 350 TCATGAGGTAAAGAGCAAGAAAGAAAAGAAGAAAGAGACTAGGGATATATCGGATTCCCG 409
Query 423 GCCGCGTGGTGCTAATAACACCTACAACCGTGGTGCTAGAGGTGGTTCTGCTCGCTACGC 482
||||||||||||||||||||| |||||||||||||||||||||||||||| ||| || ||
Sbjct 410 GCCGCGTGGTGCTAATAACACGTACAACCGTGGTGCTAGAGGTGGTTCTGATCGTTATGC 469
Query 483 CGGACGAAGTGGATCTACCCATTTCAGCTCTACTGATTCTGGAAACTTCCAGGGAAAATC 542
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 470 CGGACGAAGTGGATCTACCCATTTCAGCTCTACTGATTCTGGAAACTTCCAAGGAAAATC 529
Query 543 TACAAATAAGAAAGAAAGTGGAACGCAGGGTTATACAAGTTCTTGGTCTTCTGCTTCTGG 602
| |||| |||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 530 TGCAAACAAGAAAGAAAGTGGAACGCAGGATTATTTGAGTTCTTGGTCTTCTGCTTCTGG 589
Query 603 AGTGGCGAACACCTATCAAACACCACACAGTGAACCCGTTGCTACGGAAAACAAATTGCC 662
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 590 AGTGGCGAACACCTATCAAACACCACACAGTGAACCCGTTGCTACGGAAAATAAATTGCC 649
Query 663 TCCTGTTACCTTGGGAGATGGAATATCATCATCACAGTCAGCTTCTGGACATCAAACTGC 722
| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 TTCTGTTCCCTCGGGAGATGGAATATCATCATCACAGTCAGCTTCTGGACATCAAACTGC 709
Query 723 ATGGTTTGGAGCTCCAGGCCAGAGGTCTATGGCTGAAG-TTGTGAAGATGGGTAGACCAC 781
||||||||||||||||||||| ||||| ||||||| || ||||||||||||||| |||||
Sbjct 710 ATGGTTTGGAGCTCCAGGCCAAAGGTCCATGGCTG-AGATTGTGAAGATGGGTATACCAC 768
Query 782 AGAACAAGACAACAAAGCAAAATGTCAATATGGGTTCTGAGATAAATCATGAACACAAAG 841
||||||||||||| | |||||||||||||||| || |||||||||||||||| ||| |||
Sbjct 769 AGAACAAGACAACGAGGCAAAATGTCAATATGCGTCCTGAGATAAATCATGAGCACGAAG 828
Query 842 TTAGTGCAAATCATCAGGCCCCTGTTAAAGATGAATGGCCGTCGATTGAGAAGCCGCTGG 901
||||||||||||| |||| |||||||| ||||||||||||||||||||||||||| ||||
Sbjct 829 TTAGTGCAAATCAGCAGGTCCCTGTTAGAGATGAATGGCCGTCGATTGAGAAGCCACTGG 888
Query 902 CTCCTAGTACATCTTCTTTATCAGTAGCACCAGCAGAATCAGAAGTACGCAATGGTCCAG 961
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 889 CTCCTAGTACATCTTCTGTATCAGTAGCACCAGCAGAATCAGAAGTATGCAATGGTCCAG 948
Query 962 CTGATTTCCAATCCGATAGAGGAGATCAATATCTGAAGGACCGGTTAGAAAATATTCATA 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 949 CTGATTTCCAATCCGATAGAGGAGATCAATATCTGAAGGACCGGTTAGAAAATATACATA 1008
Query 1022 TAGCAGAAAGTGGCCCTTCTGAAAGTCGTAAG-GTTGATCATGTGCAAGCCGACTCTGTT 1080
||||||||| |||||| |||||||||||| | || ||||||||||||||||||||||||
Sbjct 1009 TAGCAGAAAATGGCCCGTCTGAAAGTCGT-GGAGTCGATCATGTGCAAGCCGACTCTGTT 1067
Query 1081 CAAGAAGATGAATCTGTAGTTTCGTCAGAAATTGATGATAATCCATATCAGACACAGAGC 1140
