BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29460.1
Length=637
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473157 jgi|Araly1|473157|fgenesh2_kg.1__3111__AT1G29460.1 298 3e-80
Ahg912754 jgi|Araly1|912754|Al_scaffold_0001_3008 294 4e-79
Ahg473156 jgi|Araly1|473156|fgenesh2_kg.1__3110__AT1G29450.1 289 2e-77
Ahg473154 jgi|Araly1|473154|fgenesh2_kg.1__3108__AT5G27780.1 287 7e-77
Ahg473153 jgi|Araly1|473153|fgenesh2_kg.1__3107__AT1G29490.1 281 3e-75
Ahg921991 jgi|Araly1|921991|scaffold_103272.1 189 2e-47
Ahg923547 jgi|Araly1|923547|scaffold_104828.1 97.1 1e-19
> Ahg473157 jgi|Araly1|473157|fgenesh2_kg.1__3111__AT1G29460.1
Length=469
Score = 298 bits (161), Expect = 3e-80
Identities = 207/229 (90%), Gaps = 3/229 (1%)
Strand=Plus/Plus
Query 323 AAGAT-ATCTGAAGAAGAGTTCGGCCTCAGGGCGGGTGGACCAATCACGTTGCCGTTCGA 381
||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 205 AAGATCCTCTGAAGAAGAGTTCGGCCTCACGGCAGGTGGACCAATCACGTTGCCGTTCGA 264
Query 382 CTCGGTTTTCTTGGAGTATCTCATCAAATTTATCGAACGAAGAATGGATGGAGATACAGA 441
|| |||||||||||||||||||||| ||| |||| ||||||||| ||||||||||||||
Sbjct 265 TTCCGTTTTCTTGGAGTATCTCATCACATTGATCGGACGAAGAATCGATGGAGATACAGA 324
Query 442 AAAAGCTCTTTTAATGTCAATCTCTAGTGCTAGATGCTCTATGCAACCACAAGAACAACA 501
||| ||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 325 AAAGGCTCTGCTAATGTCAATCTCTAGTGCTAGATGCTCTTTGCAACTACAAGAACAACA 384
Query 502 GAGTGGTTA-TACCCAACAATTACTTGTATTTTAGAGAATTAGAGTGTA 549
||| || | ||| |||||||||||||||||||||||||||| | ||||
Sbjct 385 AAGTAGT-AGTACTCAACAATTACTTGTATTTTAGAGAATTATACTGTA 432
Score = 209 bits (113), Expect = 2e-53
Identities = 184/215 (86%), Gaps = 18/215 (8%)
Strand=Plus/Plus
Query 85 AAAGATGATCAACACTAAGAAACTACTCAAGATGGCCAAGAAATGGCAACAAAGAGCTGC 144
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 19 AAAGATGATCAACACTAAGAAACTACTCAAGATGGCCAAGAAATGGCAACAGAGAGCAGC 78
Query 145 CCT-CAAGAGGAAAAGAATCTCATTCCAAAGATCAactactactactactactactacta 203
||| || ||||||||||| ||||| || ||||||| |||||||||||||| ||
Sbjct 79 CCTACAC-AGGAAAAGAATATCATTTCAGAGATCAAGTACTACTACTACTAGTA------ 131
Query 204 ctactactaGCAGCTCAACTGCTGTGGAGAAGGGCTGTTTCGTGGTTTACACGGTTGATA 263
|||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 132 ---------GCAGCTCATCTGCTGTGGAGAAGGGCTGTTTCGTGGTTTACACGGTTGATA 182
Query 264 AAATCCGCTTTGCTTTTCCGTTAAGTTACT-TGAA 297
||||||||||||||||||| |||| | || ||||
Sbjct 183 AAATCCGCTTTGCTTTTCCCATAAGATCCTCTGAA 217
Score = 91.6 bits (49), Expect = 6e-18
