BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29420.1
Length=800
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473154 jgi|Araly1|473154|fgenesh2_kg.1__3108__AT5G27780.1 442 2e-123
Ahg473156 jgi|Araly1|473156|fgenesh2_kg.1__3110__AT1G29450.1 427 5e-119
Ahg921991 jgi|Araly1|921991|scaffold_103272.1 403 9e-112
Ahg912754 jgi|Araly1|912754|Al_scaffold_0001_3008 398 4e-110
Ahg923547 jgi|Araly1|923547|scaffold_104828.1 180 2e-44
Ahg473157 jgi|Araly1|473157|fgenesh2_kg.1__3111__AT1G29460.1 154 1e-36
> Ahg473154 jgi|Araly1|473154|fgenesh2_kg.1__3108__AT5G27780.1
Length=438
Score = 442 bits (239), Expect = 2e-123
Identities = 344/394 (87%), Gaps = 9/394 (2%)
Strand=Plus/Plus
Query 44 ATGATGAACACAAAGAAGCTCTTGAAGATGGCCAAGAAATGGCAACAGAGAGCTGCCTTA 103
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 4 ATGATGAACACAAAGAAGCTCTTGAAGATGGCCAAGAAATGGCAACAAAGAGCAGCCTTC 63
Query 104 AGAAGGAAAAGAATCTCTTTTCATAGATCAACTGATACTACTAGCAGCTCAACCGCTGCA 163
|| |||||||||||||| ||||| || |||| || | | |||||||||||||| ||| |
Sbjct 64 AGCAGGAAAAGAATCTCATTTCAGAGTTCAAGTGCT--T-CTAGCAGCTCAACCACTGTA 120
Query 164 GAGAAGGGCTGTTTTGTGGTTTACACATCCGATAGAATCCGCTTTGCTTTTCCAATAAGT 223
|||||||| ||||| ||||||||||| | |||| |||||||||||||||||| |||||
Sbjct 121 GAGAAGGGTTGTTTCGTGGTTTACACGGCAGATAAAATCCGCTTTGCTTTTCCTTTAAGT 180
Query 224 TATCTGAGCAACTCTGTTATCCAAGAGCTCTTGAAGATATCCGAAGAAGAGTTTGG-CAT 282
|| ||||||||| || || |||||||||||||||| ||||| |||||||||||||| | |
Sbjct 181 TACCTGAGCAACCCTATTGTCCAAGAGCTCTTGAAAATATCTGAAGAAGAGTTTGGTC-T 239
Query 283 CCCCACGGAAGGACCAATCACATTGCCATTCGATTCGG-TTTTCTTGGAGTATCTCATCA 341
||| || |||||||||||||||||| |||||||||| | |||| || | |||||||||||
Sbjct 240 CCCGACAGAAGGACCAATCACATTGACATTCGATTCCGCTTTT-TTAGCGTATCTCATCA 298
Query 342 GATTGGTCCAAAGACGAATGGATGGAGACACAGAAAAGGCTCT-TATAACGTCAATCTCT 400
||||| || ||||||||||||||||||| |||||||||||||| | || ||||||||||
Sbjct 299 GATTGATCGAAAGACGAATGGATGGAGATACAGAAAAGGCTCTGT-TATTGTCAATCTCT 357
Query 401 AGTACTAGATGTTCTTTACCATGCTCTTTTCAAC 434
||| ||||||||||||||| ||| ||| | ||||
Sbjct 358 AGTGCTAGATGTTCTTTACAATGTTCTCTGCAAC 391
> Ahg473156 jgi|Araly1|473156|fgenesh2_kg.1__3110__AT1G29450.1
Length=508
Score = 427 bits (231), Expect = 5e-119
Identities = 334/382 (87%), Gaps = 13/382 (3%)
Strand=Plus/Plus
Query 43 AATGATGAACA-CAAAGAAGCTCTTGAAGATGGCCAAGAAATGGCAACAGAGAGCTG-CC 100
||||||||||| |||| ||||| | ||||||||||||||||||||||| ||||| | ||
Sbjct 93 AATGATGAACACCAAA-AAGCTAATCAAGATGGCCAAGAAATGGCAACAAAGAGCAGCCC 151
Query 101 TTAAGAAGGAAAAGAATCTCTTTTCATAGATCAACTGATACTACTAGCAGCTCAACCGCT 160
| | |||||||| ||||| ||||| ||||||| | |||| ||| |||||||||||||
Sbjct 152 TCCA-CAGGAAAAGGATCTCATTTCAAAGATCAA--G-TACTGCTACCAGCTCAACCGCT 207
Query 161 GCAGAGAAGGGCTGTTTTGTGGTTTACAC-ATCCGATAGAATC-CGCTTTGCTTTTCCAA 218
