BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29390.1
Length=823
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912743 jgi|Araly1|912743|Al_scaffold_0001_2997 941 0.0
> Ahg912743 jgi|Araly1|912743|Al_scaffold_0001_2997
Length=1449
Score = 941 bits (509), Expect = 0.0
Identities = 579/613 (94%), Gaps = 4/613 (1%)
Strand=Plus/Plus
Query 78 AAACCCTTTCTCGCTCTTAAACTCCGGCCTCGTCCTTCAAATATCTCCGGTCTAGGTCAC 137
|||||||||||| |||||||||||||||||||| | || || ||||| |||||||||||
Sbjct 646 AAACCCTTTCTCTCTCTTAAACTCCGGCCTCGTTCGTCCGATCTCTCCCGTCTAGGTCAC 705
Query 138 AGTACTAGTGTTGTTTGCTTCAATCCGT-TAAGGTTATCGGCTGATCGTCAGCGAACCGC 196
||||||||| ||||||||||||||| | ||||||||||||||||||||||||||| ||
Sbjct 706 TGTACTAGTGCTGTTTGCTTCAATCC-TCTAAGGTTATCGGCTGATCGTCAGCGAATCGG 764
Query 197 TACGGTGTCGGCGAGGGCT-GAGAAGCGGCGAAAGAGAGGATCGAGTGTGGTCTGTTATG 255
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 765 TACGGTGTCGGCGAGGG-TCGAGAAGCGGCGAAAGAGAGGATCGAGTGTGGTCTGTTATG 823
Query 256 CTACTCCAATGTTGTCTGTTCATAATCTACAATGGATCTCGACAATTTCTTGCGTTGCAT 315
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 CTACTCCGATGTTGTCTGTTCATAATCTACAATGGATCTCGACAATTTCTTGCGTTGCAT 883
Query 316 TGATGTTTGCAAGGGGTACTGGTATCCATAAGTCCTTTGTTGTTCCACTATTCGCACTAC 375
||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||
Sbjct 884 TGATGTTTGCAAGGGGTACTGCTATCCAGAAGTCCTTTGTTGTTCCACTATTTGCACTAC 943
Query 376 AAGCACCAATGGGCATTGTCTCCTGGATGAAGGGTGAATATGGCATCTGGGCAGCATTCT 435
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 944 AAGCACCATTGGGCATTGTCTCCTGGATGAAGGGTGAATATGGCATCTGGGCAGCATTCT 1003
Query 436 TGGCGCTTCTTACTCGACTGTTCTTCTCTTTTCCAGTTGAACTTGAGCTGCCCTTCATTG 495
||||||||||||| ||||| |||||| ||||||||| |||||||||||| || |||||||
Sbjct 1004 TGGCGCTTCTTACACGACTATTCTTCGCTTTTCCAGGTGAACTTGAGCTTCCATTCATTG 1063
Query 496 CTTTGCTTTTGGTGATTGTGGCGCCATATCAAGTTATGAGCATAAGAGGGAAACAGGAAG 555
| || ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 1064 CATTACTTTTGGTGATTGTGGCGCCATATCAAGTTATGGGCATAAGAGGGAAACAAGAAG 1123
Query 556 GTGCTATCCTTTCTTTAGCAATCTCTTGTTTTCTGGCTTTCCAGCATTTCTCAAGAGCAG 615
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1124 GTGCTATCCTTTCTTTAGCTATCTCTTGTTTTCTGGCTTTCCAGCATTTCTCAAGAGCAG 1183
Query 616 GCACCTTGCAGAAAGCATTTGATCAGAATTCAGTTCTTGCCACTGTAGCCATAATTGGTG 675
||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1184 GCAACTTGCAGAGAGCATTTGATCAGAGTTCAGTTCTTGCCACTGTAGCCATAATTGGTG 1243
Query 676 TCACAGTTGTATC 688
|||||||||||||
Sbjct 1244 TCACAGTTGTATC 1256
Score = 737 bits (399), Expect = 0.0