Identities = 49/49 (100%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 571 AATTATACTGTATTAGATAGACAGATCATTTCAAAAATACAAACTACTA 619
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AATTATACTGTATTAGATAGACAGATCATTTCAAAAATACAAACTACTA 469
> Ahg912754 jgi|Araly1|912754|Al_scaffold_0001_3008
Length=573
Score = 294 bits (159), Expect = 4e-79
Identities = 242/282 (86%), Gaps = 6/282 (2%)
Strand=Plus/Plus
Query 204 ctactactaGCAGCTCAACTGCTGTGGAGAAGGGCTGTTTCGTGGTTTACACGGTTGATA 263
||||||||||||||||||| |||| |||||| | ||||||||||||||||||| |||
Sbjct 248 CTACTACTAGCAGCTCAACCACTGTAGAGAAGCGTTGTTTCGTGGTTTACACGGCAGAT- 306
Query 264 AAATC-CGCTTTGCTTTT-CCGTTAAGTTACTTGAACAACTCTGTTTTCGAAGAGCTCTT 321
||| | || |||| |||| || ||| ||| ||| ||||||||||||| ||||| ||||
Sbjct 307 AAAGCACGTTTTG-TTTTCCCAAAAAGCTACCTGAGCAACTCTGTTTTCCAAGAGGTCTT 365
Query 322 GAAGATATCTGAAGAAGAGTTCGGCCTC-AGGGCGGGTGGACCAATCACGTTGCCGTTCG 380
||||||||||||||||||||| |||||| || | |||| ||||||| ||| | ||||
Sbjct 366 GAAGATATCTGAAGAAGAGTTTGGCCTCTCCAGC-GATGGAGCAATCACATTGACATTCG 424
Query 381 ACTCGGTTTTCTTGGAGTATCTCATCAAATTTATCGAACGAAGAATGGATGGAGATACAG 440
| ||||||||||||||||||||||||||||| ||| ||||| ||||||| ||||||||||
Sbjct 425 ATTCGGTTTTCTTGGAGTATCTCATCAAATTGATCCAACGACGAATGGAGGGAGATACAG 484
Query 441 AAAAAGCTCTTTTAATGTCAATCTCTAGTGCTAGATGCTCTA 482
|||| ||||| |||||||||||||||||||||||||| ||||
Sbjct 485 AAAAGGCTCTGTTAATGTCAATCTCTAGTGCTAGATGTTCTA 526
Score = 73.1 bits (39), Expect = 2e-12
Identities = 51/56 (91%), Gaps = 3/56 (5%)
Strand=Plus/Plus
Query 113 AAGATGGCCAAGAAATGGCAACAAAGAGCTGCCCTCAAG-A-GGAAAAGAATCTCA 166
||||||||||||||||||||||||||||| ||| ||| | | ||||||||||||||
Sbjct 177 AAGATGGCCAAGAAATGGCAACAAAGAGCAGCCTTCA-GCATGGAAAAGAATCTCA 231
> Ahg473156 jgi|Araly1|473156|fgenesh2_kg.1__3110__AT1G29450.1
Length=508
Score = 289 bits (156), Expect = 2e-77
Identities = 338/420 (80%), Gaps = 35/420 (8%)
Strand=Plus/Plus
Query 85 AAAG-ATGATCAACACTAAGAAA-CTACTCAAGATGGCCAAGAAATGGCAACAAAGAGCT 142
|||| ||||| ||||| || ||| ||| |||||||||||||||||||||||||||||||
Sbjct 89 AAAGAATGATGAACACCAA-AAAGCTAATCAAGATGGCCAAGAAATGGCAACAAAGAGCA 147
Query 143 GCCCTCAAGAGGAAAAGAATCTCATTCCAAAGATCAactactactactactactactact 202
|||||| | |||||||| |||||||| |||||||||| |||| |||| | | || |
Sbjct 148 GCCCTCCACAGGAAAAGGATCTCATTTCAAAGATCAAGTACTGCTAC--C-AG--CT-C- 200
Query 203 actactactaGCAGCTCAACTGCTGTGGAGAAGGGCTG-TTTCGTGGTTTACACGGTTGA 261
| || | || || | | ||||||| || ||| |||||||||||| ||
Sbjct 201 A--AC--C--GCTGC--A---G------AGAAGGGTTGCTTT-GTGGTTTACACGACAGA 242