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1068 CAAGAAGATGAATCTGGAGTTTCGTCTGAAATTGATGATAATCCATATCAGACACAGAGC 1127
Query 1141 CATCCAGTAGAGCACCACAAAGATGAAGATGATGTTTCATCTGGTTCAGCCAGTTTTCAA 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 CATCCAGTAGAGCACCACAAAGATGAAGATGATGTTTCATCTGGTTCAGCCAGTTTTCAA 1187
Query 1201 CAACTAGATAGTCATGATCAAGAAGTCTCACATGAAAAGGATAGACCTGCTGTTGTAATT 1260
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1188 CAACTAGATAGTCATGATCAAGAAGTCTCACATGAAGAGGATAGACCTGCTGTTGTAATT 1247
Query 1261 CCAAACCATTTGCTAATTCACACAGAAGAATGCGCGCAATTAAGTTTTGGAAGCTTTGGA 1320
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1248 CCAAACCATTTGCTAATTCACACAGAAGAATGCTCGCAATTAAGTTTTGGAAGCTTTGGA 1307
Query 1321 GGTTTTGGATCAAGGCCTTTGAGCAACAGCGTAGAAGCGACTTCTGATGTAGCTCCACAA 1380
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 1308 GGTTTTGGATCAAGGCCTTTGAGCAACAATGTAGAAGAGACTTCTGATGTAGCTCCACAG 1367
Query 1381 ATCGAACATTCAGATGCAAGAAATACTGAGTTCTATGGAGATGAACATCTGGGAAGTACA 1440
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1368 ATCGAACATTCAGATGCAAGAAATACTGAGTTTTATGGAGATGAACATCTTGGAAGTACA 1427
Query 1441 ACCAATGGAAATATGGTCCACACACCTGCTACTGGAAATTATGATGATTCTTTAGAAACG 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1428 ACCAATGGAAATATGGTCCACACACCTGCTACTGGAAATTATGATGATTCTTTAGAATCT 1487
Query 1501 AGGCGAGAGGTGTTGAAGCAAGAAAACTCTGAGGGCGCTCAGGAGCACCAGTACACATTT 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1488 AGGCGAGAGGTGTTGAAGCAAGAAAACTCTGAGGGCGCTCAGGAGCACCAGTACACATTT 1547
Query 1561 ACCCAGTCTGAGCAAGGGTATGCGTATGAAAATGCTAAGCAGCAGCAGATGAATTCTGCA 1620
|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 1548 GCCCAGTCTGAGCAAGGTTATGCGTATGAAAATGCTAAGCAGCAGCAGATGAATACTGCA 1607
Query 1621 TATGATGCCTCACACACAAATTCACAGAATCAGATGCATAATCTTGATTCATTATCAAAT 1680
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 1608 TATGATGCCTCACACACAAATGCACAGAATCAGATGCATAATCTTGCTTCATTATCAAAT 1667
Query 1681 GTGATGCAGGGGTATTCACACTCAGTTCCCAACACTTTATTGGCACAAACAGCACAAAAT 1740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1668 GTGATGCAGGGGTATTCACACTCAGTTCCCAACACTTTATTGGCACAAACAGCACAAAAT 1727
Query 1741 GCGAGGGAACTTGACTTCCAGTATTCACCTTTCTCAGCTCAACAGTCTATGCAATCAAGA 1800
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1728 GCGAGGGAACTTGACTTCCAGTTTTTACCTTTCTCAGCTCAACAGTCTATGCAATCAAGA 1787
Query 1801 ACTAGCAACAATGCCTCATCACTTGGTGGCCAAAGCATTTCAATGCCAGAGGCGCTCCGA 1860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1788 ACTAGCAACAATGCCTCATCACTTGGTGGCCAAAGCATTTCAATGCCAGAGGCGCTCCGA 1847
