BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G29420.1 Length=800 Score E Sequences producing significant alignments: (Bits) Value Ahg473154 jgi|Araly1|473154|fgenesh2_kg.1__3108__AT5G27780.1 442 2e-123 Ahg473156 jgi|Araly1|473156|fgenesh2_kg.1__3110__AT1G29450.1 427 5e-119 Ahg921991 jgi|Araly1|921991|scaffold_103272.1 403 9e-112 Ahg912754 jgi|Araly1|912754|Al_scaffold_0001_3008 398 4e-110 Ahg923547 jgi|Araly1|923547|scaffold_104828.1 180 2e-44 Ahg473157 jgi|Araly1|473157|fgenesh2_kg.1__3111__AT1G29460.1 154 1e-36 > Ahg473154 jgi|Araly1|473154|fgenesh2_kg.1__3108__AT5G27780.1 Length=438 Score = 442 bits (239), Expect = 2e-123 Identities = 344/394 (87%), Gaps = 9/394 (2%) Strand=Plus/Plus Query 44 ATGATGAACACAAAGAAGCTCTTGAAGATGGCCAAGAAATGGCAACAGAGAGCTGCCTTA 103 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 4 ATGATGAACACAAAGAAGCTCTTGAAGATGGCCAAGAAATGGCAACAAAGAGCAGCCTTC 63 Query 104 AGAAGGAAAAGAATCTCTTTTCATAGATCAACTGATACTACTAGCAGCTCAACCGCTGCA 163 || |||||||||||||| ||||| || |||| || | | |||||||||||||| ||| | Sbjct 64 AGCAGGAAAAGAATCTCATTTCAGAGTTCAAGTGCT--T-CTAGCAGCTCAACCACTGTA 120 Query 164 GAGAAGGGCTGTTTTGTGGTTTACACATCCGATAGAATCCGCTTTGCTTTTCCAATAAGT 223 |||||||| ||||| ||||||||||| | |||| |||||||||||||||||| ||||| Sbjct 121 GAGAAGGGTTGTTTCGTGGTTTACACGGCAGATAAAATCCGCTTTGCTTTTCCTTTAAGT 180 Query 224 TATCTGAGCAACTCTGTTATCCAAGAGCTCTTGAAGATATCCGAAGAAGAGTTTGG-CAT 282 || ||||||||| || || |||||||||||||||| ||||| |||||||||||||| | | Sbjct 181 TACCTGAGCAACCCTATTGTCCAAGAGCTCTTGAAAATATCTGAAGAAGAGTTTGGTC-T 239 Query 283 CCCCACGGAAGGACCAATCACATTGCCATTCGATTCGG-TTTTCTTGGAGTATCTCATCA 341 ||| || |||||||||||||||||| |||||||||| | |||| || | ||||||||||| Sbjct 240 CCCGACAGAAGGACCAATCACATTGACATTCGATTCCGCTTTT-TTAGCGTATCTCATCA 298 Query 342 GATTGGTCCAAAGACGAATGGATGGAGACACAGAAAAGGCTCT-TATAACGTCAATCTCT 400 ||||| || ||||||||||||||||||| |||||||||||||| | || |||||||||| Sbjct 299 GATTGATCGAAAGACGAATGGATGGAGATACAGAAAAGGCTCTGT-TATTGTCAATCTCT 357 Query 401 AGTACTAGATGTTCTTTACCATGCTCTTTTCAAC 434 ||| ||||||||||||||| ||| ||| | |||| Sbjct 358 AGTGCTAGATGTTCTTTACAATGTTCTCTGCAAC 391 > Ahg473156 jgi|Araly1|473156|fgenesh2_kg.1__3110__AT1G29450.1 Length=508 Score = 427 bits (231), Expect = 5e-119 Identities = 334/382 (87%), Gaps = 13/382 (3%) Strand=Plus/Plus Query 43 AATGATGAACA-CAAAGAAGCTCTTGAAGATGGCCAAGAAATGGCAACAGAGAGCTG-CC 100 ||||||||||| |||| ||||| | ||||||||||||||||||||||| ||||| | || Sbjct 93 AATGATGAACACCAAA-AAGCTAATCAAGATGGCCAAGAAATGGCAACAAAGAGCAGCCC 151 Query 101 TTAAGAAGGAAAAGAATCTCTTTTCATAGATCAACTGATACTACTAGCAGCTCAACCGCT 160 | | |||||||| ||||| ||||| ||||||| | |||| ||| ||||||||||||| Sbjct 152 TCCA-CAGGAAAAGGATCTCATTTCAAAGATCAA--G-TACTGCTACCAGCTCAACCGCT 207 Query 161 