Query 262 TAAAATC-CGCTTTGCTTTTCCGT-TAAGTTACTTGAACAACTCTGTTTTCGAAGAGCTC 319
|| | |||||||||||||| | |||||||| ||| ||||||||||||| ||||||||
Sbjct 243 TAGCG-CACGCTTTGCTTTTCC-TCTAAGTTACCTGAGCAACTCTGTTTTCCAAGAGCTC 300
Query 320 TTGAAGATATCTGAAGAAGAGTTCGGCCTCAGGGCGGGTGGACCAATCACGTTGCCGTTC 379
|||||||| |||||||||||||| |||||| ||| |||||||| || ||||| |||
Sbjct 301 TTGAAGATCTCTGAAGAAGAGTTTGGCCTCTCCACGGAAGGACCAATAACATTGCCATTC 360
Query 380 GACTCGGTTTTCTTGGAGTATCTCATCAAATTTATCGAACGAAGAATGGATGGAGATACA 439
|| ||| ||||| |||||||||| |||||||| |||||| || ||||||||||||| |||
Sbjct 361 GATTCGATTTTCATGGAGTATCTTATCAAATTGATCGAAAGACGAATGGATGGAGACACA 420
Query 440 GAAAAAGCTCTT-TTAATGTCAATCTCTAGTGCTAGATGCTCTATGCAACCACAAGAACA 498
||||| ||| || |||||||||||||||||||||||||| ||| | |||| || ||||||
Sbjct 421 GAAAAGGCT-TTATTAATGTCAATCTCTAGTGCTAGATGTTCTTTACAACAACCAGAACA 479
> Ahg473154 jgi|Araly1|473154|fgenesh2_kg.1__3108__AT5G27780.1
Length=438
Score = 287 bits (155), Expect = 7e-77
Identities = 234/273 (86%), Gaps = 2/273 (1%)
Strand=Plus/Plus
Query 210 ctaGCAGCTCAACTGCTGTGGAGAAGGGCTGTTTCGTGGTTTACACGGTTGATAAAATCC 269
||||||||||||| |||| |||||||| ||||||||||||||||||| ||||||||||
Sbjct 101 CTAGCAGCTCAACCACTGTAGAGAAGGGTTGTTTCGTGGTTTACACGGCAGATAAAATCC 160
Query 270 GCTTTGCTTTTCCGTTAAGTTACTTGAACAACTCTGTTTTCGAAGAGCTCTTGAAGATAT 329
||||||||||||| ||||||||| ||| |||| || || || ||||||||||||| ||||
Sbjct 161 GCTTTGCTTTTCCTTTAAGTTACCTGAGCAACCCTATTGTCCAAGAGCTCTTGAAAATAT 220
Query 330 CTGAAGAAGAGTTCGGCCTCAGGGCGGGTGGACCAATCACGTTGCCGTTCGACTCGG-TT 388
||||||||||||| || ||| | | | ||||||||||| ||| | ||||| || | ||
Sbjct 221 CTGAAGAAGAGTTTGGTCTCCCGACAGAAGGACCAATCACATTGACATTCGATTCCGCTT 280
Query 389 TTCTTGGAGTATCTCATCAAATTTATCGAACGAAGAATGGATGGAGATACAGAAAAAGCT 448
|| || | ||||||||||| ||| |||||| || |||||||||||||||||||||| |||
Sbjct 281 TT-TTAGCGTATCTCATCAGATTGATCGAAAGACGAATGGATGGAGATACAGAAAAGGCT 339
Query 449 CTTTTAATGTCAATCTCTAGTGCTAGATGCTCT 481
|| ||| |||||||||||||||||||||| |||
Sbjct 340 CTGTTATTGTCAATCTCTAGTGCTAGATGTTCT 372
> Ahg473153 jgi|Araly1|473153|fgenesh2_kg.1__3107__AT1G29490.1
Length=491
Score = 281 bits (152), Expect = 3e-75
Identities = 323/401 (81%), Gaps = 29/401 (7%)
Strand=Plus/Plus
Query 85 AAAGATGATCAACACTAAGAAACTACTCAAGATGGCCAAGAAATGGCAACAA-AGAGCTG 143
||| ||||| ||||| ||||| ||| ||||||||||||||||||||||| || | ||| |
Sbjct 15 AAAAATGATGAACACAAAGAAGCTAATCAAGATGGCCAAGAAATGGCAA-AAGAAAGCAG 73
Query 144 CCCTCAAG-AGGAAAAGAATCTCATTCCAAAGATCAactactactactactactactact 202
