BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29380.1
Length=1335
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912742 jgi|Araly1|912742|Al_scaffold_0001_2996 941 0.0
Ahg912743 jgi|Araly1|912743|Al_scaffold_0001_2997 217 2e-55
> Ahg912742 jgi|Araly1|912742|Al_scaffold_0001_2996
Length=693
Score = 941 bits (509), Expect = 0.0
Identities = 635/692 (92%), Gaps = 24/692 (3%)
Strand=Plus/Plus
Query 89 ATGACTCACCGTATAGCTCCTCGATGTTTCTCCACCATCATGCTTCTATGTCTTCTATAT 148
||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGACTCCCCACATAGCTCCTCGATGTTTCTCCACCATCATGCTTCTATGGCTTCTATAT 60
Query 149 ACTTCACCTCTAGATGTTATAGCTCAGGGTCAGGGAGGACAAGGTGATATACCAGTTGTT 208
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 ACTTCACCTCTAGATGTTATAGCTCAAGGTCAGGGAGGACAAGGTGATATACCAGTTGTT 120
Query 209 AATCCTACAGCTCCAGGTGGTAGTACCACAACACCAACCATAACACAACCGTCACCGCCT 268
|||||||||||||| || ||||||||||| |||||||||||||||||||| |||||||||
Sbjct 121 AATCCTACAGCTCCCGGGGGTAGTACCACCACACCAACCATAACACAACCATCACCGCCT 180
Query 269 TCCTTGACATTCCCAGG------T----C--CAACTACACCAACTGGTGGTTATCCACCT 316
||||||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct 181 TCCTTGACATTCCCAGGTCCAACTACACCAACAACTACACCAACTGGTGGTTATCCACCA 240
Query 317 CTTGACGGTACCACGCCAACCGGTGGTTACCCACCACTTTATGGTACTACACCGCCaggt 376
|||||||||||||| ||||| |||||||||||||| ||||||||||| ||||| ||||||
Sbjct 241 CTTGACGGTACCACACCAACTGGTGGTTACCCACCCCTTTATGGTACCACACCACCAGGT 300
Query 377 ggaggtgatgtaggtggtggaggaggcggatatggtggtggtacacctggtggaggtgga 436
|| |||||||||||||||||||||||||| |||||||||||| |||| | ||||||
Sbjct 301 GGTGGTGATGTAGGTGGTGGAGGAGGCGGTTATGGTGGTGGTGCACC---T---GGTGGA 354
Query 437 ggtggaggtggtgacactggtgcaggtgctggaggtgggggttatggt---ggtggtggt 493
|||||||||||||||||||||||||||| ||||||||| ||||||||| ||||| |||
Sbjct 355 GGTGGAGGTGGTGACACTGGTGCAGGTGGTGGAGGTGGCGGTTATGGTGGCGGTGGGGGT 414
Query 494 gacactggtgcaggtggaggtgttggtagtggccagtggtgTATAGCGAAAGCAAATGCT 553
|||||||||||||||||| | | ||||||||| |||||||||||||| ||||||||||||
Sbjct 415 GACACTGGTGCAGGTGGA-G-G-TGGTAGTGGTCAGTGGTGTATAGCAAAAGCAAATGCT 471
Query 554 TCGCCAACATCATTACAGGTGGCTTTAGATTACGCTTGTGGGTATGGAGGAGCTGATTGT 613
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 472 TCGCCAACATCATTACAGGTGGCTTTGGATTATGCTTGTGGGTATGGAGGAGCTGATTGT 531
Query 614 GGCCAGATACAACAAGGTGCAGCATGTTACGAGCCTAACACAATTCGTGACCATGCTTCC 673
||||||||||||||||||||||| |||||||||||||| || |||||||| |||||||||
Sbjct 532 GGCCAGATACAACAAGGTGCAGCCTGTTACGAGCCTAATACTATTCGTGATCATGCTTCC 591
Query 674 TTTGCTTTCAATAGTTATTACCAGAAGCATCCTGGTTCAGACAGCTGCAATTTTGGAGGG 733
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 592 TTTGCTTTCAATAGTTATTACCAGAAGCATCCTGGCTCAGACAGCTGCAATTTTGGAGGA 651
Query 734 GCAGCACAACTTACTAGCACAGATCCAAGTAA 765
||||||||||| || |||||||||||||||||
Sbjct 652 GCAGCACAACTCACCAGCACAGATCCAAGTAA 683
> Ahg912743 jgi|Araly1|912743|Al_scaffold_0001_2997
Length=1449
Score = 217 bits (117), Expect = 2e-55
Identities = 135/143 (94%), Gaps = 3/143 (2%)
Strand=Plus/Minus
Query 820 TCAAATGAGTCCACCAGATTTTAGTTCCCCACCATCATCTACATACCCACCGCCAATAAC 879
||||||||||||||||||||||| ||||||| | |||||||||||||||| ||||||||
Sbjct 1449 TCAAATGAGTCCACCAGATTTTAATTCCCCA-C--CATCTACATACCCACCCCCAATAAC 1393
Query 880 AACTCCAACTACAGGCATAACTGGCTCTGGACCACCCTTCGGCGTAGCAGAGCCAACAGG 939
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1392 AACTCCAACTACAGGCATAACTGGTTCTGGACCACCCTTCGGCGTAGCAGAGCCAACCGG 1333
Query 940 GCTTCCGAATTCAGCAACCTCTG 962
|||||||| ||||||||||||||
Sbjct 1332 GCTTCCGAGTTCAGCAACCTCTG 1310
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49941021270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5