BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29470.1
Length=2817
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473159 jgi|Araly1|473159|fgenesh2_kg.1__3113__AT1G29470.1 4425 0.0
Ahg482372 jgi|Araly1|482372|fgenesh2_kg.4__1432__AT2G34300.1 1796 0.0
> Ahg473159 jgi|Araly1|473159|fgenesh2_kg.1__3113__AT1G29470.1
Length=2723
Score = 4425 bits (2396), Expect = 0.0
Identities = 2630/2740 (96%), Gaps = 28/2740 (1%)
Strand=Plus/Plus
Query 48 TTTTGGTGTGAAATCAGATCCAAATTCTGGTATTTTAACACCGTAACTATGCTGAGTAAC 107
|||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||
Sbjct 1 TTTTGGTGTGAAATCAGATCCAAAGTCTGGTATTTTAACACCGTAACAATGCAGAGTAAG 60
Query 108 TAGTACGATTGCTGCTCACTCACCACTTGCTCCTGCGATATAAAAACTTTGCAATCTAGT 167
||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 61 TAGTAAGATTGCTGCTCACTCACCACTTGCTCCTGCGATATATAAACTTAGCAATCTAGT 120
Query 168 AGGATCATTGTATCTTACTCTCTCTGGTTCTTTCTACTAGATCCGGATCTGGAACTTTCT 227
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 121 TGGATCATTGTATCTTACTCTCTC--CTTCTTTCTTCTAGATCCGGATCTGGAACTTTCT 178
Query 228 CTACTCTCTGCTCATAAAGTTTCATTCTTTGGGGAGATCTGAGGCAACCCTTTTTCTCTG 287
|||||||||||||||||||||||| || || ||| | | | | ||||||||||||
Sbjct 179 CTACTCTCTGCTCATAAAGTTTCAATC-TT-GGG-G--C----G--ATCCTTTTTCTCTG 227
Query 288 GTGCATGTGACTAGGGATTGTGCCGTGGGTTTAGGATCATGGCAATGGGGAAGTATTCTC 347
|||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 228 GTGCATGTGAGTAGGGATTGTGCCGTGGGTTTAGGAACATGGCAATGGGGAAATATTCTC 287
Query 348 GTGTAGACGGGAAGAAGTCATCGGGATATGGCTTAACCATTACCATCGTTTTAATTGTTT 407
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 288 GTGTAGACGGGAAGAAGTCATCGGGATATGGCTTAACCATTACCATTGTTTTAATTGTTT 347
Query 408 CTCTATGTTTGGTTGGGGCGTGGATGTTCATGTCTTCATGGTCTGCTCCAACTGAGTCTA 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 CTCTATGTTTGGTTGGGGCGTGGATGTTCATGTCTTCATGGTCTGCTCCAACTGAGTCTA 407
Query 468 TTGACTTCTCTGCAAACGAGAGGACAAAAGATGTAG--A-TACTACTAAGAGTGATTTCA 524
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
Sbjct 408 TTGACTTCTCTGCAAACGAGAGGACAAAAGATGTAGATACTACTACTAAGAGTGATTTTA 467
Query 525 AAAGTGAAGAGGTTGATC-GAGGTTCCAAGAGTTTTCCGGATGAAAAGAATGAGGAGACG 583
|||||||||| ||||| | ||||||||||||||||| |||||||||||||||| || ||
Sbjct 468 AAAGTGAAGAAGTTGA-CAGAGGTTCCAAGAGTTTTTCGGATGAAAAGAATGACGAAACT 526
Query 584 GAGGTTGTGACAGAGACCAACGAAGAGAAGACTGATCCTGAGAAATCTGGTGAGGAGAAC 643
