BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29450.1
Length=549
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473156 jgi|Araly1|473156|fgenesh2_kg.1__3110__AT1G29450.1 678 0.0
Ahg912754 jgi|Araly1|912754|Al_scaffold_0001_3008 361 4e-99
> Ahg473156 jgi|Araly1|473156|fgenesh2_kg.1__3110__AT1G29450.1
Length=508
Score = 678 bits (367), Expect = 0.0
Identities = 435/467 (93%), Gaps = 8/467 (2%)
Strand=Plus/Plus
Query 1 CTTCACCAATCATAACTTGCATTCAAAGAGTTCTACAACACAAGTTAA-AATCTCCTTCT 59
||||| |||||||||||||||||||||||||||||||||||||| ||| |||||| || |
Sbjct 1 CTTCATCAATCATAACTTGCATTCAAAGAGTTCTACAACACAAG-TAACAATCTCTTTGT 59
Query 60 GCTTTCGGATCTACAAAATATTTTCCTGAAAAGAATGATGAACACAAAAAAGCTAATCAA 119
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 60 GCTTTCGGATCTACAAAATATTTTCTTGAAAAGAATGATGAACACCAAAAAGCTAATCAA 119
Query 120 GATGGCCAAGAAGTGGCAACAAAGAGCAGCCCTCCACAGGAAAAGGATCTCATTTCAAAG 179
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GATGGCCAAGAAATGGCAACAAAGAGCAGCCCTCCACAGGAAAAGGATCTCATTTCAAAG 179
Query 180 ATCAAGTAGTGCTACTAGCTCAACCGCTGCAGAGAAGGGTTGTTTTGTGGTTTACACGAC 239
|||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 180 ATCAAGTACTGCTACCAGCTCAACCGCTGCAGAGAAGGGTTGCTTTGTGGTTTACACGAC 239
Query 240 AGACAGCACACGCTTTGCTTTTCCGCTAAGTTACCTGAGTAACTCTGTTTTCCAAGAACT 299
||| ||| |||||||||||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 240 AGATAGCGCACGCTTTGCTTTTCCTCTAAGTTACCTGAGCAACTCTGTTTTCCAAGAGCT 299
Query 300 CTTGAAGATCTCTGAAGAAGAGTTTGGCCTC-CCAACTGGT-GGACCTATCACATCGCCA 357
||||||||||||||||||||||||||||||| ||| | || ||||| || |||| ||||
Sbjct 300 CTTGAAGATCTCTGAAGAAGAGTTTGGCCTCTCCA-C-GGAAGGACCAATAACATTGCCA 357
Query 358 TTCGATTC-AGTTTTCTTGGAGTATCTCATCAAATTGGTCCAAAGACGAATGGATGCAGA 416
|||||||| | ||||| |||||||||| ||||||||| || ||||||||||||||| |||
Sbjct 358 TTCGATTCGA-TTTTCATGGAGTATCTTATCAAATTGATCGAAAGACGAATGGATGGAGA 416
Query 417 CACAGAAAAGGCTTTGTTAATGTCAATCTCTAGTGCTAGATGTTCTT 463
||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 417 CACAGAAAAGGCTTTATTAATGTCAATCTCTAGTGCTAGATGTTCTT 463
> Ahg912754 jgi|Araly1|912754|Al_scaffold_0001_3008
Length=573
Score = 361 bits (195), Expect = 4e-99
Identities = 325/385 (84%), Gaps = 20/385 (5%)
Strand=Plus/Plus
Query 118 AAGATGGCCAAGAAGTGGCAACAAAGAGCAGCCCTCCA-CA-GGAAAAGGATCTCATTTC 175
|||||||||||||| |||||||||||||||| ||| || || ||||||| |||||| |||
Sbjct 177 AAGATGGCCAAGAAATGGCAACAAAGAGCAG-CCTTCAGCATGGAAAAGAATCTCACTTC 235
Query 176 A-AAGATCAAGTAG-TGCTACT---AGCTCAACCGCTGCAGAGAAGGGTTGTTTTGTGGT 230
| | | |||||| | | ||||| ||||||||| ||| ||||||| ||||||| |||||
Sbjct 236 AGACG-TCAAGT-GCTACTACTAGCAGCTCAACCACTGTAGAGAAGCGTTGTTTCGTGGT 293
Query 231 TTACACGACAGACAGCA-CACGCTTTGCTTTT-CCGCTAAGTTACCTGAGTAACTCTGTT 288
||||||| |||| | | |||| |||| |||| || ||| |||||||| |||||||||
Sbjct 294 TTACACGGCAGATA-AAGCACGTTTTG-TTTTCCCAAAAAGCTACCTGAGCAACTCTGTT 351
Query 289 TTCCAAGAACTCTTGAAGATCTCTGAAGAAGAGTTTGGCCTC-CCAACTGGTGGACCTAT 347
|||||||| |||||||||| ||||||||||||||||||||| ||| | | |||| | ||
Sbjct 352 TTCCAAGAGGTCTTGAAGATATCTGAAGAAGAGTTTGGCCTCTCCAGC-GATGGAGCAAT 410
Query 348 CACATCGCCATTCGATTCAGTTTTCTTGGAGTATCTCATCAAATTGGTCCAAAGACGAAT 407
||||| | |||||||||| ||||||||||||||||||||||||||| ||||| |||||||
Sbjct 411 CACATTGACATTCGATTCGGTTTTCTTGGAGTATCTCATCAAATTGATCCAACGACGAAT 470
Query 408 GGATGCAGACACAGAAAAGGCTTTGTTAATGTCAATCTCTAGTGCTAGATGTTCTTC-CC 466
||| | ||| |||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 471 GGAGGGAGATACAGAAAAGGCTCTGTTAATGTCAATCTCTAGTGCTAGATGTTCTAAACC 530
Query 467 A-ATGCTCTTTGAAACTACAAGAAC 490
| || || ||| || | ||||||||
Sbjct 531 ATATTCT-TTTCAA-CAACAAGAAC 553
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20031684225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5