BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29500.1
Length=655
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473156 jgi|Araly1|473156|fgenesh2_kg.1__3110__AT1G29450.1 459 2e-128
Ahg921978 jgi|Araly1|921978|scaffold_103259.1 385 3e-106
Ahg473153 jgi|Araly1|473153|fgenesh2_kg.1__3107__AT1G29490.1 366 9e-101
Ahg473154 jgi|Araly1|473154|fgenesh2_kg.1__3108__AT5G27780.1 361 4e-99
Ahg912754 jgi|Araly1|912754|Al_scaffold_0001_3008 331 3e-90
> Ahg473156 jgi|Araly1|473156|fgenesh2_kg.1__3110__AT1G29450.1
Length=508
Score = 459 bits (248), Expect = 2e-128
Identities = 366/421 (87%), Gaps = 16/421 (4%)
Strand=Plus/Plus
Query 80 AATGATGAACA-CAAAGAAGCTAATCAAGATGTTCAGGAAATGGCAACAGAGAGCAGCTC 138
||||||||||| |||| ||||||||||||||| || |||||||||||| |||||||| |
Sbjct 93 AATGATGAACACCAAA-AAGCTAATCAAGATGGCCAAGAAATGGCAACAAAGAGCAGCCC 151
Query 139 TCCACAGGAAAAGAATCTCATTCCAAAGACCAAGTA---C--CC-GCTCAACCACTGTAG 192
||||||||||||| |||||||| |||||| |||||| | || |||||||| ||| ||
Sbjct 152 TCCACAGGAAAAGGATCTCATTTCAAAGATCAAGTACTGCTACCAGCTCAACCGCTGCAG 211
Query 193 AGAAGGGATGCTTTGTCGTTTACACGGCGGACAACACACGCTTTGCTTTTCCGATAAGCT 252
||||||| |||||||| ||||||||| | || | | |||||||||||||||| |||| |
Sbjct 212 AGAAGGGTTGCTTTGTGGTTTACACGACAGATAGCGCACGCTTTGCTTTTCCTCTAAGTT 271
Query 253 ACCTAAGCAACTCTGTATTT-CAAGAGATTTTGGAGATATCTGAAGAAGAGTTTGGCCTC 311
|||| ||||||||||| ||| |||||| | ||| |||| |||||||||||||||||||||
Sbjct 272 ACCTGAGCAACTCTGT-TTTCCAAGAGCTCTTGAAGATCTCTGAAGAAGAGTTTGGCCTC 330
Query 312 -CCAACCGG-TGGACCAATCACATTACCATTCGATTCGGtttttttGGAGTATCTCATCA 369
|| | ||| |||||||| ||||| |||||||||||| |||| |||||||||| ||||
Sbjct 331 TCC-A-CGGAAGGACCAATAACATTGCCATTCGATTCGATTTTCATGGAGTATCTTATCA 388
Query 370 AATTGATCAAAAGACGAATGGATGGAGATACAGAAAAGGCTTTGTTAATGTCAATCTCTA 429
|||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 389 AATTGATCGAAAGACGAATGGATGGAGACACAGAAAAGGCTTTATTAATGTCAATCTCTA 448
Query 430 GTGCTAGATGTTCTTTGCAAAAACAAGAACAGAGTACTCAACA-ATTGCTTGTATTTTAG 488
|||||||||||||||| ||| ||| |||||| ||||||||||| || |||||||||||||
Sbjct 449 GTGCTAGATGTTCTTTACAACAACCAGAACATAGTACTCAACAGAT-GCTTGTATTTTAG 507
Query 489 A 489
|
Sbjct 508 A 508
> Ahg921978 jgi|Araly1|921978|scaffold_103259.1
Length=338
Score = 385 bits (208), Expect = 3e-106
Identities = 300/341 (88%), Gaps = 19/341 (6%)
Strand=Plus/Plus
Query 60 TTTTTGCTTTCCCAGAGAATAATGATGAACACAAAGAAGCTAATCAAGATGTTCAGGAAA 119
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 4 TTTTTGCTTTCCTAGAGAATAATGATGAACACAAAGAAGCTAATCAAGATGTTCAGGGAA 63
Query 120 TGGCAACAGAGAGCAGCTCTCCACAGGAAAAGAATCTCATTCCA-AAGACCAAGT---AC 175
||||||||||||||||||||||||||||||||||||||||| || ||| | |||| ||
Sbjct 64 TGGCAACAGAGAGCAGCTCTCCACAGGAAAAGAATCTCATTTCAGAAGTC-AAGTGCTAC 122
Query 176 C--C-GCTCAACCA-CTGTAGAGAAGGGATGCTTTGTCGTTTACACGGCGGACAACACAC 231
