BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29480.1
Length=678
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923549 jgi|Araly1|923549|scaffold_104830.1 473 6e-133
Ahg921990 jgi|Araly1|921990|scaffold_103271.1 446 1e-124
Ahg336050 jgi|Araly1|336050|fgenesh1_pg.C_scaffold_1002615 429 1e-119
> Ahg923549 jgi|Araly1|923549|scaffold_104830.1
Length=958
Score = 473 bits (256), Expect = 6e-133
Identities = 402/469 (86%), Gaps = 24/469 (5%)
Strand=Plus/Plus
Query 214 ACAACAACAAA-GTTGACAAAACCGGAGGAAA-CAATCACGGCTTCTTCGAAAGAGTGTC 271
||||||||||| ||| || |||||||| |||| |||| |||||||| ||||||||||||
Sbjct 417 ACAACAACAAAGGTT-ACTAAACCGGA-GAAATCAATTACGGCTTCCTCGAAAGAGTGTT 474
Query 272 TTCAAGAAACAAAGACGAATAAG---AA---GCCTGATTTGAGAGACTTGATCGCCAAGG 325
|||| |||||| ||||||| ||| || | |||||||||| |||||||||| ||||
Sbjct 475 TTCACGAAACAGAGACGAAGAAGCCTAATGGGATTGATTTGAGAAACTTGATCGCAAAGG 534
Query 326 CACAAGAAAAAATCCAAAACAAAAGGGAGATTAATCATCGAAGAGAATACATCACAAGAC 385
| ||||| ||||||||||||||| || |||| ||||||||||||| |||||||||| |
Sbjct 535 CGCAAGATAAAATCCAAAACAAACGGCAGATCGATCATCGAAGAGACGACATCACAAGGC 594
Query 386 AGAGGATAGCTGCACGCTTAGCTCTAAACCAGATGGTAGCAACCGTTAGCTTTGACGATC 445
|||| ||||||||||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct 595 AGAGAATAGCTGCACGCTTAGCTCTAAATCAAATGGTAGCAACCGTTAGTTTTGACGATC 654
Query 446 ATCTCAACTATCATAGAGAAATGGAACAGCGTGGCTACACATTTATTCAAGATCAAGTTG 505
|||||||||||||||||||| ||||||||| |||||||||||| |||||||| ||||||
Sbjct 655 ATCTCAACTATCATAGAGAACTGGAACAGCTTGGCTACACATTCATTCAAGAGGAAGTTG 714
Query 506 ATAACTTGAACATGTTCAGTTTATGGTCAAGAAGCGATTACAATGGTATCACTAACTCTG 565
|| |||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 715 ATTACTTGAGCATGTTCAATTTATGGTCAAGAAGCGACTACAATGGTATCACTAACTCTG 774
Query 566 TCTTGGAAACGAGCAATACGACAATGCGGTCTGATGAAGATTCATCGAGAAAGAAGCA-- 623
||||||||| || ||| ||| || || | ||||||||||||||| |||||||||| ||
Sbjct 775 TCTTGGAAAAGAACAAAACGCCA-TG-G-TCTGATGAAGATTCAACGAGAAAGAAACATC 831
Query 624 G-CAGA--TCATCaaaa--aaa-aG-A-GCAACA-CATTCCCTACAGAT 663
| |||| ||| ||||| ||| || | | | || |||||||| |||||
Sbjct 832 GTCAGAGCTCAACAAAAGGAAATAGTATGGAGCAGCATTCCCTGCAGAT 880
> Ahg921990 jgi|Araly1|921990|scaffold_103271.1
Length=975
Score = 446 bits (241), Expect = 1e-124
Identities = 403/478 (84%), Gaps = 24/478 (5%)
Strand=Plus/Plus
Query 214 ACAACAACAAA-GTTGACAAAACCGGAGGAAA-CAATCACGGCTTCTTCGAAAGAGTGTC 271
||||||||||| ||| || |||||||| |||| |||| || |||||||||||||||||||
Sbjct 420 ACAACAACAAAGGTT-ACTAAACCGGA-GAAATCAATTACAGCTTCTTCGAAAGAGTGTC 477
Query 272 TTCAAGAAACAAAGACGAATAAG---AA---GCCTGATTTGAGAGACTTGATCGCCAAGG 325
|||| |||||| |||| || ||| || | |||||||||| |||||||||| ||||
Sbjct 478 TTCACGAAACAGAGACAAAGAAGCCTAATGGGATTGATTTGAGAAACTTGATCGCAAAGG 537
Query 326 CACAAGAAAAAATCCAAAACAAAAGGGAGATTAATCATCGAAGAGAATACATCACAAGAC 385
| ||||| ||||||||||||||| || |||| | ||||||||||| |||||||||| |
Sbjct 538 CGCAAGATAAAATCCAAAACAAACGGCAGATCGACCATCGAAGAGACGACATCACAAGGC 597
Query 386 AGAGGATAGCTGCACGCTTAGCTCTAAACCAGATGGTAGCAACCGTTAGCTTTGACGATC 445
