BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29520.1
Length=775
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473160 jgi|Araly1|473160|fgenesh2_kg.1__3114__AT1G29520.1 1138 0.0
> Ahg473160 jgi|Araly1|473160|fgenesh2_kg.1__3114__AT1G29520.1
Length=742
Score = 1138 bits (616), Expect = 0.0
Identities = 720/766 (94%), Gaps = 24/766 (3%)
Strand=Plus/Plus
Query 4 CATAAGAACAAActtcatcttcttcattcttctttcttctcttTTTGTCCCGCTTTCGTA 63
|||||||||||||||||| ||| ||||||||||||||||||| || |||||||||||||
Sbjct 1 CATAAGAACAAACTTCATTTTCCTCATTCTTCTTTCTTCTCTCTTCCTCCCGCTTTCGTA 60
Query 64 GTTTTTCAAAAGGCGAAATGGCGGGTGAGCAAATCAAACCTGTTGCCTCTGGACTTCTAG 123
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
Sbjct 61 GTTTTTCAAAAGGCGAAATGGCGGGTGAGCAAATGAAACCTGTTGCCTCTGGACTACTTG 120
Query 124 TTTTGAACTTCTGCATGTATGTGATCGTTCTAGGCATTGGAGGATGGGCCATGAACCGAG 183
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTTTGAATTTCTGCATGTATGTGATCGTTCTAGGCATTGGAGGATGGGCCATGAACCGAG 180
Query 184 CCATCGACCATGGATTCGAAGTCGGCCCTAATTTAGAGCTTCCAGCACATTTCTCCCCAA 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCATCGACCATGGATTCGAAGTCGGCCCTAATTTAGAGCTTCCAGCACATTTCTCCCCAA 240
Query 244 TTTATTTCCCGATGGGAAACGCAGCCACAGGATTCTTTGTGATATTCGCGTTGCTAGCGG 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTTATTTCCCGATGGGAAACGCAGCCACAGGATTCTTTGTGATATTCGCGTTGCTAGCGG 300
Query 304 GAGTAGTTGGAGCAGCTTCCACAATCTCAGGCCTTAGCCACATTCGTTCGTGGACCGTGG 363
|||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAGTGGTTGGTGCGGCTTCCACAATCTCAGGCCTTAGCCACATTCGTTCGTGGACCGTGG 360
Query 364 GAAGCTTACCAGCAGCAGCCACAGCTGCAACCATTGCCTGGACCCTCACAGTCCTTGCCA 423
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 361 GAAGCTTACCAGCTGCAGCCACAGCTGCAACCATTGCCTGGACCCTCACAGTCCTCGCCA 420
Query 424 TGGGTTTCGCTTGGAAAGAAATCGAGCTACAAGGGAGAAATGCAAAACTGAGAACCATGG 483
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 421 TGGGTTTCGCTTGGAAAGAAATCGAGCTACAAGGGCGAAATGCAAAACTGAGAACCATGG 480
Query 484 AGGCGTTCTTGATCATACTCTCAGTCACCCAGCTTATTTACATCGCAGCAGTTCATGGCG 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 481 AGGCGTTCTTGATCATACTCTCAGTCACCCAGCTTATTTACATCGCAGCAGTTCACGGCG 540
Query 544 TGAGGAGACCTTAAGGAATCATTCATGGGCGTCGGATTTCTTTTCTTCCTATTGTGGCAA 603
||||||||||||||||||||||| | || || | ||| | | |||||||
Sbjct 541 TGAGGAGACCTTAAGGAATCATTT-T-----TC---TT-C----CTT--T-T-GTGGCAA 582
Query 604 TCATCCGAAACTCGGGATTGTGTGTGTGAGCGTTTGTATTTGTGTGAGTGTGCTTTATTT 663
||||| |||||||||||||||||||||||||||||||||||||||| || | |||||||
Sbjct 583 TCATCGGAAACTCGGGATTGTGTGTGTGAGCGTTTGTATTTGTGTGTTTG-G-TTTATTT 640
Query 664 TCTTCATAGGAAGCTTAAGATAAATTCATGCATTCTTTATGTACAAAAGGATTAGATCTT 723
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 641 TC---ATAGGAAGCTTAAGATAAATTCATGCATTCTTTATGTACAAAAGGATTGGATCTT 697
Query 724 GTTTTGTGTGTTGTCACTTTGTGTTCATGGAATAAAATCGAACTTT 769
||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 698 GTTTTGTGTGT-GTCACTTTGTGTTCATGGAATAAAATCAAACTTT 742
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28592187750
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5