Query 1861 GGCAGTGGAATTCCGGCAACACAGCCAACCCAGCAAACACTACCTGGTGCTAATATCGCT 1920
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1848 GGCAGTGGAATTTCGGCAACACAGCCAACCCAGCAAACATTACCTGGTGCTAATATCGCT 1907
Query 1921 ACTGGACCTGCTCTTCCTCAGCAGCTTCCAATGCATTACTCTCAACCCACATTACCTCTA 1980
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1908 ACTGGACCTGCTCTTCCTCAGCAGCTTCCAATGCATTACTCTCAACCCACATTGCCTCTA 1967
Query 1981 ACACACTATGCAAACATGATCGGTTATCCTCTAATGCCTCAGAATTATCCATACATGCCA 2040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1968 ACACACTATGCAAACATGATCGGTTATCCTCTAATGCCTCAGAATTATCCATACATGCCA 2027
Query 2041 TCTGCTTTCCAGCAAACATTTGCTGGTAATAGTGCATACCACCAGCAACTAGCTGCATTG 2100
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 2028 TCTGCTTTCCAGCAAACATTTGCTGGTAACAACGCATACCACCAGCAACTAGCTGCATTG 2087
Query 2101 CTTCCGCAGTACAAAACCAATGTCTCTCCCGGTAATTTGCCTCAGTCTGCAACAGCGCCT 2160
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2088 CTTCCGCAGTACAAAACCAATGTGTCTCCCGGTAATTTGCCTCAGTCTGCAACAGCGCCT 2147
Query 2161 GCCTCTGCTTATGGATTTGGAAACTCGACCAATGTCGGATCTGCCGGAAACTTCCCTCTT 2220
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2148 ACCTCTGCTTATGGATTTGGAAACTCGACCAATGTTGGATCTGCCGGAAACTTCCCTCTT 2207
Query 2221 AACCAACAGTCTGCTACTACCGGTACAACGCTTGGTTATGACGATGTTCTTAGTTCTCAA 2280
||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||
Sbjct 2208 AACCAACAGTCTGCTCCTACCGGTACAACGCTTGGTTATGAAGAAGTTCTTAGTTCTCAA 2267
Query 2281 TACAAAGAGAATCATCTGTTGGCACTTCAGCAGCAGCAGCAACA--A-CAGCAACATCAA 2337
|||||||||||||||||||||||||||||||||||||| ||||| | |||||||| |||
Sbjct 2268 TACAAAGAGAATCATCTGTTGGCACTTCAGCAGCAGCAACAACAGCAACAGCAACAGCAA 2327
Query 2338 CA--A-CAGAACGAAAACTCGGCGATGTGGCATCAGGGTCATGGTTCCAGAACCATGTCA 2394
|| | ||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 2328 CAGCAACAGAACGAAAACTCGGCGATGTGGCATCATGGTCATGGTTCCAGAAACATGTCA 2387
Query 2395 GGTGTCCCGACTAACACGTATTacaacctccaagcacaacaacaactgcaactacaacac 2454
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2388 GGTGTCCCGACTAATACGTATTACAACCTCCAAGCACAACAACAACTACAACTACAACAA 2447
Query 2455 cagcaacaacaacagcaggctcagcaagcagcGGGAGGGTATCGCCAAGCTCAGCAACAA 2514
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 2448 CAGCAACAACAACAG--G-CTCAGCAAGCAGCGGGAGGGTATCGCCAAGCTCAGCAACAA 2504
Query 2515 CAGCATTATGGATCTCATGGATACCCAAATTATTATCAGTCTCAGACCGAAATGTCACTC 2574