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 527 GAGGTTGTGACAGAGAGCAACGAAGAGAAGACTGATCCCGAGAAATCTGGTGAGGAGAAC 586
Query 644 TCTGGTGAGAAAACGGAGTC-GGCTGA-GGAAAGAAAGGAGTTTGATGACAAAAATGGTG 701
|||||||||||||||||||| || ||| ||||| |||||| |||||||||||||||||||
Sbjct 587 TCTGGTGAGAAAACGGAGTCTGG-TGAGGGAAA-AAAGGAATTTGATGACAAAAATGGTG 644
Query 702 ATGGGGATAGAAAAAATGGAGACGGTGAGAAAGACACGGAATCAGAAAGTGATGAAACCA 761
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 645 ATGGGGATAGAAAAGATGGAGAGGGTGAGAAAGACACGGAATCAGAAAGTGATGAAGCCA 704
Query 762 AGCAAAAAGAGAAAACACAACTGGAAGAGAGCTCAGAAGAAAACAAATCTGAGGATAGTA 821
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 705 AGCAAAAAGAGAAAACACAACTGGAAGAGAGCTCAGAAGAAAACAAATCTGAGGATGGTA 764
Query 822 ATGGAACCGAAGAGAATGCTGGTGAATCTGAAGAAAACACCGAGAAGAAGTCAGAAGAAA 881
||||||| ||||| ||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 765 ATGGAACTGAAGAAAATACTGGTGAATCTGAAGAGAACACCGAGAAGAAGTCAGAAGAAA 824
Query 882 ACGCTGGTGAAACTGAAGAGAGCACTGAGAAGAGTAAGGATGTTTTCCCAGCTGGTGACC 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 ACGCTGGTGAAACTGAAGAGAGCACTGAGAAGAGTAAGGATGTTTTCCCAGCTGGTGACC 884
Query 942 AGGCTGAAATCACAAAGGAGTCAAGCACTGGAAGTGGGGCTTGGTCTACCCAATTGGTGG 1001
||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| |
Sbjct 885 AGGCTGAAATCACAAAGGAATCAAGCACTGGAAGTGGGGCCTGGTCTACCCAGTTGGTTG 944
Query 1002 AATCCCAGAACGAGAAGAAAGCACAAGTGTCCTCAATTAAATGGAAAGTCTGCAATGTGA 1061
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 AATCGCAGAACGAGAAGAAAGCACAAGTGTCCTCAATTAAATGGAAAGTCTGCAATGTGA 1004
Query 1062 CAGCTGGACCAGACTACATCCCTTGCCTTGACAATTGGCAAGCTATCAGAAAGCTTCATT 1121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 CAGCTGGACCAGACTACATCCCTTGCCTTGACAATTGGCAAGCTATCAGAAAGCTTCATT 1064
Query 1122 CGACAAAGCATTATGAACATCGTGAGAGGCATTGTCCCGAGGAGTCTCCACGCTGCCTTG 1181
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1065 CGACAAAGCATTATGAACATCGTGAGAGGCATTGTCCCGAGGAATCTCCACGCTGCCTTG 1124
Query 1182 TTTCTCTTCCCGAAGGGTATAAGCGATCCATCAAGTGGCCTAAGAGCAGAGAAAAGATCT 1241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 TTTCTCTTCCCGAAGGGTATAAGCGATCCATCAAGTGGCCTAAGAGCAGAGAAAAGATCT 1184
Query 1242 GGTACACCAATATTCCACACACCAAGCTTGCAGAAGTCAAGGGACATCAAAACTGGGTGA 1301
||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 GGTACACCAATGTCCCTCACACCAAGCTTGCAGAAGTCAAGGGACATCAAAACTGGGTGA 1244
Query 1302 AGATGAGTGGTGAATACTTAACATTCCCTGGTGGAGGTACTCAATTCAAGAATGGTGCTC 1361