Identities = 578/662 (87%), Gaps = 22/662 (3%)
Strand=Plus/Plus
Query 27 ATGGCGAGTCTCTGTCTCTCATCGTCCCGGATCGTTTCTCTTCACCACCAGAAACCCTTT 86
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGAGTCTCTGTCTCTCATCGTCCCGGATCGTTTCTCTTCACCACCAGAAACCCTTT 60
Query 87 CTCGCTCTTAAACTCCGGCCTCGTCCTTCAAATATCTCCGGTCTAGGTCACAGTACTAGT 146
|| |||| |||||||||||||||||| || ||||||||||||||| || | | || |||
Sbjct 61 GTCTCTCTAAAACTCCGGCCTCGTCCTACAGATATCTCCGGTCTAGATCGCTGCACGAGT 120
Query 147 GTTGTTTGCTTCAATCCGT-TAAGGTTATC-GGCTGATCGTCAGCGAACCGCTACGGTGT 204
||||||||||||||| | | || ||||| || |||||||||||||||| |||||||||
Sbjct 121 ACTGTTTGCTTCAATCC-TCTTAGATTATCAGG-TGATCGTCAGCGAACCTCTACGGTGT 178
Query 205 CGGCGAGGGCTGAGAAGCGGCGAAAGAGAGGATCGAGTGTGGTCTGTTATGCTA-CTCCA 263
||||||||| ||||||||||| || | | ||||||||| |||||||| | ||||
Sbjct 179 CGGCGAGGGTTGAGAAGCGGC----GA-A--A--GAGTGTGGTTTGTTATGC-AGCTCCG 228
Query 264 ATGTTGTCTGTTC-ATAATCTACAATGGATCTCGACAATTTCTTGCGTTGCATTGATGTT 322
| || |||| || ||| |||||||||||||||||| ||||||||| ||||||||||| |
Sbjct 229 A--TT-TCTG-TCGATAGTCTACAATGGATCTCGACCATTTCTTGCCTTGCATTGATGCT 284
Query 323 TGCAAGGGGTACTGGTATCCATAAGTCCTTTGTTGTTCCACTATTCGCACTACAAGCACC 382
|||||||||||||| ||||||||||||| ||||||||||||||||||| ||||| |||||
Sbjct 285 TGCAAGGGGTACTGCTATCCATAAGTCCGTTGTTGTTCCACTATTCGCTCTACACGCACC 344
Query 383 AAT-GGGCATTGTCTCCTGGATGAAGGGTGAATATGGCATCTGGGCAGCATTCTTGGCGC 441
|| | |||| || | ||||| ||||| || |||||| |||||||||||||||||||||
Sbjct 345 -ATCGAGCATCATCACTTGGATAAAGGGAGAGTATGGCGTCTGGGCAGCATTCTTGGCGC 403
Query 442 TTCTTACTCGACTGTTCTTCTCTTTTCCAGTTGAACTTGAGCTGCCCTTCATTGCTTTGC 501
|| || |||||||||||||| ||||||||| |||||||||||||||||||||||| || |
Sbjct 404 TTATTGCTCGACTGTTCTTCACTTTTCCAGGTGAACTTGAGCTGCCCTTCATTGCATTAC 463
Query 502 TTTTGGTGATTGTGGCGCCATATCAAGTTATGAGCATAAGAGGGAAACAGGAAGGTGCTA 561
| ||||||||||||||||||||||||||||||| |||||||||||| || ||||| || |
Sbjct 464 TCTTGGTGATTGTGGCGCCATATCAAGTTATGAACATAAGAGGGAAGCAAGAAGGGGCAA 523
Query 562 TCCTTTCTTTAGCAATCTCTTGTTTTCTGGCTTTCCAGCATTTCTCAAGAGCAGGCACCT 621
|| | || ||||||| |||||||||||||||||||| ||||||||| ||||||| | ||
Sbjct 524 TCATATCAATAGCAATATCTTGTTTTCTGGCTTTCCAACATTTCTCACGAGCAGGGAGCT 583
Query 622 TGCAGAAAGCATTTGATCAGAATTCAGTTCTTGCCACTGTAGCCATAATTGGTGTCACAG 681
|| ||||||||| ||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 584 TGGAGAAAGCATATGAGAAGGGTTCAGTTCTTGCCACTGTAGCCATAATTGGTGTCACAG 643
Query 682 TT 683
||
Sbjct 644 TT 645
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30422087766
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5