| | ||| ||| | |||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 123 CAGCAGCTTAAC-AGCTGTAGAGAAGGGATGCTTTGTAGTTTACACGGCGGATAACACAC 181
Query 232 GCTTTGCTTTTCCGATAAGCTACCTA-AGCAACTCTGTATTTCAAGAGATTTTGGAGATA 290
||||||||||||| ||||| || || ||||||||||| ||||||||| | | | |
Sbjct 182 GCTTTGCTTTTCCTATAAG-TAACTTGAGCAACTCTGTTTTTCAAGAGCTCT---A--T- 234
Query 291 TCTGAAGAAGAGTTTGGCCTCCCAACCGGTGGACCAATCACATTACCATTCGATTCGGtt 350
||||||||||||||||||||||||||||||||||||| ||||| || ||||| || | |
Sbjct 235 -CTGAAGAAGAGTTTGGCCTCCCAACCGGTGGACCAATTACATTGCCGTTCGAATCAGCT 293
Query 351 tttttGGAGTATCTCATCAAATTGATCAAAAGACGAATGGA 391
|| |||||||||||||||||||||||| ||||| |||||||
Sbjct 294 TTCTTGGAGTATCTCATCAAATTGATCGAAAGAAGAATGGA 334
> Ahg473153 jgi|Araly1|473153|fgenesh2_kg.1__3107__AT1G29490.1
Length=491
Score = 366 bits (198), Expect = 9e-101
Identities = 391/479 (82%), Gaps = 34/479 (7%)
Strand=Plus/Plus
Query 80 AATGATGAACACAAAGAAGCTAATCAAGATGTTCAGGAAATGGCAACAGAGAGCAGCTCT 139
||||||||||||||||||||||||||||||| || |||||||||| ||| |||||| |
Sbjct 18 AATGATGAACACAAAGAAGCTAATCAAGATGGCCAAGAAATGGCAAAAGAAAGCAGC-AT 76
Query 140 CCA-CAGGAAAAGAATCTCATTCCAAAGACCAAG---TA-C-C---C-GCTCAACCACTG 189
| |||||||||||||||||| || ||| |||| || | | | ||||| || | |
Sbjct 77 TAAGCAGGAAAAGAATCTCATTTCAGAGATCAAGTACTACCACTAGCAGCTCATCCGCAG 136
Query 190 TAGAGAAGGGATGCTTTGTCGTTTACACGGCGGACAACA-CACGCTTTGCTTTTCCGATA 248
||||||||| || ||||| |||||||||| ||| || | | |||||||| ||||| |||
Sbjct 137 GAGAGAAGGGTTGTTTTGTAGTTTACACGGTGGATAA-AGCCCGCTTTGCGTTTCCAATA 195
Query 249 AGCTACCTAAGCAACTCTG-TATTTCAAGAGATTTTGGAGATATCTGAAGAAGAGTTTGG 307
|| ||||| |||||||||| || |||||||| | ||| ||||||||||||||||||||||
Sbjct 196 AGTTACCTGAGCAACTCTGTTA-TTCAAGAGCTCTTGAAGATATCTGAAGAAGAGTTTGG 254
Query 308 CCTCCCAACCGGTGGACCAATCACATTACCATTCGATTCGGtttttttGGAGTATCTCAT 367
|||||| || | ||||| ||||| | |||||||||||| |||| ||||||||||||||
Sbjct 255 CCTCCCCACAGAAGGACCGATCACGCTGCCATTCGATTCGATTTTCTTGGAGTATCTCAT 314
Query 368 CAAATTGATCAAAAGACGAATGGATGGAGATACAGAAAAGG-CTTTGTTAATGTCAATCT 426
||||||||||||||||||||||||||||||||||||||| | | || | || | ||||||
Sbjct 315 CAAATTGATCAAAAGACGAATGGATGGAGATACAGAAAACGTCCTTAT-AACGGCAATCT 373
Query 427 CTAGTGCTAGATGTTCTTTGCAA------A---AACA--AG-AACAGAGTA---CTCAAC 471
|||||||||||||||||| ||| | ||| || |||| |||| |||| |
Sbjct 374 CTAGTGCTAGATGTTCTTCACAATGCTCTATGCAACTTGAGGAACATAGTAGTGCTCAGC 433
Query 472 AATTGCTTGTATTTTAGAGAATTAGTGTGTAGCAGTTT-TTGTGTTTGTAAAGATTCTA 529
|||||||||||||||||||||||||| |||| | | || |||||||||||||||||
Sbjct 434 GTTTGCTTGTATTTTAGAGAATTAGTGTCAAGCAATATCTT-TGTTTGTAAAGATTCTA 491
> Ahg473154 jgi|Araly1|473154|fgenesh2_kg.1__3108__AT5G27780.1
Length=438
Score = 361 bits (195), Expect = 4e-99
Identities = 322/381 (85%), Gaps = 18/381 (5%)
Strand=Plus/Plus
Query 81 ATGATGAACACAAAGAAGCTAATCAAGATGTTCAGGAAATGGCAACAGAGAGCAGCTCTC 140
