BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29510.1
Length=616
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473154 jgi|Araly1|473154|fgenesh2_kg.1__3108__AT5G27780.1 499 8e-141
Ahg912754 jgi|Araly1|912754|Al_scaffold_0001_3008 398 3e-110
Ahg473156 jgi|Araly1|473156|fgenesh2_kg.1__3110__AT1G29450.1 390 5e-108
Ahg473153 jgi|Araly1|473153|fgenesh2_kg.1__3107__AT1G29490.1 385 2e-106
Ahg921978 jgi|Araly1|921978|scaffold_103259.1 263 1e-69
> Ahg473154 jgi|Araly1|473154|fgenesh2_kg.1__3108__AT5G27780.1
Length=438
Score = 499 bits (270), Expect = 8e-141
Identities = 391/446 (88%), Gaps = 22/446 (5%)
Strand=Plus/Plus
Query 110 ATGATGATAAACGCAAAGAAGCT-TATGAAGATGGCTAAGAAATGGCAACAAAGAGCAGC 168
|||||||| ||| |||||||||| | |||||||||| ||||||||||||||||||||||
Sbjct 1 ATGATGATGAACACAAAGAAGCTCT-TGAAGATGGCCAAGAAATGGCAACAAAGAGCAG- 58
Query 169 CCTCCA-CAGGAAAAGAATCTCATTTCAGAGATCAAATGTCTTTACTAGCAGCTCTTCTA 227
||| || |||||||||||||||||||||||| |||| || | || |||||||||| | |
Sbjct 59 CCTTCAGCAGGAAAAGAATCTCATTTCAGAGTTCAAGTG-C-TT-CTAGCAGCTCAACCA 115
Query 228 CTGTAGAAAAGGGTTGTTTCGTGGTCTACACGGCGGATAAAATCCGCTTTGCTTTTCCAA 287
||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 116 CTGTAGAGAAGGGTTGTTTCGTGGTTTACACGGCAGATAAAATCCGCTTTGCTTTTCCTT 175
Query 288 TAAGTTATCTGAGCAACTCTATTGTCCAAGAGCTCTTGAAAATATCTGAAGAAGAGTTCG 347
||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 176 TAAGTTACCTGAGCAACCCTATTGTCCAAGAGCTCTTGAAAATATCTGAAGAAGAGTTTG 235
Query 348 GTCTCCCAACGGAAGGACCAATCACATTGCCGTTCGATTCGG-TTTTCTTGGAGTATCTC 406
||||||| || |||||||||||||||||| | |||||||| | |||| || | |||||||
Sbjct 236 GTCTCCCGACAGAAGGACCAATCACATTGACATTCGATTCCGCTTTT-TTAGCGTATCTC 294
Query 407 ATCAAACTGATCCAAAGACGAATGGATGGAGATACAGAAAAGGCTCTGTTGAT-GTCAAT 465
|||| | ||||| ||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 295 ATCAGATTGATCGAAAGACGAATGGATGGAGATACAGAAAAGGCTCTGTT-ATTGTCAAT 353
Query 466 CTCTAGTGCTA-AGTGTTCTTTACAATGTTCTTTGCTAC-AGCAAGA-A-CA--G-AGTA 518
||||||||||| | |||||||||||||||||| ||| || || || | | || | ||||
Sbjct 354 CTCTAGTGCTAGA-TGTTCTTTACAATGTTCTCTGCAACGAGAAAAACAACAATGTAGTA 412
Query 519 CT-C--AACAATTGCTTGTATTATAG 541
|| | |||| ||||||||||| |||
Sbjct 413 CTACTCAACAGTTGCTTGTATTTTAG 438
> Ahg912754 jgi|Araly1|912754|Al_scaffold_0001_3008
Length=573
Score = 398 bits (215), Expect = 3e-110
Identities = 331/385 (86%), Gaps = 15/385 (4%)
Strand=Plus/Plus
Query 137 AAGATGGCTAAGAAATGGCAACAAAGAGCAGCCCTCCA-CA-GGAAAAGAATCTCATTTC 194
|||||||| |||||||||||||||||||||| ||| || || |||||||||||||| |||
Sbjct 177 AAGATGGCCAAGAAATGGCAACAAAGAGCAG-CCTTCAGCATGGAAAAGAATCTCACTTC 235
Query 195 AGA-GATCAAATGTCT-TTACTAGCAGCTCTTCTACTGTAGAAAAGGGTTGTTTCGTGGT 252
||| | |||| || || |||||||||||| | |||||||| ||| |||||||||||||
Sbjct 236 AGACG-TCAAGTG-CTACTACTAGCAGCTCAACCACTGTAGAGAAGCGTTGTTTCGTGGT 293
Query 253 CTACACGGCGGATAAAATC-CGCTTTGCTTTT-CCAATAAGTTATCTGAGCAACTCTATT 310