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1245 AGATGAGTGGTGAATACTTAACATTCCCTGGTGGAGGCACTCAGTTCAAGAATGGTGCTC 1304
Query 1362 TTCACTACATTGATTTCCTCCAAGAGTCATATCCTGATATTGCTTGGGGAAATAGGACTC 1421
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1305 TTCACTACATTGATTTCCTCCAAGAGTCATATCCTGATATTGCGTGGGGAAATAGGACCC 1364
Query 1422 GTGTTATATTGGATGTTGGGTGTGGGGTTGCTAGCTTTGGGGGATATCTTTTTGACAGAG 1481
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1365 GTGTTATATTGGATGTTGGGTGTGGGGTTGCTAGCTTTGGGGGATATCTTTTTGATAGAG 1424
Query 1482 ATGTACTCGCTTTGTCATTTGCACCCAAAGACGAACACGAGGCACAGGTGCAATTTGCTC 1541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1425 ATGTACTCGCTTTGTCATTTGCACCCAAAGACGAACACGAGGCACAGGTGCAATTTGCTC 1484
Query 1542 TGGAACGTGGTATTCCTGCAATGTCAAATGTTATGGGAACCAAGAGATTACCTTTTCCAG 1601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1485 TGGAACGTGGTATTCCTGCAATGTCAAATGTTATGGGAACCAAGAGATTACCTTTTCCAG 1544
Query 1602 GATCTGTTTTTGACCTTATCCATTGTGCTCGTTGTAGAGTTCCTTGGCATATCGAAGGTG 1661
|||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1545 GATCTGTTTTCGACCTTATACATTGTGCTCGTTGTAGAGTCCCTTGGCATATCGAAGGTG 1604
Query 1662 GTAAACTACTTTTGGAGTTGAACCGTGCATTGAGGCCGGGTGGTTTCTTTGTCTGGTCAG 1721
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1605 GTAAACTACTTTTGGAGTTGAATCGTGCATTGAGGCCAGGTGGTTTCTTTGTCTGGTCAG 1664
Query 1722 CGACTCCAGTCTATAGGAAGACTGAGGAAGATGTTGGCATATGGAAAGCTATGTCGAAGC 1781
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1665 CGACTCCAGTCTACAGGAAGACTGAGGAAGATGTTGGCATATGGAAAGCTATGTCAAAGC 1724
Query 1782 TAACAAAGGCAATGTGCTGGGAACTGATGACGATTAAGAAAGATGAACTGAATGAAGTTG 1841
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1725 TAACAAAGGCAATGTGCTGGAAACTGATGACGATTAAGAAAGATGAACTGAATGAAGTTG 1784
Query 1842 GTGCTGCCATTTACCAGAAGCCAATGTCGAATAAATGCTACAATGAAAGATCTCAAAATG 1901
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1785 GTGCTGCCATTTACCAGAAGCCAATGTCGAATAAATGCTACAACGAAAGATCTCAAAATG 1844
Query 1902 AGCCACCTCTCTGCAAAGACTCTGATGATCAAAATGCCGCCTGGAATGTTCCACTTGAGG 1961
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1845 AGCCTCCTCTCTGCAAAGACTCTGATGATCAAAATGCCGCCTGGAATGTTCCACTTGAGG 1904
Query 1962 CATGTATTCACAAAGTAACAGAAGATTCATCAAAACGCGGAGCAGTTTGGCCTGAAAGTT 2021
||||||| |||| ||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1905 CATGTATGCACAGGGTAACAGAAGATTCATCAAAACGTGGAGCAGTGTGGCCTGAAAGTT 1964
