BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G29520.1 Length=775 Score E Sequences producing significant alignments: (Bits) Value Ahg473160 jgi|Araly1|473160|fgenesh2_kg.1__3114__AT1G29520.1 1138 0.0 > Ahg473160 jgi|Araly1|473160|fgenesh2_kg.1__3114__AT1G29520.1 Length=742 Score = 1138 bits (616), Expect = 0.0 Identities = 720/766 (94%), Gaps = 24/766 (3%) Strand=Plus/Plus Query 4 CATAAGAACAAActtcatcttcttcattcttctttcttctcttTTTGTCCCGCTTTCGTA 63 |||||||||||||||||| ||| ||||||||||||||||||| || ||||||||||||| Sbjct 1 CATAAGAACAAACTTCATTTTCCTCATTCTTCTTTCTTCTCTCTTCCTCCCGCTTTCGTA 60 Query 64 GTTTTTCAAAAGGCGAAATGGCGGGTGAGCAAATCAAACCTGTTGCCTCTGGACTTCTAG 123 |||||||||||||||||||||||||||||||||| |||||||||||||||||||| || | Sbjct 61 GTTTTTCAAAAGGCGAAATGGCGGGTGAGCAAATGAAACCTGTTGCCTCTGGACTACTTG 120 Query 124 TTTTGAACTTCTGCATGTATGTGATCGTTCTAGGCATTGGAGGATGGGCCATGAACCGAG 183 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TTTTGAATTTCTGCATGTATGTGATCGTTCTAGGCATTGGAGGATGGGCCATGAACCGAG 180 Query 184 CCATCGACCATGGATTCGAAGTCGGCCCTAATTTAGAGCTTCCAGCACATTTCTCCCCAA 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CCATCGACCATGGATTCGAAGTCGGCCCTAATTTAGAGCTTCCAGCACATTTCTCCCCAA 240 Query 244 TTTATTTCCCGATGGGAAACGCAGCCACAGGATTCTTTGTGATATTCGCGTTGCTAGCGG 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TTTATTTCCCGATGGGAAACGCAGCCACAGGATTCTTTGTGATATTCGCGTTGCTAGCGG 300 Query 304 GAGTAGTTGGAGCAGCTTCCACAATCTCAGGCCTTAGCCACATTCGTTCGTGGACCGTGG 363 |||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GAGTGGTTGGTGCGGCTTCCACAATCTCAGGCCTTAGCCACATTCGTTCGTGGACCGTGG 360 Query 364 GAAGCTTACCAGCAGCAGCCACAGCTGCAACCATTGCCTGGACCCTCACAGTCCTTGCCA 423 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 361 GAAGCTTACCAGCTGCAGCCACAGCTGCAACCATTGCCTGGACCCTCACAGTCCTCGCCA 420 Query 424 TGGGTTTCGCTTGGAAAGAAATCGAGCTACAAGGGAGAAATGCAAAACTGAGAACCATGG 483 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 421 TGGGTTTCGCTTGGAAAGAAATCGAGCTACAAGGGCGAAATGCAAAACTGAGAACCATGG 480 Query 484 AGGCGTTCTTGATCATACTCTCAGTCACCCAGCTTATTTACATCGCAGCAGTTCATGGCG 543 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 481 AGGCGTTCTTGATCATACTCTCAGTCACCCAGCTTATTTACATCGCAGCAGTTCACGGCG 540 Query 544 TGAGGAGACCTTAAGGAATCATTCATGGGCGTCGGATTTCTTTTCTTCCTATTGTGGCAA 603 ||||||||||||||||||||||| | || || | ||| | | ||||||| Sbjct 541 TGAGGAGACCTTAAGGAATCATTT-T-----TC---TT-C----CTT--T-T-GTGGCAA 582 Query 604 TCATCCGAAACTCGGGATTGTGTGTGTGAGCGTTTGTATTTGTGTGAGTGTGCTTTATTT 663 ||||| |||||||||||||||||||||||||||||||||||||||| || | ||||||| Sbjct 583 TCATCGGAAACTCGGGATTGTGTGTGTGAGCGTTTGTATTTGTGTGTTTG-G-TTTATTT 640 Query 664 TCTTCATAGGAAGCTTAAGATAAATTCATGCATTCTTTATGTACAAAAGGATTAGATCTT 723 || |||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 641 TC---ATAGGAAGCTTAAGATAAATTCATGCATTCTTTATGTACAAAAGGATTGGATCTT 697 Query 724 GTTTTGTGTGTTGTCACTTTGTGTTCATGGAATAAAATCGAACTTT 769 ||||||||||| ||||||||||||||||||||||||||| |||||| Sbjct 698 GTTTTGTGTGT-GTCACTTTGTGTTCATGGAATAAAATCAAACTTT 742 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28592187750 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5