||||||||||| || |||||||||||||| | | ||||| | ||||||||||||||
Sbjct 208 GCAGAGAAGGGTTGCTTTGTGGTTTACACGA-CAGATAG-CGCACGCTTTGCTTTTCCTC 265
Query 219 TAAGTTATCTGAGCAACTCTGTTATCCAAGAGCTCTTGAAGATATCCGAAGAAGAGTTTG 278
||||||| ||||||||||||||| ||||||||||||||||||| || |||||||||||||
Sbjct 266 TAAGTTACCTGAGCAACTCTGTTTTCCAAGAGCTCTTGAAGATCTCTGAAGAAGAGTTTG 325
Query 279 GCATCCCCACGGAAGGACCAATCACATTGCCATTCGATTCGGTTTTCTTGGAGTATCTCA 338
|| || |||||||||||||||| |||||||||||||||||| ||||| |||||||||| |
Sbjct 326 GCCTCTCCACGGAAGGACCAATAACATTGCCATTCGATTCGATTTTCATGGAGTATCTTA 385
Query 339 TCAGATTGGTCCAAAGACGAATGGATGGAGACACAGAAAAGGCTCTTAT-AACGTCAATC 397
||| |||| || |||||||||||||||||||||||||||||||| |||| || |||||||
Sbjct 386 TCAAATTGATCGAAAGACGAATGGATGGAGACACAGAAAAGGCT-TTATTAATGTCAATC 444
Query 398 TCTAGTACTAGATGTTCTTTAC 419
|||||| |||||||||||||||
Sbjct 445 TCTAGTGCTAGATGTTCTTTAC 466
> Ahg921991 jgi|Araly1|921991|scaffold_103272.1
Length=291
Score = 403 bits (218), Expect = 9e-112
Identities = 266/289 (92%), Gaps = 4/289 (1%)
Strand=Plus/Plus
Query 28 CTTTTCCCTAAATATAATGATGAACACAAAGAAGCTCTTGAAGATGGCCAAGAAATGGCA 87
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5 CTTTTCTCTAGATATAATGATGAACACAAAGAAGCTCTTGAAGATGGCCAAGAAATGGCA 64
Query 88 ACAGAGAGCTGCCTTAAGAAGGAAA-AGAATCTCTTTTCATAGATCAACT-GATACTACT 145
|||||||||||||||||| || ||| |||||||| ||| | |||||| | | |||||||
Sbjct 65 ACAGAGAGCTGCCTTAAGCAG-AAAGAGAATCTCATTTGAGAGATCAG-TAGCTACTACT 122
Query 146 AGCAGCTCAACCGCTGCAGAGAAGGGCTGTTTTGTGGTTTACACATCCGATAGAATCCGC 205
|||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 123 AGCAGCTCAACCCCTGCAGAGAAAGGCTGTTTTGTGGTTTACACATCCGATAAAATCCGC 182
Query 206 TTTGCTTTTCCAATAAGTTATCTGAGCAACTCTGTTATCCAAGAGCTCTTGAAGATATCC 265
||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 183 TTTGCGTTTCCAATAAGTTACCTGAGCAACTCTGTTTTCCAAGAGCTCTTGAAGATATCT 242
Query 266 GAAGAAGAGTTTGGCATCCCCACGGAAGGACCAATCACATTGCCATTCG 314
||||||||||||||| || ||||| ||||||||||||| ||||||||||
Sbjct 243 GAAGAAGAGTTTGGCCTCTCCACGTAAGGACCAATCACGTTGCCATTCG 291
> Ahg912754 jgi|Araly1|912754|Al_scaffold_0001_3008
Length=573
Score = 398 bits (215), Expect = 4e-110
Identities = 329/383 (86%), Gaps = 11/383 (3%)
Strand=Plus/Plus
Query 68 AAGATGGCCAAGAAATGGCAACAGAGAGCTGCCTTAAG-AAGGAAAAGAATCTCTTTTCA 126
||||||||||||||||||||||| ||||| ||||| || | ||||||||||||| ||||
Sbjct 177 AAGATGGCCAAGAAATGGCAACAAAGAGCAGCCTTCAGCATGGAAAAGAATCTCACTTCA 236
Query 127 TA-GATCAACTGATACTACTAGCAGCTCAACCGCTGCAGAGAAGGGCTGTTTTGTGGTTT 185
| | |||| || ||||||||||||||||||| ||| ||||||| | ||||| |||||||
Sbjct 237 GACG-TCAAGTGCTACTACTAGCAGCTCAACCACTGTAGAGAAGCGTTGTTTCGTGGTTT 295
Query 186 ACACATCCGATAGAATC-CGCTTTGCTTTT-CCAATAAGTTATCTGAGCAACTCTGTTAT 243