|||||||| ||||||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 2505 CAGCATTACGGATCTCATGGCTACCCAAATTATTATCAGTCTCAAACTGAAATGTCACTG 2564
Query 2575 GAGCGCCAGCAGCAAAACCCTAGGGATGGTG---CTGGGTCTCAGGCTGGTCAACCGTCG 2631
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2565 GAGCGCCAGCAGCAAAACCCTAGGGATGGTGGTACTGGGTCTCAGGCTGGTCAACCGTCG 2624
Query 2632 AATCAATCTCAGCAGCAGCTCTGGCAAAACTCTTACTAAATAAAGAAAGAGAGTGG-ttt 2690
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2625 AATCAAACCCAGCAGCAGCTCTGGCAAAACTCTTACTAAATAAAGAAAGAGAGTGGGTTT 2684
Query 2691 ttttCAGCTTCTTTCTCTCGCTTATAGAGGTTTGTGTGG-CGAGTCTGAAGAGGAAATAT 2749
|||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||| |
Sbjct 2685 TTTTCAGCTTCTTTCTTTCGGTTATAGAGGTTTGTGTGGGCGAGTCTGAAGAGGAAA-A- 2742
Query 2750 GGTTGTGTTCTAAAATGTAACTTATCATCATCTTTTGTCTCCTCTGTTAACTTAGGGAAC 2809
| |||||||||||||||| |||| | ||||||||||||||||||||
Sbjct 2743 -----------A---TGTAACTTATCATCATATTTTCTTTCCTCTGTTAACTTAGGGAA- 2787
Query 2810 ATGCAACTCTGATTTCATCAATGCAACTTCAGAAATGAAACtttttttttt 2860
| ||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 2788 ACGCAACTCTGATTTCATCAATGCAACTTTAGAAATGAAACCTTTTTTTTT 2838
> Ahg321144 jgi|Araly1|321144|fgenesh1_pm.C_scaffold_4001201
Length=2598
Score = 1273 bits (689), Expect = 0.0
Identities = 1737/2222 (78%), Gaps = 156/2222 (7%)
Strand=Plus/Plus
Query 220 GATATTCCGTCAGGGTCTAGAA-AA-ATAGTACAAAGCTTGACGGAAATTGTAAACT-CT 276
||||||||||||||||| ||| || || || ||||| |||| ||||||||||||| |
Sbjct 67 GATATTCCGTCAGGGTC--GAAGAAGATGGTTCAAAGTTTGAAAGAAATTGTAAACTGC- 123
Query 277 CCTGAGGCTGAGATCTATGCTATGCTTAAAGAGTGCAATATGGATCCTAACGAAACCGTT 336
|||||||| ||||||||||| |||| || || || || ||||||||||| ||| ||||
Sbjct 124 CCTGAGGCAGAGATCTATGCCGTGCTCAAGGACTGTAACATGGATCCTAATGAAGCCGTC 183
Query 337 AGTCGCCTCCTCTCTCAAGATCCATTTCACGAGGTaaagagcaagaaagaaaagaagaaa 396
|||||||||||||| |||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct 184 AGTCGCCTCCTCTCCCAAGATCCTTTTCACGAGGTGAAGAGCAAAAAAGAAAAGAAGAAA 243
Query 397 gagaCTAGGGATATATCAGATTCTCGGCCG-CGTGGTGCTA-A-TAACACCTACAACCGT 453
|||| |||||||||| | ||||| | |||| || | |||| | ||||| |||||||||
Sbjct 244 GAGATTAGGGATATACCGGATTC-CCGCCGACG-AG-GCTATAGTAACAATTACAACCGT 300
Query 454 GGTG-CTAGAGGTGGTTCTGCTCGCTACGCCGGACGAAGTGGATCTACCCATTTCAGCTC 512
|| | |||||||| ||||| ||| || || ||||||| |||| | |||| |||||||||
Sbjct 301 GG-GATTAGAGGTGTTTCTGATCGTTATGCTGGACGAAATGGAGCCACCCCTTTCAGCTC 359
Query 513 TACTGATTCTGGAAACTTCCAGGGAAAATCTACAAATAAGAAAGAAAGTGGAACGCAGGG 572
|| ||| || |||| |||||| |||||| ||||||| |||| || || || | ||||