Query 2022 GGCCGGAAAGAGTGGAGACGGTTCCTCAGTGGTTAGATTCTCAGGAAGGAGTATATGGAA 2081
|||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1965 GGCCAGAAAGAGTGGAGACTGTTCCTCAGTGGTTAGATTCTCAGGAAGGTGTATATGGAA 2024
Query 2082 AACCTGCACAAGAGGATTTCACAGCAGACCATGAACGCTGGAAGACTATTGTTTCAAAGT 2141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2025 AACCTGCACAAGAGGATTTCACAGCAGACCATGAACGCTGGAAGACTATTGTTTCAAAGT 2084
Query 2142 CATACCTCAACGGTATGGGAATCGATTGGTCTTATGTTAGAAATGTGATGGACATGAGAG 2201
| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2085 CTTACCTCAATGGTATGGGAATCGATTGGTCTTATGTGAGAAATGTGATGGACATGAGAG 2144
Query 2202 CAGTCTATGGAGGTTTTGCTGCTGCATTGAAGGATCTGAAACTGTGGGTGATGAATGTAG 2261
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2145 CTGTGTATGGAGGTTTTGCTGCTGCATTGAAGGATCTGAAACTGTGGGTGATGAATGTAG 2204
Query 2262 TTCCTATCGACTCACCTGATACCCTTCCGATTATATACGAACGTGGTTTGTTTGGAATCT 2321
| ||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 2205 TACCTATTGACTCACCTGATACACTTCCAATTATATACGAACGTGGTTTGTTTGGAATCT 2264
Query 2322 ATCATGATTGGTGTGAATCATTCAGCACTTACCCTCGGACTTACGACCTCCTTCACGCTG 2381
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2265 ATCATGATTGGTGTGAATCATTCAGCACTTACCCTCGGACTTACGACCTTCTTCACGCTG 2324
Query 2382 ATCATCTTTTCTCTTCACTGAAAAAGAGGTGCAACTTGGTGGGCGTGATGGCTGAAGTAG 2441
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 2325 ATCATCTTTTCTCTTCACTGAAAAAGAGGTGCAACTTGGTGGGGGTAATGGCTGAAGTAG 2384
Query 2442 ACCGGATTCTTAGACCACAAGGAACTTTCATAGTAAGAGATGACATGGAAACGATAGGAG 2501
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2385 ACCGAATTCTTAGACCACAAGGAACTTTCATAGTAAGAGATGACATGGAAACGATAGGAG 2444
Query 2502 AAATTGAGAAGATGGTGAAATCGATGAAATGGAATGTAAGAATGACACATTCCAAAGATG 2561
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2445 AAATTGAGAAGATAATGAAATCGATGAAATGGAATGTAAGAATGACACATTCCAAAGATG 2504
Query 2562 GAGAAGGATTGCTCTCTGTTCAGAAGTCATGGTGGCGTCCTACAGAGGCCGAGACCATTC 2621
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2505 GAGAAGGATTGCTCTCTGTTCAGAAGTCATGGTGGCGTCCTACAGAGGCCGAGACAATTC 2564
Query 2622 AGTCGGCAATAGCTTGAGATCAAGGAAACGAAGAAGAGTGTGGGTTAATATA-----GTC 2676
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 2565 AGTCGGCAATAGCCTGAGATCAAGGAAACGAAGAAGAGTGTGGGTTAATATAATATAGTC 2624
Query 2677 GACAGTTGTTCCTTTTACGATCCAATTGATTGTTTCTTACATGTATTAGTCGAATATTTG 2736