GCAGAGAAGGGCTGTTTTGTGGTTTACAC-ATCCGATAGAATC-CGCTTTGCTTTTCCAA 218 ||||||||||| || |||||||||||||| | | ||||| | |||||||||||||| Sbjct 208 GCAGAGAAGGGTTGCTTTGTGGTTTACACGA-CAGATAG-CGCACGCTTTGCTTTTCCTC 265 Query 219 TAAGTTATCTGAGCAACTCTGTTATCCAAGAGCTCTTGAAGATATCCGAAGAAGAGTTTG 278 ||||||| ||||||||||||||| ||||||||||||||||||| || ||||||||||||| Sbjct 266 TAAGTTACCTGAGCAACTCTGTTTTCCAAGAGCTCTTGAAGATCTCTGAAGAAGAGTTTG 325 Query 279 GCATCCCCACGGAAGGACCAATCACATTGCCATTCGATTCGGTTTTCTTGGAGTATCTCA 338 || || |||||||||||||||| |||||||||||||||||| ||||| |||||||||| | Sbjct 326 GCCTCTCCACGGAAGGACCAATAACATTGCCATTCGATTCGATTTTCATGGAGTATCTTA 385 Query 339 TCAGATTGGTCCAAAGACGAATGGATGGAGACACAGAAAAGGCTCTTAT-AACGTCAATC 397 ||| |||| || |||||||||||||||||||||||||||||||| |||| || ||||||| Sbjct 386 TCAAATTGATCGAAAGACGAATGGATGGAGACACAGAAAAGGCT-TTATTAATGTCAATC 444 Query 398 TCTAGTACTAGATGTTCTTTAC 419 |||||| ||||||||||||||| Sbjct 445 TCTAGTGCTAGATGTTCTTTAC 466 > Ahg921991 jgi|Araly1|921991|scaffold_103272.1 Length=291 Score = 403 bits (218), Expect = 9e-112 Identities = 266/289 (92%), Gaps = 4/289 (1%) Strand=Plus/Plus Query 28 CTTTTCCCTAAATATAATGATGAACACAAAGAAGCTCTTGAAGATGGCCAAGAAATGGCA 87 |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5 CTTTTCTCTAGATATAATGATGAACACAAAGAAGCTCTTGAAGATGGCCAAGAAATGGCA 64 Query 88 ACAGAGAGCTGCCTTAAGAAGGAAA-AGAATCTCTTTTCATAGATCAACT-GATACTACT 145 |||||||||||||||||| || ||| |||||||| ||| | |||||| | | ||||||| Sbjct 65 ACAGAGAGCTGCCTTAAGCAG-AAAGAGAATCTCATTTGAGAGATCAG-TAGCTACTACT 122 Query 146 AGCAGCTCAACCGCTGCAGAGAAGGGCTGTTTTGTGGTTTACACATCCGATAGAATCCGC 205 |||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||| Sbjct 123 AGCAGCTCAACCCCTGCAGAGAAAGGCTGTTTTGTGGTTTACACATCCGATAAAATCCGC 182 Query 206 TTTGCTTTTCCAATAAGTTATCTGAGCAACTCTGTTATCCAAGAGCTCTTGAAGATATCC 265 ||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||| Sbjct 183 TTTGCGTTTCCAATAAGTTACCTGAGCAACTCTGTTTTCCAAGAGCTCTTGAAGATATCT 242 Query 266 GAAGAAGAGTTTGGCATCCCCACGGAAGGACCAATCACATTGCCATTCG 314 ||||||||||||||| || ||||| ||||||||||||| |||||||||| Sbjct 243 GAAGAAGAGTTTGGCCTCTCCACGTAAGGACCAATCACGTTGCCATTCG 291 > Ahg912754 jgi|Araly1|912754|Al_scaffold_0001_3008 Length=573 Score = 398 bits (215), Expect = 4e-110 Identities = 329/383 (86%), Gaps = 11/383 (3%) Strand=Plus/Plus Query 68 AAGATGGCCAAGAAATGGCAACAGAGAGCTGCCTTAAG-AAGGAAAAGAATCTCTTTTCA 126 ||||||||||||||||||||||| ||||| ||||| || | ||||||||||||| |||| Sbjct 177 AAGATGGCCAAGAAATGGCAACAAAGAGCAGCCTTCAGCATGGAAAAGAATCTCACTTCA 236 Query 127 TA-GATCAACTGATACTACTAGCAGCTCAACCGCTGCAGAGAAGGGCTGTTTTGTGGTTT 185 | | |||| || ||||||||||||||||||| ||| ||||||| | ||||| ||||||| Sbjct 237 GACG-TCAAGTGCTACTACTAGCAGCTCAACCACTGTAGAGAAGCGTTGTTTCGTGGTTT 295 Query 186 ACACATCCGATAGAATC-CGCTTTGCTTTT-CCAATAAGTTATCTGAGCAACTCTGTTAT 