Sbjct 360 TAGTGACTCAGGAAGCTTCCAAGGAAAAACTACAAACAAGAGGGAGAGCGGGATGCAGAC 419
Query 573 TTATACAAGTTCTTGGTCTTCTGCTTCTGGAGTGGCGA-ACACCTATCAAACACCACACA 631
| || || |||||| |||||| | ||||| || ||| |||| |||| | ||||||||
Sbjct 420 TCATGCAGGTTCTTATTCTTCTACGTCTGGCGTATCGAGCCACC-ATCAGATACCACACA 478
Query 632 GTGAACCCGTTGCTACGGAAAACAAATTGCCTCCTGTTACCTTGGGAGATGGAATATCAT 691
|||| | ||||||| |||| ||| ||| ||||||||| ||| | || ||||||||
Sbjct 479 GTGATTCTGTTGCTAAAGAAAGTAAAACGCCAACTGTTACCTCGGGTGGTGAAATATCAT 538
Query 692 CATCACAGTCA-GCTT-CTGGACATCAAACTGCATGGTTTGGAGCTCCAGGCCAGAGGTC 749
|||||| | | | || ||||||||||||||||||||||||||||| |||| ||| |||
Sbjct 539 CATCAC-TTTATG-TTACTGGACATCAAACTGCATGGTTTGGAGCTTCAGGTCAGCTGTC 596
Query 750 TATGGCTGA-AGTTGTGAAGATGGGTAGACCACAGAACAAGACAACAAAG-C--A-AAA- 803
||||||||| | ||||||||||||||||||| || |||||||||||||| | | |||
Sbjct 597 TATGGCTGACA-TTGTGAAGATGGGTAGACCTCATAACAAGACAACAAACTCTCAGAAAA 655
Query 804 -TGTCAATATGGGTTCTGAGATAAATCATGAACAC-AAAGTTAGTGCAAATCATCAGGCC 861
|||| ||||| |||||||| ||||||| || || ||| | ||||||||| || |
Sbjct 656 ATGTCGATATGCGTTCTGAGGTAAATCACGAGCATGAAAATGC-TGCAAATCAACATGTA 714
Query 862 CCTGTTAAAGATGAATGGCCGTCGATTGAGAAGCC-GCTGGCTCCTAGTACATCTTCTTT 920
||||| |||||||||||||| ||||| |||||||| | ||||| |||| || |||||| |
Sbjct 715 CCTGTGAAAGATGAATGGCCCTCGATGGAGAAGCCAG-TGGCTGCTAGCACTTCTTCTGT 773
Query 921 ATCAGTAGCACCAGCAGAATCAGA-AGTACGCAATGGTCCAGCTGATTTCCAATCC-GAT 978
||||||||||||| | || ||||| | || ||||| ||||||| |||||||||||| | |
Sbjct 774 ATCAGTAGCACCAACTGAGTCAGAGA-TATGCAATAGTCCAGCAGATTTCCAATCCAG-T 831
Query 979 AGAGGAGATCAATATCTGAAGGACCGGTTAGAAAATATTCATATAGCAGAAAGTGG-CCC 1037
||| |||||||| ||| ||||| || ||| ||| | | ||| || ||||| ||| |||
Sbjct 832 AGAAGAGATCAACATCCGAAGGGCCAGTTGGAAGACACACATTTAAAAGAAAATGGTCCC 891
Query 1038 TT-------CT-G-AA-AG-TC--GTA-AGGTTGATCA-TGT-GCAAGCCGACTCTGTTC 1081
|| || | || || || || || ||| || ||| || | || ||||||
Sbjct 892 TTTGGGAATCTTGGAAGAGATCATGTGCAGCCTGA-CACTGTAGCTGGTGGAG-CTGTTC 949
Query 1082 AAGAAGATGAATCTGTAGTTTCGTCAGAA-ATTGATGATAATCCATA----T-C-AGACA 1134
| |||||||| |||| ||| || || || || ||||||||||| || | | | |||
Sbjct 950 AGGAAGATGACTCTGGAGTGTCATCTGAGTAT-GATGATAATCCTTACAGATACCAAACA 1008
Query 1135 CAGAGCCATCCAGTAGAGCACCAC-AAAGATGAAGATGATGTTTCATCTGGTT-CAGCCA 1192
|||| | || || |||| || | ||||||||||| || |||| |||| || | ||||
Sbjct 1009 CAGAAAAACCCTGTTGAGCCCC-CGAAAGATGAAGACGAAGTTTTGTCTG-TTGCTGCCA 1066
Query 1193 GTTTTCAACAACT--AG-ATAGT---C-ATGATCAAGAAGTC-TCACATGAAAAGGATAG 1244