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2625 GACAGTTGTTCCTTTTACGATCCAATTGATTGTTTCTTACATGTATTAGTCGAATATT-G 2683
Query 2737 TATCCCTTTTTTGCATTGAAGAAAGTTGTATACAAGACAA 2776
||||||||||||||||||||||||||||||||||||||||
Sbjct 2684 TATCCCTTTTTTGCATTGAAGAAAGTTGTATACAAGACAA 2723
> Ahg482372 jgi|Araly1|482372|fgenesh2_kg.4__1432__AT2G34300.1
Length=2584
Score = 1796 bits (972), Expect = 0.0
Identities = 1564/1842 (85%), Gaps = 71/1842 (4%)
Strand=Plus/Plus
Query 864 AGAAGAAGTCAGAAGAAAACGCTGGTGAAACTGAAGAGAGCACTGAGAAGAGT---AAGG 920
|||| ||||| ||||| | ||| |||||| |||||| ||||| ||||||| | ||||
Sbjct 707 AGAA-AAGTCTGAAGAGAGTGCTAGTGAAATTGAAGAAAGCACGGAGAAGAATAACAAGG 765
Query 921 ATGT-TTTCCCAGCTGGTGACCAGGCTGAAATCACAAAGGAGTCAAGCACTGGAAG-TGG 978
| || ||| ||||||||||||||||| ||||| ||||| ||||| |||||||| || |||
Sbjct 766 ACGTCTTT-CCAGCTGGTGACCAGGCGGAAATTACAAAAGAGTCGAGCACTGG-AGATGG 823
Query 979 GGCTTGGTCTACCCAATTGGTGGAATCCCAGAACGAGAAGAAAGCACAAGTGTCCTC-A- 1036
|||||||| ||||||||||| || || ||||||||||||||||||||| |||||| |
Sbjct 824 AGCTTGGTCAACCCAATTGGTTGAGTCGCAGAACGAGAAGAAAGCACAACAGTCCTCGAT 883
Query 1037 AT-T---------A--A---ATGGA---AAGTC-TGCAATGTGACAGCTGGACCAGACTA 1077
|| | | | ||||| || | ||||||||||| ||||| ||||||||
Sbjct 884 ATCTAAGGACCAAAGTAGCTATGGATGGAAAACGTGCAATGTGACCGCTGGGCCAGACTA 943
Query 1078 CATCCCTTGCCTTGACAATTGGCAAGCTATCAGAAAGCTTCATTCGACAAAGCATTATGA 1137
||||||||||||||||| ||||||||||||| |||||||||| | |||| |||||||||
Sbjct 944 TATCCCTTGCCTTGACAACTGGCAAGCTATCAAAAAGCTTCATACTACAATGCATTATGA 1003
Query 1138 ACATCGTGAGAG-G-CATTGTCCCGAGGAGTCTCCACGCTGCCTTGTTTCTCTTCCCGAA 1195
||| | ||||| | |||||||| ||||| |||| || || ||||| ||||| || ||
Sbjct 1004 ACA-C-AGAGAGCGCCATTGTCCTGAGGAAACTCCTCGTTGTCTTGTGTCTCTGCCTGAT 1061
Query 1196 GGGTATAAGCGATCCATCAAGTGGCCTAAGAGCAGAGAAAAGATCTGGTACACCAATATT 1255
|| |||||||| |||||||||||||| |||||||| |||||||||||||||| |||| ||
Sbjct 1062 GGTTATAAGCGGTCCATCAAGTGGCCAAAGAGCAGGGAAAAGATCTGGTACAACAATGTT 1121
Query 1256 CCACACACCAAGCTTGCAGAAG-TCAAGGGACATCAAAACTGGGTGAAGATGAGTGGTGA 1314
|| |||||||||||||||| || |||||||||||||||| ||||||||||||||||||||
Sbjct 1122 CCCCACACCAAGCTTGCAG-AGATCAAGGGACATCAAAATTGGGTGAAGATGAGTGGTGA 1180
Query 1315 ATA-CTTAACATTCCCTGGTGGAGGTACTCAATTCAAGAATGGTGCTCTTCACTACATTG 1373
| | ||| || || |||||||| |||||||| || ||||||||||||||||| |||||||
Sbjct 1181 ACATCTT-ACCTTTCCTGGTGGTGGTACTCAGTTTAAGAATGGTGCTCTTCATTACATTG 1239
Query 1374 ATTTCCTCCAAGAGTCATATCCTGATATTGCTTGGGGAAATAGGACTCGTGTTATATTGG 1433