| | ||| ||||||||||||||||| || ||||||| |||||| | |||| | |
Sbjct 74 -CATTAAGCAGGAAAAGAATCTCATTTCAGAGATCAAGTACTAC--C-ACTA--GC-A-- 124
Query 203 actactactaGCAGCTCAACTGCTGTGGAGAAGGGCTGTTTCGTGGTTTACACGGTTGAT 262
|| | | | | | | | | | |||||||| ||||| || ||||||||||| |||
Sbjct 125 GCT-C-A-T--C--CGC-A--G--G-AGAGAAGGGTTGTTTTGTAGTTTACACGGTGGAT 171
Query 263 AAAATCCGCTTTGCTTTTCCGTTAAGTTACTTGAACAACTCTGTT-TTCGAAGAGCTCTT 321
||| ||||||||| ||||| |||||||| ||| |||||||||| ||| ||||||||||
Sbjct 172 AAAGCCCGCTTTGCGTTTCCAATAAGTTACCTGAGCAACTCTGTTATTC-AAGAGCTCTT 230
Query 322 GAAGATATCTGAAGAAGAGTTCGGCCTCAGGGCGGGTGGACCAATCACGTTGCCGTTCGA 381
||||||||||||||||||||| |||||| | | ||||| |||||| |||| |||||
Sbjct 231 GAAGATATCTGAAGAAGAGTTTGGCCTCCCCACAGAAGGACCGATCACGCTGCCATTCGA 290
Query 382 CTCGGTTTTCTTGGAGTATCTCATCAAATTTATCGAACGAAGAATGGATGGAGATACAGA 441
||| ||||||||||||||||||||||||| ||| || || |||||||||||||||||||
Sbjct 291 TTCGATTTTCTTGGAGTATCTCATCAAATTGATCAAAAGACGAATGGATGGAGATACAGA 350
Query 442 AAAAGCTCTTT-TAATGTCAATCTCTAGTGCTAGATGCTCT 481
||| | || || ||| | ||||||||||||||||||| |||
Sbjct 351 AAACG-TCCTTATAACGGCAATCTCTAGTGCTAGATGTTCT 390
> Ahg921991 jgi|Araly1|921991|scaffold_103272.1
Length=291
Score = 189 bits (102), Expect = 2e-47
Identities = 153/178 (86%), Gaps = 2/178 (1%)
Strand=Plus/Plus
Query 204 ctactactaGCAGCTCAACTGCTGTGGAGAAGGGCTGTTTCGTGGTTTACACGGT-TGAT 262
||||||||||||||||||| ||| ||||| |||||||| ||||||||||| | |||
Sbjct 115 CTACTACTAGCAGCTCAACCCCTGCAGAGAAAGGCTGTTTTGTGGTTTACAC-ATCCGAT 173
Query 263 AAAATCCGCTTTGCTTTTCCGTTAAGTTACTTGAACAACTCTGTTTTCGAAGAGCTCTTG 322
|||||||||||||| ||||| |||||||| ||| ||||||||||||| |||||||||||
Sbjct 174 AAAATCCGCTTTGCGTTTCCAATAAGTTACCTGAGCAACTCTGTTTTCCAAGAGCTCTTG 233
Query 323 AAGATATCTGAAGAAGAGTTCGGCCTCAGGGCGGGTGGACCAATCACGTTGCCGTTCG 380
|||||||||||||||||||| |||||| || ||||||||||||||||| ||||
Sbjct 234 AAGATATCTGAAGAAGAGTTTGGCCTCTCCACGTAAGGACCAATCACGTTGCCATTCG 291
> Ahg923547 jgi|Araly1|923547|scaffold_104828.1
Length=247
Score = 97.1 bits (52), Expect = 1e-19
Identities = 67/74 (91%), Gaps = 2/74 (3%)
Strand=Plus/Plus
Query 113 AAGATGGCCAAGAAATGGCAACAAAGAGCTGCCCTCAAGA-GGAAAAGAATCTCATTCCA 171
||||||||||||||||||||||||||||| ||| | ||| |||||||||||||||| ||
Sbjct 18 AAGATGGCCAAGAAATGGCAACAAAGAGCAGCCTT-AAGCCGGAAAAGAATCTCATTTCA 76
Query 172 AAGATCAactacta 185
|||||||||||||
Sbjct 77 GAGATCAACTACTA 90
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23331225204
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5