BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29490.1
Length=659
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473153 jgi|Araly1|473153|fgenesh2_kg.1__3107__AT1G29490.1 606 5e-173
Ahg473154 jgi|Araly1|473154|fgenesh2_kg.1__3108__AT5G27780.1 422 2e-117
Ahg912754 jgi|Araly1|912754|Al_scaffold_0001_3008 350 1e-95
Ahg921991 jgi|Araly1|921991|scaffold_103272.1 315 3e-85
Ahg921978 jgi|Araly1|921978|scaffold_103259.1 237 8e-62
Ahg473157 jgi|Araly1|473157|fgenesh2_kg.1__3111__AT1G29460.1 176 2e-43
> Ahg473153 jgi|Araly1|473153|fgenesh2_kg.1__3107__AT1G29490.1
Length=491
Score = 606 bits (328), Expect = 5e-173
Identities = 438/489 (90%), Gaps = 16/489 (3%)
Strand=Plus/Plus
Query 83 CTAAACATAATGATGAACACAAAGAAACTCATGAAGATGGCCAAGAAATGGCAACAGAGA 142
||||| | |||||||||||||||||| || || ||||||||||||||||||||| ||| |
Sbjct 11 CTAAA-AAAATGATGAACACAAAGAAGCTAATCAAGATGGCCAAGAAATGGCAAAAGAAA 69
Query 143 GCAGCCTTAAGGAGGAAAAGAATCTCATTCCAGAGATCAAATTCTACTACTAGTAGCTCA 202
||||| ||||| ||||||||||||||||| |||||||||| | |||| ||||| ||||||
Sbjct 70 GCAGCATTAAGCAGGAAAAGAATCTCATTTCAGAGATCAAGTACTACCACTAGCAGCTCA 129
Query 203 TCCGC-GGTAGAGAAGGGCTGTTTTGTGGTTTACACTGCGGATCAAGTACGCTTTGCTTT 261
||||| || ||||||||| |||||||| |||||||| | |||| ||| |||||||| ||
Sbjct 130 TCCGCAGG-AGAGAAGGGTTGTTTTGTAGTTTACACGGTGGATAAAGCCCGCTTTGCGTT 188
Query 262 TCCGATAAGTTACCTGAGTAACTCTGTTATTCAAGAGCTCTTGAAGATATCTGAAGAAGA 321
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 189 TCCAATAAGTTACCTGAGCAACTCTGTTATTCAAGAGCTCTTGAAGATATCTGAAGAAGA 248
Query 322 GTTTGGTATTCCCACAGAAGGACCAATCACGTTGCCATTCGATTCGATTCGATTTTCTTG 381
|||||| | |||||||||||||| |||||| || | | |||||||||||||||||||
Sbjct 249 GTTTGGCCTCCCCACAGAAGGACCGATCACGCTG-C---C-ATTCGATTCGATTTTCTTG 303
Query 382 GAGTATCTCATCAAATTGATCAAAAGACGAATGGATGGAGATACAGAAAACGCTC-TTAT 440
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 304 GAGTATCTCATCAAATTGATCAAAAGACGAATGGATGGAGATACAGAAAACG-TCCTTAT 362
Query 441 AACGGCAATCTCTAGTGCTAGATGTTCTTCACAATGCTCTATGCAACTTCAAAAACATAC 500
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 363 AACGGCAATCTCTAGTGCTAGATGTTCTTCACAATGCTCTATGCAACTTGAGGAACATAG 422
Query 501 TAGTACTCAGC-TT-G-T-GT-TTT-AGAGAATTAGTATCAAGCAATTTCTTTGTTTGTA 554
|||| |||||| || | | || ||| ||||||||||| ||||||||| ||||||||||||