||||| | || || |||| | |||||||| | || || ||||| | |||||
Sbjct 1067 ACCTTCAAGA-CTTGAGCATAGAGAACCATGATCAATAC-TCCTCTCATGATGATGATAG 1124
Query 1245 ACCTGCTGTTGTAATTCCAAACCATTTGCTAATTCACACAGAAGAATGCGCGCAATTAAG 1304
||||||||| || |||||| | ||| ||| |||||| |||||||| ||| | || |||||
Sbjct 1125 ACCTGCTGTCGTGATTCCAGATCATCTGCAAATTCATACAGAAGAGTGCTCACAGTTAAG 1184
Query 1305 TTTTGGAAGCTTTGGAGGTTTTGGATCAAGGCCTTTGAGCAACAGCGTAGAAGCGACTTC 1364
|||||||| |||||||| ||||||||||||||||||||||||||| |||||| | ||||
Sbjct 1185 CTTTGGAAGTTTTGGAGGCTTTGGATCAAGGCCTTTGAGCAACAGCTTAGAAGAGGCTTC 1244
Query 1365 TGATGTAGCTCCACAAATCGAACATTCAGATGCAAGAAATACTGAGTTCTATGGAGATGA 1424
||||||||||||||| || |||| | | ||||| |||||| | |||||||||||||||||
Sbjct 1245 TGATGTAGCTCCACAGATTGAACGTACTGATGCTAGAAATTCGGAGTTCTATGGAGATGA 1304
Query 1425 ACATCTGGGAAGTACAACCAATGGAAATATGGTCCACACACCTGCTACTGGA-AATTATG 1483
|||||| ||||| | ||||||| |||||||||| | || || ||| | |||||||
Sbjct 1305 ACATCTAGGAAGCATGTCCAATGGGCATATGGTCCATGCGTCTACTGCTG-ACAATTATG 1363
Query 1484 ATGATTCTTTAGAA-A-CGAGGCGAGAGGTGTTGAAGCAAGAAAACTCTGAGGGCGCTCA 1541
||||||||| |||| | | || |||||||| ||| || ||||||| |||| ||||||
Sbjct 1364 ATGATTCTTCAGAATATC-AG-CGAGAGGTTTTGTTGCCAGAAAACCCTGAAACCGCTCA 1421
Query 1542 ---GGAGCACCAGTACACATTTACCCAGTCTGAGCAAGGGTATGCGTATGAAAATGCTAA 1598
|||| |||| ||| | ||| | ||||| || | || ||||| ||||||||| | ||
Sbjct 1422 TCAGGAGAACCATTACTCGTTTGCTCAGTCGGATCCAGATTATGCATATGAAAATACCAA 1481
Query 1599 GCAGCAGCAG-ATGAATTCTGCATATGATGCCTCACACACAA--ATTCAC-AGAATCAGA 1654
|||||||| | || ||| |||| |||||||||||| |||| || || | || ||||
Sbjct 1482 GCAGCAGCTGGAT-AAT---GCATTTGATGCCTCACAGACAAGCATG-ACTA-AA-CAGA 1534
Query 1655 TGCATAATCTTGATTCATTATCAAATGTGATGCAGGGGTATTCACACTCAGTTCCCAACA 1714
|||| |||||| ||||||| ||||||||||||| ||||||||| ||||| |||| ||||
Sbjct 1535 TGCAGCATCTTGCTTCATTAACAAATGTGATGCAAGGGTATTCAAACTCAATTCCAAACA 1594
Query 1715 CTTTATTGGCACAAACAGCACAAAATGCGAGGGAACTTGA-CTTCCAGTATTCAC-CTTT 1772
|| |||||||||| |||||||| | ||| ||||| ||||| |||| ||||||| | ||||
Sbjct 1595 CTCTATTGGCACAGACAGCACAGAGTGCAAGGGAGCTTGAACTTC-AGTATTC-CTCTTT 1652
Query 1773 CTCAG-C-TCAACAGTCTATGCAATCAAGAACTAGCAACAATGCCTCATCACTTGGTGGC 1830
| ||| | | | |||||||||| ||||||| ||||| || || | |||| ||||||
Sbjct 1653 CCCAGGCGT-A-CAGTCTATGCCGTCAAGAA---GCAACGATACC--A-CACTAGGTGGC 1704
Query 1831 CAAAGCATTTCAATGCCAGAGGCGCTCCGAGGCAGTGGAATTCCG--GCAACA-C--AGC 1885
||||||||||| ||||||||||| ||| |||| |||| | | | |||||| | ||