|||| |||| |||||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct 598 AGAGAATAGATGCACGCTTAGCTCTAAATCAAATGGTAGCAACCGTTAGTTTTGACGATC 657
Query 446 ATCTCAACTATCATAGAGAAATGGAACAGCGTGGCTACACATTTATTCAAGATCAAGTTG 505
||||||||||||| |||||| ||||||||| ||| | |||||| |||||||| ||||||
Sbjct 658 ATCTCAACTATCACAGAGAACTGGAACAGCTTGGGTGCACATTCATTCAAGAGGAAGTTG 717
Query 506 ATAACTTGAACATGTTCAGTTTATGGTCAAGAAGCGATTACAATGGTATCACTAACTCTG 565
|| |||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 718 ATCACTTGAGCATGTTCAATTTATGGTCAAGAAGCGACTACAATGGTATCACTAACTCTG 777
Query 566 TCTTGGAAACGAGCAATACGACAATGCGGTCTGATGAAGATTCATCGAGAAAGAAGCA-- 623
||||||||| || ||| ||| || || | |||||||||||||| |||||||||| ||
Sbjct 778 TCTTGGAAAAGAACAAAACGCCA-TG-GC-CTGATGAAGATTCAACGAGAAAGAAACATC 834
Query 624 G-CAGA--TCATCaaaa--aaa-aG-A-GCAACA-CATTCCCTACAGATGTCAAAGAA 672
| |||| ||| ||||| ||| || | | | || |||||||| ||||| |||||||
Sbjct 835 GTCAGAGCTCAACAAAAGGAAATAGTATGGAGCAGCATTCCCTGCAGATAACAAAGAA 892
> Ahg336050 jgi|Araly1|336050|fgenesh1_pg.C_scaffold_1002615
Length=936
Score = 429 bits (232), Expect = 1e-119
Identities = 402/480 (84%), Gaps = 28/480 (6%)
Strand=Plus/Plus
Query 214 ACAACAACAAA-GTTGACAAAACCGGAGGAAA-CAATCACGGCTTCTTCGAAAGAGTGTC 271
||||||||||| ||| || |||||||| |||| |||| || |||||||||||||| |||
Sbjct 403 ACAACAACAAAGGTT-ACTAAACCGGA-GAAATCAATTACAACTTCTTCGAAAGAGAGTC 460
Query 272 TTCAAGAAACAAAGAC---G-AA--TAA-GAAGCCTGATTTGAGAGACTTGATCGCCAAG 324
|||| ||| || |||| | || ||| | | |||||||||| |||||||||| |||
Sbjct 461 TTCACGAATCAGAGACAAAGAAACCTAATG-GGATTGATTTGAGAAACTTGATCGCAAAG 519
Query 325 GCACAAGAAAAAATCCAAAACAAAAGGGAGATTAATCATCGAAGAGAAT-ACATCACAAG 383
|| ||||| ||||||||||||||| || |||| | |||||||||| || ||||||||||
Sbjct 520 GCGCAAGATAAAATCCAAAACAAACGGCAGATCGACCATCGAAGAG-ATGACATCACAAG 578
Query 384 ACAGAGGATAGCTGCACGCTTAGCTCTAAACCAGATGGTAGCAACCGTTAGCTTTGACGA 443
||||| ||||||||||||||||||||||| || |||||||||||| |||| ||||||||
Sbjct 579 GCAGAGAATAGCTGCACGCTTAGCTCTAAATCAAATGGTAGCAACCATTAGTTTTGACGA 638
Query 444 TCATCTCAACTATCATAGAGAAATGGAACAGCGTGGCTACACATTTATTCAAGATCAAGT 503
||||||||||||||| |||||| ||||||||| |||| ||||||| |||||||| ||||
Sbjct 639 TCATCTCAACTATCACAGAGAACTGGAACAGCTTGGCCACACATTCATTCAAGAGGAAGT 698
Query 504 TGATAACTTGAACATGTTCAGTTTATGGTCAAGAAGCGATTACAATGGTATCACTAACTC 563
|||| |||||| |||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 699 TGATCACTTGAGCATGTTCAATTTATGGTCAAGAAGCGACTACAATGGTATCACTAACTC 758
Query 564 TGTCTTGGAAACGAGCAATACGACAATGCGGTCTGATGAAGATTCATCGAGAAAGAAGCA 623
||||||||||| || ||| ||| || || | |||||||||||||| |||||||||| ||
Sbjct 759 TGTCTTGGAAAAGAACAAAACGCCA-TG-GC-CTGATGAAGATTCAACGAGAAAGAAACA 815
Query 624 --G-CAGA--TCATCaaaa--aaa-aG-A-GCAACA-CATTCCCTACAGATGTCAAAGAA 672
| |||| ||| ||||| ||| || | | | || |||||||| ||||| |||||||
Sbjct 816 TCGTCAGAGCTCAACAAAAGGAAATAGTATGGAGCAGCATTCCCTGCAGATAACAAAGAA 875
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24894264801
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5