Sbjct 423 TAGTGCTCAGCGTTTGCTTGTATTTTAGAGAATTAGTGTCAAGCAATATCTTTGTTTGTA 482
Query 555 AAGATTCTA 563
|||||||||
Sbjct 483 AAGATTCTA 491
> Ahg473154 jgi|Araly1|473154|fgenesh2_kg.1__3108__AT5G27780.1
Length=438
Score = 422 bits (228), Expect = 2e-117
Identities = 350/408 (86%), Gaps = 12/408 (3%)
Strand=Plus/Plus
Query 92 ATGATGAACACAAAGAAACTCATGAAGATGGCCAAGAAATGGCAACAGAGAGCAGCCTTA 151
||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||
Sbjct 4 ATGATGAACACAAAGAAGCTCTTGAAGATGGCCAAGAAATGGCAACAAAGAGCAGCCTTC 63
Query 152 AGGAGGAAAAGAATCTCATTCCAGAGATCAAATTCTACTACTAGTAGCTCATCCGCGGTA 211
|| ||||||||||||||||| ||||| |||| | || | |||| |||||| || | |||
Sbjct 64 AGCAGGAAAAGAATCTCATTTCAGAGTTCAAGTGCT--T-CTAGCAGCTCAACCACTGTA 120
Query 212 GAGAAGGGCTGTTTTGTGGTTTACACTGCGGATCAAGTACGCTTTGCTTTTCCGATAAGT 271
|||||||| ||||| ||||||||||| || ||| || | |||||||||||||| |||||
Sbjct 121 GAGAAGGGTTGTTTCGTGGTTTACACGGCAGATAAAATCCGCTTTGCTTTTCCTTTAAGT 180
Query 272 TACCTGAGTAACTCTGTTATTCAAGAGCTCTTGAAGATATCTGAAGAAGAGTTTGGTATT 331
|||||||| ||| || || | |||||||||||||| ||||||||||||||||||||| |
Sbjct 181 TACCTGAGCAACCCTATTGTCCAAGAGCTCTTGAAAATATCTGAAGAAGAGTTTGGT-CT 239
Query 332 CCC-ACAGAAGGACCAATCACGTTGCCATTCGATTCGATTCGATTTTCTTGGAGTATCTC 390
||| ||||||||||||||||| ||| |||||||||| || |||| || | |||||||
Sbjct 240 CCCGACAGAAGGACCAATCACATTGACATTCGATTC----CGCTTTT-TTAGCGTATCTC 294
Query 391 ATCAAATTGATCAAAAGACGAATGGATGGAGATACAGAAAACGCTCT-TATAACGGCAAT 449
|||| ||||||| |||||||||||||||||||||||||||| ||||| | || | ||||
Sbjct 295 ATCAGATTGATCGAAAGACGAATGGATGGAGATACAGAAAAGGCTCTGT-TATTGTCAAT 353
Query 450 CTCTAGTGCTAGATGTTCTTCACAATGCTCTATGCAACTTCAAAAACA 497
|||||||||||||||||||| |||||| ||| |||||| |||||||
Sbjct 354 CTCTAGTGCTAGATGTTCTTTACAATGTTCTCTGCAACGAGAAAAACA 401
> Ahg912754 jgi|Araly1|912754|Al_scaffold_0001_3008
Length=573
Score = 350 bits (189), Expect = 1e-95
Identities = 307/361 (85%), Gaps = 20/361 (6%)
Strand=Plus/Plus
Query 116 AAGATGGCCAAGAAATGGCAACAGAGAGCAGCCTTAAGGA-GGAAAAGAATCTCA-TTCC 173
||||||||||||||||||||||| ||||||||||| || | |||||||||||||| || |
Sbjct 177 AAGATGGCCAAGAAATGGCAACAAAGAGCAGCCTTCAGCATGGAAAAGAATCTCACTT-C 235
Query 174 AGA-GATCAAATTCTACTACTAGTAGCTCATCCGCGGTAGAGAAGGGCTGTTTTGTGGTT 232