Sbjct 1705 CAAAGCATTTCCATGCCAGAGGCACTCAGAGGTGGTGG--TGCTGTTGCAACAACCCAGT 1762
Query 1886 CAACCCAGCAAACACT-ACCTGGTGCTAATATCGCTACTGGACCTGCTCTTCCTCAGCAG 1944
||| |||||| | ||| ||| ||||| ||||| || |||||||| || |||||||||||
Sbjct 1763 CAAGCCAGCAGA-ACTTACCCGGTGCCAATATTGCAACTGGACCAGCAATTCCTCAGCAG 1821
Query 1945 CTTCCAATGCAT---TACTCTCAACCCACATTACCTCTAACACACTATGCAAACATGATC 2001
|| |||||||| ||||||||||||||||| ||||| || |||||| | |||||||||
Sbjct 1822 ATTGCAATGCATCCATACTCTCAACCCACATTGCCTCTGACTCACTATCCCAACATGATC 1881
Query 2002 GGTTATCCTCTAATGCCTCAGAATTATCCATACATGCCATCTG-CTTTCCAGCAAACATT 2060
|||||||| | |||||||||| || || ||||| ||||| | ||||||||||| ||||
Sbjct 1882 AGTTATCCTTTGATGCCTCAGAGCTACCCTTACATTCCATC-GACTTTCCAGCAAGCATT 1940
Query 2061 TGCTGGTAATAG-TGCATACCACCAG-CAACTAGCTGCAT-TGCTTCCGCAGTACAAAAC 2117
||||||||| | | ||||||||||| || || ||||| | ||||||| || || ||||
Sbjct 1941 TGCTGGTAACAACT-CATACCACCAGTCA-CTTGCTGC-TCTGCTTCCACATTATAAAAA 1997
Query 2118 CAATGTCTCTCC-CG-GTAATTTGCCTCAGTCTGCAACAGCGCCTGC--C-TC-T--GCT 2169
||| || ||| | |||||||||||||||| ||||| | ||||| | || | ||
Sbjct 1998 CAACA-CT-TCCGCCAGTAATTTGCCTCAGTCAGCAACTTCCCCTGCTTCCTCCTCTGCC 2055
Query 2170 TATGGATTTGGAAACTCGACCAATGTCGGATCTGCCGGAAACTTCCCTCTTAACCAACA- 2228
||||| |||| ||||||| |||||| | | ||||||||||||| ||||||||||||
Sbjct 2056 TATGGGGTTGGGAACTCGAGCAATGTTGAA---GCCGGAAACTTCCTTCTTAACCAACAA 2112
Query 2229 ---GTCTGCTACTACCGGTACAACGCTTGGTTATGACGATGTTCTTAGTTCT-CAATACA 2284
||| ||| |||| || |||| || ||||||| || | || ||| || |||||||
Sbjct 2113 CATGTC-GCTCCTACTGGGGCAACATTTAGTTATGAAGACGCCCTGAGT-CTACAATACA 2170
Query 2285 AAGAGAAT--C-ATCTGTTGGCA-CTTCAGCAGCAGCAGCAACAACAGCAACATCAACAA 2340
|| |||| | |||| ||| | ||||||||||||||||| ||||| || || ||||||
Sbjct 2171 AACAGAACAACTATCTATTGT-ATCTTCAGCAGCAGCAGCATCAACAACAGCAGCAACAA 2229
Query 2341 CA 2342
||
Sbjct 2230 CA 2231
Score = 99.0 bits (53), Expect = 2e-19
Identities = 96/116 (83%), Gaps = 6/116 (5%)
Strand=Plus/Plus
Query 2311 CAGCAGCAGCAACAACAGCAACATCAACAACAGAACGAAAACTCGGCGATGTGGCAT-CA 2369
||||||||||||||||| ||||| ||||||||||| ||||||| | ||||||| | |
Sbjct 2269 CAGCAGCAGCAACAACAACAACAACAACAACAGAATGAAAACTTTCCTATGTGGC-TAAA 2327
Query 2370 GGGTCATGGTTC-CAGAACCATGTCAGGTGTCCCGA-CTAACACGTATTacaacct 2423
|| | ||| || || ||||||||| |||||||||| | ||||| |||||||||||
Sbjct 2328 TGGACCTGGCTCTCA-AACCATGTCGGGTGTCCCGAGC-AACACATATTACAACCT 2381
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107947754330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5