||||| | ||| ||||| |||||| ||||| ||||||||||| || |||||||||||||
Sbjct 1240 ATTTCATTCAACAGTCACATCCTGCCATTGCATGGGGAAATAGAACCCGTGTTATATTGG 1299
Query 1434 ATGTTGGGTGTGGGGTTGCTAGCTTTGGGGGATATCTTTTTGACAGAGATGTACTCGCTT 1493
|||| |||||||| |||||||||||||| || || ||||| || |||||||| || ||||
Sbjct 1300 ATGTCGGGTGTGGAGTTGCTAGCTTTGGTGGTTACCTTTTCGAAAGAGATGTGCTTGCTT 1359
Query 1494 TGTCATTTGCACCCAAAGACGAACACGAGGCACAGGTGCAATTTGCTCTGGAACGTGGTA 1553
|||||||||| ||||| || || || ||||| || |||||||| || |||||||||||||
Sbjct 1360 TGTCATTTGCTCCCAAGGATGAGCATGAGGCGCAAGTGCAATTCGCGCTGGAACGTGGTA 1419
Query 1554 TTCCTGCAATGTCAAATGTTATGGGAACCAAGAGATTACCTTTTCCAGGATCTGTTTTTG 1613
|||||||||||| |||||||||||||||||| |||||||| ||||| || ||||||||||
Sbjct 1420 TTCCTGCAATGTTAAATGTTATGGGAACCAAAAGATTACCCTTTCCCGGTTCTGTTTTTG 1479
Query 1614 ACCTTATCCATTGTGCTCGTTGTAGAGTTCCTTGGCATATCGAAGGTGGTAAACTACTTT 1673
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||
Sbjct 1480 ACCTTATCCATTGTGCTCGTTGTAGAGTCCCTTGGCATATTGAAGGTGGTAAACTTCTTT 1539
Query 1674 TGGAGTTGAACCGTGCATTGAGGCCGGGTGGTTTCTTTGTCTGGTCAGCGACTCCAGTCT 1733
|||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1540 TGGAATTGAATCGTGCTTTGAGGCCGGGTGGTTTCTTTGTCTGGTCAGCGACTCCAGTCT 1599
Query 1734 ATAGGAAGA-CTGAGGAAGATGT-TGGCATATGGAAAGCTATGTCGAAGCTAACAAAGGC 1791
||||||||| | ||||||||| | ||| ||||||||||| ||||||||||| ||||||||
Sbjct 1600 ATAGGAAGAAC-GAGGAAGAT-TCTGGTATATGGAAAGCAATGTCGAAGCTCACAAAGGC 1657
Query 1792 AATGTGCTGGGAA-CTGATGACGATTAAGAAAGATGAACTGAATGAAGTTGGTGCTGCCA 1850
|||||| ||| || ||| |||| ||||||||||| |||||||||| |||||||||||||
Sbjct 1658 AATGTGTTGG-AAGCTGGTGACAATTAAGAAAGACAAACTGAATGAGGTTGGTGCTGCCA 1716
Query 1851 TTTACCAGAAGCCAA-TGTCGAATAAATGCTACAATGAAAGATCTCAAAATGAGCCACCT 1909
| ||||| ||||||| | || |||||||| ||||| ||||| |||||||||| ||||||
Sbjct 1717 TATACCAAAAGCCAACT-TCAAATAAATGTTACAACAAAAGACCTCAAAATGATCCACCT 1775
Query 1910 CTCTGCAAAGACTCTGATGATCAAAATGCCGCCTGGAATGTTCCACTTGAGGCATGTATT 1969
|||||||| || || |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1776 CTCTGCAAGGATTCCGATGATCAAAATGCAGCCTGGAATGTTCCACTTGAGGCATGTATG 1835
Query 1970 CACAAAGTAACAGAAGATTCATCAAAACGCGGAGCAGTTTGGCCTGAA-A-GTTGGCCGG 2027
|| ||||| ||||||||||||||||| || |||||||| ||||| || | || |||| |
Sbjct 1836 CATAAAGTGACAGAAGATTCATCAAAGCGAGGAGCAGTGTGGCCA-AACATGT-GGCCAG 1893
Query 2028 AAAGAGTGGAGACGGTTCCTCAGTGGTTAGATTCTCAGGAAGGAGTATATGGAAAACCTG 2087