||| | |||| | |||||||||| |||||| || | ||||||||| | ||||| ||||||
Sbjct 236 AGACG-TCAAGTGCTACTACTAGCAGCTCAACCACTGTAGAGAAGCGTTGTTTCGTGGTT 294
Query 233 TACACTGCGGATCAAGTACGCTTTGCTTTT-CCGATAAGTTACCTGAGTAACTCTGTTAT 291
||||| || ||| ||| ||| |||| |||| || | ||| |||||||| ||||||||| |
Sbjct 295 TACACGGCAGATAAAGCACGTTTTG-TTTTCCCAAAAAGCTACCTGAGCAACTCTGTT-T 352
Query 292 T-CAAGAGCTCTTGAAGATATCTGAAGAAGAGTTTGGTATTC-CCA-CAGAAGGACCAAT 348
| |||||| |||||||||||||||||||||||||||| || ||| | || ||| ||||
Sbjct 353 TCCAAGAGGTCTTGAAGATATCTGAAGAAGAGTTTGG-CCTCTCCAGC-GATGGAGCAAT 410
Query 349 CACGTTGCCATTCGATTCGATTCGATTTTCTTGGAGTATCTCATCAAATTGATCAAAAGA 408
||| ||| | | |||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 411 CACATTG--A--C-ATTCGATTCGGTTTTCTTGGAGTATCTCATCAAATTGATCCAACGA 465
Query 409 CGAATGGATGGAGATACAGAAAACGCTCT-TATAACGGCAATCTCTAGTGCTAGATGTTC 467
|||||||| |||||||||||||| ||||| | ||| | ||||||||||||||||||||||
Sbjct 466 CGAATGGAGGGAGATACAGAAAAGGCTCTGT-TAATGTCAATCTCTAGTGCTAGATGTTC 524
Query 468 T 468
|
Sbjct 525 T 525
> Ahg921991 jgi|Araly1|921991|scaffold_103272.1
Length=291
Score = 315 bits (170), Expect = 3e-85
Identities = 254/293 (87%), Gaps = 12/293 (4%)
Strand=Plus/Plus
Query 76 CTTCTCCCTAAACATAATGATGAACACAAAGAAACTCATGAAGATGGCCAAGAAATGGCA 135
||| || ||| | |||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 5 CTTTTCTCTAGATATAATGATGAACACAAAGAAGCTCTTGAAGATGGCCAAGAAATGGCA 64
Query 136 ACAGAGAGCAGCCTTAAGGAGGAAA-AGAATCTCATTCCAGAGATCAAAT-TCTACTACT 193
||||||||| |||||||| | |||| ||||||||||| ||||||| | | ||||||||
Sbjct 65 ACAGAGAGCTGCCTTAAGCA-GAAAGAGAATCTCATTTGAGAGATC-AGTAGCTACTACT 122
Query 194 AGTAGCTCATCCGCGGTAGAGAAGGGCTGTTTTGTGGTTTACAC-TGCGGATCAAGTACG 252
|| |||||| || | | |||||| |||||||||||||||||||| | | ||| || | ||
Sbjct 123 AGCAGCTCAACCCCTGCAGAGAAAGGCTGTTTTGTGGTTTACACAT-CCGATAAAATCCG 181
Query 253 CTTTGCTTTTCCGATAAGTTACCTGAGTAACTCTGTTATT-CAAGAGCTCTTGAAGATAT 311
|||||| ||||| |||||||||||||| ||||||||| || |||||||||||||||||||
Sbjct 182 CTTTGCGTTTCCAATAAGTTACCTGAGCAACTCTGTT-TTCCAAGAGCTCTTGAAGATAT 240
Query 312 CTGAAGAAGAGTTTGGTAT-TCCCACAG-AAGGACCAATCACGTTGCCATTCG 362
|||||||||||||||| | ||| || | ||||||||||||||||||||||||
Sbjct 241 CTGAAGAAGAGTTTGGCCTCTCC-AC-GTAAGGACCAATCACGTTGCCATTCG 291
> Ahg921978 jgi|Araly1|921978|scaffold_103259.1
Length=338