|||||||| ||| ||| | || |||| |||| |||| ||| || |||||||||||| ||
Sbjct 294 TTACACGGCAGAT-AAAGCACGTTTTG-TTTTCCCAAAAAGCTACCTGAGCAACTCTGTT 351
Query 311 GTCCAAGAGCTCTTGAAAATATCTGAAGAAGAGTTCGGTCTC-CCAACGGAAGGACCAAT 369
|||||||| ||||||| ||||||||||||||||| || ||| ||| | || ||| ||||
Sbjct 352 TTCCAAGAGGTCTTGAAGATATCTGAAGAAGAGTTTGGCCTCTCCAGC-GATGGAGCAAT 410
Query 370 CACATTGCCGTTCGATTCGGTTTTCTTGGAGTATCTCATCAAACTGATCCAAAGACGAAT 429
||||||| | ||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 411 CACATTGACATTCGATTCGGTTTTCTTGGAGTATCTCATCAAATTGATCCAACGACGAAT 470
Query 430 GGATGGAGATACAGAAAAGGCTCTGTTGATGTCAATCTCTAGTGCTA-AGTGTTCTTTAC 488
||| ||||||||||||||||||||||| ||||||||||||||||||| | |||||| ||
Sbjct 471 GGAGGGAGATACAGAAAAGGCTCTGTTAATGTCAATCTCTAGTGCTAGA-TGTTCTAAAC 529
Query 489 AATGTTCTTTGCTACAGCAAGAACA 513
|| |||||| | ||| ||||||||
Sbjct 530 CATATTCTTTTCAACAACAAGAACA 554
> Ahg473156 jgi|Araly1|473156|fgenesh2_kg.1__3110__AT1G29450.1
Length=508
Score = 390 bits (211), Expect = 5e-108
Identities = 330/386 (85%), Gaps = 14/386 (4%)
Strand=Plus/Plus
Query 109 AATGATGATAAACGCAAAGAAGCTTATGAAGATGGCTAAGAAATGGCAACAAAGAGCAGC 168
|||||||| | || |||| ||||| || |||||||| |||||||||||||||||||||||
Sbjct 93 AATGATGA-ACAC-CAAA-AAGCTAATCAAGATGGCCAAGAAATGGCAACAAAGAGCAGC 149
Query 169 CCTCCACAGGAAAAGAATCTCATTTCAGAGATCAAATGTCTTTACTAGCAGCTCTTCTAC 228
||||||||||||||| ||||||||||| ||||||| | || ||| |||||| | |
Sbjct 150 CCTCCACAGGAAAAGGATCTCATTTCAAAGATCAAGTA-CTG--CTACCAGCTCAACCGC 206
Query 229 TGTAGAAAAGGGTTG-TTTCGTGGTCTACACGGCGGATAAAATC-CGCTTTGCTTTTCCA 286
|| ||| |||||||| ||| ||||| |||||| | |||| | ||||||||||||||
Sbjct 207 TGCAGAGAAGGGTTGCTTT-GTGGTTTACACGACAGATAGCG-CACGCTTTGCTTTTCCT 264
Query 287 ATAAGTTATCTGAGCAACTCTATTGTCCAAGAGCTCTTGAAAATATCTGAAGAAGAGTTC 346
||||||| |||||||||||| || |||||||||||||||| || ||||||||||||||
Sbjct 265 CTAAGTTACCTGAGCAACTCTGTTTTCCAAGAGCTCTTGAAGATCTCTGAAGAAGAGTTT 324
Query 347 GGTCTC-CCAACGGAAGGACCAATCACATTGCCGTTCGATTCGGTTTTCTTGGAGTATCT 405
|| ||| ||| ||||||||||||| |||||||| ||||||||| ||||| ||||||||||
Sbjct 325 GGCCTCTCCA-CGGAAGGACCAATAACATTGCCATTCGATTCGATTTTCATGGAGTATCT 383
Query 406 CATCAAACTGATCCAAAGACGAATGGATGGAGATACAGAAAAGGCTCTGTTGATGTCAAT 465
|||||| ||||| ||||||||||||||||||| |||||||||||| | || ||||||||
Sbjct 384 TATCAAATTGATCGAAAGACGAATGGATGGAGACACAGAAAAGGCTTTATTAATGTCAAT 443
Query 466 CTCTAGTGCTA-AGTGTTCTTTACAA 490
||||||||||| | ||||||||||||
Sbjct 444 CTCTAGTGCTAGA-TGTTCTTTACAA 468
> Ahg473153 jgi|Araly1|473153|fgenesh2_kg.1__3107__AT1G29490.1
Length=491
Score = 385 bits (208), Expect = 2e-106
Identities = 366/440 (83%), Gaps = 19/440 (4%)
Strand=Plus/Plus
Query 113 ATGATAAACGCAAAGAAGCTTATGAAGATGGCTAAGAAATGGCAACAA-AGAGCAGCCCT 171
||||| ||| |||||||||| || |||||||| |||||||||||| || | ||||| | |
Sbjct 19 ATGATGAACACAAAGAAGCTAATCAAGATGGCCAAGAAATGGCAA-AAGAAAGCAG-CAT 76