243 |||| | |||| || | || |||| |||| |||| ||| || ||||||||||||||| | Sbjct 296 ACACGGCAGATA-AAGCACGTTTTG-TTTTCCCAAAAAGCTACCTGAGCAACTCTGTTTT 353 Query 244 CCAAGAGCTCTTGAAGATATCCGAAGAAGAGTTTGGCATCCCCACG-GAAGGACCAATCA 302 ||||||| ||||||||||||| ||||||||||||||| || ||| | || ||| |||||| Sbjct 354 CCAAGAGGTCTTGAAGATATCTGAAGAAGAGTTTGGCCTCTCCA-GCGATGGAGCAATCA 412 Query 303 CATTGCCATTCGATTCGGTTTTCTTGGAGTATCTCATCAGATTGGTCCAAAGACGAATGG 362 ||||| ||||||||||||||||||||||||||||||||| |||| ||||| ||||||||| Sbjct 413 CATTGACATTCGATTCGGTTTTCTTGGAGTATCTCATCAAATTGATCCAACGACGAATGG 472 Query 363 ATGGAGACACAGAAAAGGCTCT-TATAACGTCAATCTCTAGTACTAGATGTTCTTTACCA 421 | ||||| |||||||||||||| | ||| ||||||||||||| ||||||||||| |||| Sbjct 473 AGGGAGATACAGAAAAGGCTCTGT-TAATGTCAATCTCTAGTGCTAGATGTTCTAAACCA 531 Query 422 TGCTCTTTTCAACTTCAAGAACA 444 | |||||||||| |||||||| Sbjct 532 TATTCTTTTCAACAACAAGAACA 554 > Ahg923547 jgi|Araly1|923547|scaffold_104828.1 Length=247 Score = 180 bits (97), Expect = 2e-44 Identities = 166/198 (84%), Gaps = 10/198 (5%) Strand=Plus/Plus Query 61 GCTCTTGAAGATGGCCAAGAAATGGCAACAGAGAGCTGCCTTAAGAAGGAAAAGAATCTC 120 |||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||| Sbjct 11 GCTCTTGAAGATGGCCAAGAAATGGCAACAAAGAGCAGCCTTAAGCCGGAAAAGAATCTC 70 Query 121 TTTTCATAGATCAACTGATACTACTAGCAGCTCAACCGCT-GCAGAGAAGGGCTGTTTTG 179 ||||| ||||||||| | ||| |||| |||| | | | |||||||||||||| || Sbjct 71 ATTTCAGAGATCAACT-A--CTAGTAGC---TCAAGTG-TAGTAGAGAAGGGCTGTTATG 123 Query 180 TGGTTTACACATCCGATAGAA-TCCGCTTTGCTTTTCCAATAAGTTATCTGAGCAACTCT 238 |||||||||| | |||| || | || |||||||| ||||||||||| || || |||||| Sbjct 124 TGGTTTACACGGCGGATA-AAGTACGTTTTGCTTTCCCAATAAGTTACCTTAGAAACTCT 182 Query 239 GTTATCCAAGAGCTCTTG 256 ||| | |||||||||||| Sbjct 183 GTTTTTCAAGAGCTCTTG 200 > Ahg473157 jgi|Araly1|473157|fgenesh2_kg.1__3111__AT1G29460.1 Length=469 Score = 154 bits (83), Expect = 1e-36 Identities = 156/189 (83%), Gaps = 14/189 (7%) Strand=Plus/Plus Query 44 ATGATGAACACAAAGAAGCT-CTTGAAGATGGCCAAGAAATGGCAACAGAGAGCTGCCTT 102 ||||| ||||| ||||| || | | ||||||||||||||||||||||||||||| ||| | Sbjct 23 ATGATCAACACTAAGAAACTAC-TCAAGATGGCCAAGAAATGGCAACAGAGAGCAGCCCT 81 Query 103 A-AGAAGGAAAAGAATCTCTTTTCATAGATCAA---CTGA-TACTACTAG---CAGCTCA 154 | | | |||||||||| || ||||| ||||||| || | ||||||||| ||||||| Sbjct 82 ACACA-GGAAAAGAATATCATTTCAGAGATCAAGTACT-ACTACTACTAGTAGCAGCTCA 139 Query 155 ACCGCTGCAGAGAAGGGCTGTTTTGTGGTTTACACA-TCCGATAGAATCCGCTTTGCTTT 213 | |||| |||||||||||||| ||||||||||| | |||| ||||||||||||||| Sbjct 140 TCTGCTGTGGAGAAGGGCTGTTTCGTGGTTTACACGGTT-GATAAAATCCGCTTTGCTTT 198 Query 214 TCCAATAAG 222 ||| ||||| Sbjct 199 TCCCATAAG 207 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29545260675 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5