|||||||||||||||||||| | |||||| || |||||||||||| |||||||| ||
Sbjct 4 ATGATGAACACAAAGAAGCTCTTGAAGATGGCCAAGAAATGGCAACAAAGAGCAGC-CTT 62
Query 141 CA-CAGGAAAAGAATCTCATTCCAAAGACCAAGTAC--C---C-GCTCAACCACTGTAGA 193
|| |||||||||||||||||| || || ||||| | | | ||||||||||||||||
Sbjct 63 CAGCAGGAAAAGAATCTCATTTCAGAGTTCAAGTGCTTCTAGCAGCTCAACCACTGTAGA 122
Query 194 GAAGGGATGCTTT-GTCGTTTACACGGCGGACAACA-CACGCTTTGCTTTTCCGATAAGC 251
|||||| || ||| || ||||||||||| || || | | |||||||||||||| ||||
Sbjct 123 GAAGGGTTG-TTTCGTGGTTTACACGGCAGATAAAATC-CGCTTTGCTTTTCCTTTAAGT 180
Query 252 TACCTAAGCAACTCTGTATT-T-CAAGAGATTTTGGAGATATCTGAAGAAGAGTTTGGCC 309
||||| |||||| | |||| | |||||| | ||| | |||||||||||||||||||| |
Sbjct 181 TACCTGAGCAAC-C-CTATTGTCCAAGAGCTCTTGAAAATATCTGAAGAAGAGTTTGGTC 238
Query 310 TCCCAACCGGTGGACCAATCACATT-ACCATTCGATTCGGtttttttGGAGTATCTCATC 368
|||| || | |||||||||||||| | |||||||||| | |||||| | ||||||||||
Sbjct 239 TCCCGACAGAAGGACCAATCACATTGA-CATTCGATTCCGCTTTTTTAGCGTATCTCATC 297
Query 369 AAATTGATCAAAAGACGAATGGATGGAGATACAGAAAAGGCTTTGTTAATGTCAATCTCT 428
| ||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 298 AGATTGATCGAAAGACGAATGGATGGAGATACAGAAAAGGCTCTGTTATTGTCAATCTCT 357
Query 429 AGTGCTAGATGTTCTTTGCAA 449
||||||||||||||||| |||
Sbjct 358 AGTGCTAGATGTTCTTTACAA 378
> Ahg912754 jgi|Araly1|912754|Al_scaffold_0001_3008
Length=573
Score = 331 bits (179), Expect = 3e-90
Identities = 304/359 (85%), Gaps = 30/359 (8%)
Strand=Plus/Plus
Query 105 AAGATGTTCAGGAAATGGCAACAGAGAGCAGCTCTCCA-CA-GGAAAAGAATCTCA-TTC 161
|||||| || |||||||||||| |||||||| || || || |||||||||||||| ||
Sbjct 177 AAGATGGCCAAGAAATGGCAACAAAGAGCAGC-CTTCAGCATGGAAAAGAATCTCACTT- 234
Query 162 CAAAGAC--CAA--G-TAC--C---C-GCTCAACCACTGTAGAGAAGGGATGCTTT-GTC 209
| |||| ||| | ||| | | |||||||||||||||||||| | || ||| ||
Sbjct 235 C--AGACGTCAAGTGCTACTACTAGCAGCTCAACCACTGTAGAGAAGCGTTG-TTTCGTG 291
Query 210 GTTTACACGGCGGACAACA-CACGCTTTGCTTTT-CCGATAAGCTACCTAAGCAACTCTG 267
||||||||||| || || | |||| |||| |||| || | ||||||||| ||||||||||
Sbjct 292 GTTTACACGGCAGATAA-AGCACGTTTTG-TTTTCCCAAAAAGCTACCTGAGCAACTCTG 349
Query 268 TATTT-CAAGAGATTTTGGAGATATCTGAAGAAGAGTTTGGCCTC-CCAACCGGTGGACC 325
| ||| |||||| | ||| |||||||||||||||||||||||||| || | || |||| |
Sbjct 350 T-TTTCCAAGAGGTCTTGAAGATATCTGAAGAAGAGTTTGGCCTCTCC-AGCGATGGAGC 407
Query 326 AATCACATT-ACCATTCGATTCGGtttttttGGAGTATCTCATCAAATTGATCAAAAGAC 384
||||||||| | |||||||||||||||| |||||||||||||||||||||||| || |||
Sbjct 408 AATCACATTGA-CATTCGATTCGGTTTTCTTGGAGTATCTCATCAAATTGATCCAACGAC 466
Query 385 GAATGGATGGAGATACAGAAAAGGCTTTGTTAATGTCAATCTCTAGTGCTAGATGTTCT 443
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 467 GAATGGAGGGAGATACAGAAAAGGCTCTGTTAATGTCAATCTCTAGTGCTAGATGTTCT 525
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24017437710
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5