| || || ||||| | ||| ||||||| ||||| |||||||| || |||||||||||||
Sbjct 1894 AGAGGGTTGAGACTGCACCTGAGTGGTTGGATTCACAGGAAGGTGTTTATGGAAAACCTG 1953
Query 2088 CACAAGAGGATTTCACAGCAGACCATGA-ACGCTGGAAGACTATTGTTTCAAAGTCATAC 2146
||| ||||||||||||||||||||| || | | ||||| |||||||| ||||||||||||
Sbjct 1954 CACCAGAGGATTTCACAGCAGACCAAGAGAAG-TGGAAAACTATTGTCTCAAAGTCATAC 2012
Query 2147 CTCAACGGTATGGGAATCGATTGGTCTTATGTTAGAAATGTGATGGACATGAGAGCAGTC 2206
|| || | |||||||||||||||||| |||| |||||||||||||| ||||||||||||
Sbjct 2013 CTTAATGACATGGGAATCGATTGGTCTAATGTGAGAAATGTGATGGATATGAGAGCAGTC 2072
Query 2207 TATGGAGGTTTTGCTGCTGCATTGAAGGATCTGAAACTGTGGGTGATGAATGTAGTTCCT 2266
|||||||| |||||||||||||||||||||||||| | ||||||||||| || ||||||
Sbjct 2073 TATGGAGGATTTGCTGCTGCATTGAAGGATCTGAAGTTATGGGTGATGAACGTGGTTCCT 2132
Query 2267 ATCGACT-CACCTGATACCCTTCCGATTATATACGAACGTGGTTTGTTTGGAATCTATCA 2325
| || | | || ||||| ||||| || ||||| ||||||||||| ||||||||||||||
Sbjct 2133 GTGGA-TGCGCCAGATACACTTCCCATCATATATGAACGTGGTTTATTTGGAATCTATCA 2191
Query 2326 TGATTGGTGTGAATCATTCAGCACTTACCCTCGGACTTACGACCTCCTTCACGCTGATCA 2385
|||||||||||||||||||| |||||| || | ||||||||||| || || || |||||
Sbjct 2192 TGATTGGTGTGAATCATTCAACACTTATCCGAGAACTTACGACCTTCTCCATGCCGATCA 2251
Query 2386 TCTTTTCTCTTCACTGAAAAAGAGGTGCAACTTGGTGGGCG-TGATGGCTGAAGTAGACC 2444
|||||||||| | |||| ||||||||||| |||||| || | ||||||||| | || |
Sbjct 2252 TCTTTTCTCTACCCTGAGGAAGAGGTGCAATTTGGTGT-CGGTAATGGCTGAAATTGATC 2310
Query 2445 GGATTCTTAGACCACAAGGAACTTTCAT-AGTAAGAGATGACATGGAAACGAT-AGGAGA 2502
|||||||||| ||||| ||||||||||| | |||| || ||||||||||| || ||||||
Sbjct 2311 GGATTCTTAGGCCACAGGGAACTTTCATCA-TAAGGGACGACATGGAAAC-ATTAGGAGA 2368
Query 2503 AATTGAGAAGATGGTGAAATCGATGAAATGGAATGT-AAGAATGACACATTCCAAAGATG 2561
| ||||||| ||||||||||| ||||||||||| || || |||||| || || |||||
Sbjct 2369 AGTTGAGAAAATGGTGAAATCCATGAAATGGAAGGTTAA-AATGACGCAGTCAAAAGACA 2427
Query 2562 GA-GAAGGATTGCTCTCTG-TTCAGAAGTCATGGTGGCGTCCTACAGAGGCCGAGACCAT 2619
| ||||| ||||| || | |||| |||||||||||||||||| |||| | ||||| ||
Sbjct 2428 -ATGAAGGCTTGCTTTC-GATTCAAAAGTCATGGTGGCGTCCTGCAGAAACTGAGACAAT 2485
Query 2620 TCAG-TCGGCAATAGCTTGAGATCAAG--GAAACGAAGAAGA 2658
|| |||||||| |||| | | |||| | |||||| ||||
Sbjct 2486 -CAAATCGGCAATCGCTTAA-A-CAAGTCGGAACGAAAAAGA 2524
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106309873795
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5