Score = 237 bits (128), Expect = 8e-62
Identities = 268/332 (81%), Gaps = 23/332 (7%)
Strand=Plus/Plus
Query 89 ATAATGATGAACACAAAGAAACTCATGAAGATGGCCAAGAAATGGCAACAGAGAGCAGC- 147
|||||||||||||||||||| || || |||||| || | |||||||||||||||||||
Sbjct 22 ATAATGATGAACACAAAGAAGCTAATCAAGATGTTCAGGGAATGGCAACAGAGAGCAGCT 81
Query 148 CTTAAGGAGGAAAAGAATCTCATTCCAG-AGATCAAATTCTACTACTAGTAGCTCATCCG 206
|| | ||||||||||||||||| ||| || |||| | |||| | || |||| | | |
Sbjct 82 CTCCA-CAGGAAAAGAATCTCATTTCAGAAG-TCAAGTGCTAC--C-AGCAGCTTAACAG 136
Query 207 CGGTAGAGAAGGGCTGTTTTGTGGTTTACACTGCGGATCAA-GTACGCTTTGCTTTTCCG 265
| ||||||||||| || ||||| |||||||| |||||| || |||||||||||||||
Sbjct 137 CTGTAGAGAAGGGATGCTTTGTAGTTTACACGGCGGAT-AACACACGCTTTGCTTTTCCT 195
Query 266 ATAAGTTACCTGAGTAACTCTGTTATTCAAGAGCTCTTGAAGATATCTGAAGAAGAGTTT 325
|||||| || |||| ||||||||| ||||||||||| |||||||||||||||||
Sbjct 196 ATAAGTAACTTGAGCAACTCTGTTTTTCAAGAGCTC-------TATCTGAAGAAGAGTTT 248
Query 326 GGTATTCCC-ACAGAAGGACCAATCACGTTGCCATTCGATTCGATTCGATTTTCTTGGAG 384
|| |||| || | |||||||| || ||||| ||||| || | | ||||||||||
Sbjct 249 GG-CCTCCCAACCGGTGGACCAATTACATTGCCGTTCGAATC-A---G-CTTTCTTGGAG 302
Query 385 TATCTCATCAAATTGATCAAAAGACGAATGGA 416
|||||||||||||||||| ||||| |||||||
Sbjct 303 TATCTCATCAAATTGATCGAAAGAAGAATGGA 334
> Ahg473157 jgi|Araly1|473157|fgenesh2_kg.1__3111__AT1G29460.1
Length=469
Score = 176 bits (95), Expect = 2e-43
Identities = 158/187 (84%), Gaps = 10/187 (5%)
Strand=Plus/Plus
Query 92 ATGATGAACACAAAGAAACTCA-TGAAGATGGCCAAGAAATGGCAACAGAGAGCAGCCTT 150
||||| ||||| |||||||| | | ||||||||||||||||||||||||||||||||| |
Sbjct 23 ATGATCAACACTAAGAAACT-ACTCAAGATGGCCAAGAAATGGCAACAGAGAGCAGCCCT 81
Query 151 A-AGGAGGAAAAGAATCTCATTCCAGAGATCAAAT--T-CTACTACTAGTAGC---TCAT 203
| | ||||||||||| ||||| |||||||||| | | |||||||||||||| ||||
Sbjct 82 ACAC-AGGAAAAGAATATCATTTCAGAGATCAAGTACTACTACTACTAGTAGCAGCTCAT 140
Query 204 CCGCGGTAGAGAAGGGCTGTTTTGTGGTTTACACTGCGGATCAAGTACGCTTTGCTTTTC 263
| || || |||||||||||||| ||||||||||| | ||| || | |||||||||||||
Sbjct 141 CTGCTGTGGAGAAGGGCTGTTTCGTGGTTTACACGGTTGATAAAATCCGCTTTGCTTTTC 200
Query 264 CGATAAG 270
| |||||
Sbjct 201 CCATAAG 207
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24169929378
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5