Query 172 CCA-CAGGAAAAGAATCTCATTTCAGAGATCAAATGT-CT-TTACTAGCAGCTCTTCTAC 228
| ||||||||||||||||||||||||||| || || || ||||||||||| || |
Sbjct 77 TAAGCAGGAAAAGAATCTCATTTCAGAGATC-AA-GTACTACCACTAGCAGCTCATCCGC 134
Query 229 TGTAGAAAAGGGTTGTTTCGTGGTCTACACGGCGGATAAAATCCGCTTTGCTTTTCCAAT 288
| ||| ||||||||||| || || ||||||| ||||||| ||||||||| ||||||||
Sbjct 135 AGGAGAGAAGGGTTGTTTTGTAGTTTACACGGTGGATAAAGCCCGCTTTGCGTTTCCAAT 194
Query 289 AAGTTATCTGAGCAACTCTATTGTCCAAGAGCTCTTGAAAATATCTGAAGAAGAGTTCGG 348
|||||| |||||||||||| || | |||||||||||||| ||||||||||||||||| ||
Sbjct 195 AAGTTACCTGAGCAACTCTGTTATTCAAGAGCTCTTGAAGATATCTGAAGAAGAGTTTGG 254
Query 349 TCTCCCAACGGAAGGACCAATCACATTGCCGTTCGATTCGGTTTTCTTGGAGTATCTCAT 408
||||| || |||||||| ||||| |||| ||||||||| |||||||||||||||||||
Sbjct 255 CCTCCCCACAGAAGGACCGATCACGCTGCCATTCGATTCGATTTTCTTGGAGTATCTCAT 314
Query 409 CAAACTGATCCAAAGACGAATGGATGGAGATACAGAAAAGGCTC-TGT-TGATGTCAATC 466
|||| ||||| |||||||||||||||||||||||||||| | || | | | | | |||||
Sbjct 315 CAAATTGATCAAAAGACGAATGGATGGAGATACAGAAAACG-TCCT-TATAACGGCAATC 372
Query 467 TCTAGTGCTA-AGTGTTCTTTACAATGTTCTTTGCTACA-GCAAGAACAGAGTA---CTC 521
|||||||||| | ||||||| |||||| ||| ||| || | | ||||| |||| |||
Sbjct 373 TCTAGTGCTAGA-TGTTCTTCACAATGCTCTATGCAACTTG-AGGAACATAGTAGTGCTC 430
Query 522 AACAATTGCTTGTATTATAG 541
| | ||||||||||| |||
Sbjct 431 AGCGTTTGCTTGTATTTTAG 450
> Ahg921978 jgi|Araly1|921978|scaffold_103259.1
Length=338
Score = 263 bits (142), Expect = 1e-69
Identities = 278/339 (82%), Gaps = 27/339 (8%)
Strand=Plus/Plus
Query 103 CCT-GAAAATGATGATAAACGCAAAGAAGCTTATGAAGATGGCT-AAGAAATGGCAACAA 160
||| || ||| ||||| ||| |||||||||| || ||||| | | | | ||||||||||
Sbjct 14 CCTAGAGAATAATGATGAACACAAAGAAGCTAATCAAGAT-GTTCAGGGAATGGCAACAG 72
Query 161 AGAGCAGCCCTCCACAGGAAAAGAATCTCATTTCAGA-GATCAAATGTCTTTACTAGCAG 219
|||||||| |||||||||||||||||||||||||||| | |||| || || || |||||
Sbjct 73 AGAGCAGCTCTCCACAGGAAAAGAATCTCATTTCAGAAG-TCAAGTG-CT--ACCAGCAG 128
Query 220 CTCTT-CTA-CTGTAGAAAAGGGTTG-TTTCGTGGTCTACACGGCGGATAAAATC-CGCT 275
|| | | | ||||||| ||||| || ||| || || |||||||||||||| | | ||||
Sbjct 129 CT-TAAC-AGCTGTAGAGAAGGGATGCTTT-GTAGTTTACACGGCGGATAACA-CACGCT 184
Query 276 TTGCTTTTCCAATAAGTTATCT-GAGCAACTCTATTGTCCAAGAGCTCTTGAAAATATCT 334
|||||||||| |||||| | || |||||||||| || | |||||||||| | | ||
Sbjct 185 TTGCTTTTCCTATAAGTAA-CTTGAGCAACTCTGTTTTTCAAGAGCTCT--A---T--CT 236
Query 335 GAAGAAGAGTTCGGTCTCCCAAC-GGAAGGACCAATCACATTGCCGTTCGATTCGGTTTT 393
||||||||||| || |||||||| || |||||||| |||||||||||||| || | |||
Sbjct 237 GAAGAAGAGTTTGGCCTCCCAACCGGT-GGACCAATTACATTGCCGTTCGAATCAGCTTT 295
Query 394 CTTGGAGTATCTCATCAAACTGATCCAAAGACGAATGGA 432
||||||||||||||||||| ||||| ||||| |||||||
Sbjct 296 CTTGGAGTATCTCATCAAATTGATCGAAAGAAGAATGGA 334
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22530643947
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5