|||| | |||| || | || |||| |||| |||| ||| || ||||||||||||||| |
Sbjct 296 ACACGGCAGATA-AAGCACGTTTTG-TTTTCCCAAAAAGCTACCTGAGCAACTCTGTTTT 353
Query 244 CCAAGAGCTCTTGAAGATATCCGAAGAAGAGTTTGGCATCCCCACG-GAAGGACCAATCA 302
||||||| ||||||||||||| ||||||||||||||| || ||| | || ||| ||||||
Sbjct 354 CCAAGAGGTCTTGAAGATATCTGAAGAAGAGTTTGGCCTCTCCA-GCGATGGAGCAATCA 412
Query 303 CATTGCCATTCGATTCGGTTTTCTTGGAGTATCTCATCAGATTGGTCCAAAGACGAATGG 362
||||| ||||||||||||||||||||||||||||||||| |||| ||||| |||||||||
Sbjct 413 CATTGACATTCGATTCGGTTTTCTTGGAGTATCTCATCAAATTGATCCAACGACGAATGG 472
Query 363 ATGGAGACACAGAAAAGGCTCT-TATAACGTCAATCTCTAGTACTAGATGTTCTTTACCA 421
| ||||| |||||||||||||| | ||| ||||||||||||| ||||||||||| ||||
Sbjct 473 AGGGAGATACAGAAAAGGCTCTGT-TAATGTCAATCTCTAGTGCTAGATGTTCTAAACCA 531
Query 422 TGCTCTTTTCAACTTCAAGAACA 444
| |||||||||| ||||||||
Sbjct 532 TATTCTTTTCAACAACAAGAACA 554
> Ahg923547 jgi|Araly1|923547|scaffold_104828.1
Length=247
Score = 180 bits (97), Expect = 2e-44
Identities = 166/198 (84%), Gaps = 10/198 (5%)
Strand=Plus/Plus
Query 61 GCTCTTGAAGATGGCCAAGAAATGGCAACAGAGAGCTGCCTTAAGAAGGAAAAGAATCTC 120
|||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||
Sbjct 11 GCTCTTGAAGATGGCCAAGAAATGGCAACAAAGAGCAGCCTTAAGCCGGAAAAGAATCTC 70
Query 121 TTTTCATAGATCAACTGATACTACTAGCAGCTCAACCGCT-GCAGAGAAGGGCTGTTTTG 179
||||| ||||||||| | ||| |||| |||| | | | |||||||||||||| ||
Sbjct 71 ATTTCAGAGATCAACT-A--CTAGTAGC---TCAAGTG-TAGTAGAGAAGGGCTGTTATG 123
Query 180 TGGTTTACACATCCGATAGAA-TCCGCTTTGCTTTTCCAATAAGTTATCTGAGCAACTCT 238
|||||||||| | |||| || | || |||||||| ||||||||||| || || ||||||
Sbjct 124 TGGTTTACACGGCGGATA-AAGTACGTTTTGCTTTCCCAATAAGTTACCTTAGAAACTCT 182
Query 239 GTTATCCAAGAGCTCTTG 256
||| | ||||||||||||
Sbjct 183 GTTTTTCAAGAGCTCTTG 200
> Ahg473157 jgi|Araly1|473157|fgenesh2_kg.1__3111__AT1G29460.1
Length=469
Score = 154 bits (83), Expect = 1e-36
Identities = 156/189 (83%), Gaps = 14/189 (7%)
Strand=Plus/Plus
Query 44 ATGATGAACACAAAGAAGCT-CTTGAAGATGGCCAAGAAATGGCAACAGAGAGCTGCCTT 102
||||| ||||| ||||| || | | ||||||||||||||||||||||||||||| ||| |
Sbjct 23 ATGATCAACACTAAGAAACTAC-TCAAGATGGCCAAGAAATGGCAACAGAGAGCAGCCCT 81
Query 103 A-AGAAGGAAAAGAATCTCTTTTCATAGATCAA---CTGA-TACTACTAG---CAGCTCA 154
| | | |||||||||| || ||||| ||||||| || | ||||||||| |||||||
Sbjct 82 ACACA-GGAAAAGAATATCATTTCAGAGATCAAGTACT-ACTACTACTAGTAGCAGCTCA 139
Query 155 ACCGCTGCAGAGAAGGGCTGTTTTGTGGTTTACACA-TCCGATAGAATCCGCTTTGCTTT 213
| |||| |||||||||||||| ||||||||||| | |||| |||||||||||||||
Sbjct 140 TCTGCTGTGGAGAAGGGCTGTTTCGTGGTTTACACGGTT-GATAAAATCCGCTTTGCTTT 198
Query 214 TCCAATAAG 222
||| |||||
Sbjct 199 TCCCATAAG 207
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29545260675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5