BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29530.1
Length=1127
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473161 jgi|Araly1|473161|fgenesh2_kg.1__3115__AT1G29530.1 1411 0.0
> Ahg473161 jgi|Araly1|473161|fgenesh2_kg.1__3115__AT1G29530.1
Length=1093
Score = 1411 bits (764), Expect = 0.0
Identities = 954/1045 (91%), Gaps = 15/1045 (1%)
Strand=Plus/Plus
Query 12 AGACAAAATTTGAAGTTTGAAGTGAAGAAACAATTTCATTTTGCGGCGACGAATTCGAAT 71
||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||| |
Sbjct 1 AGACAAATTTTGAAGTTTGAAGTGAAGAAACAGTTTCATTTTGGGGCGACGAATTCGATT 60
Query 72 TTTCCGATCGATCATGCCGTCCGGTGCGAAGAAAAGAAAGGCGTTGAAGAAGAAGAAGCA 131
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 61 TTTCCGATCGATCATGCCGTCCGGTGCGAAGAAGAGAAAGGCGTTGAAGAAGAAGAAGCA 120
Query 132 ACAGGAAGCGATTGGAACAAGTATCAACGGAAATGATGAACATGGAAGCCAAGATGGGAG 191
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 121 ACAGGAAGCGATTGGAACAAGTACCAACAGAAATGATGAACATGGAAGCCAAGATGGGAG 180
Query 192 GGGAAGTGATAGCAGTTTGAGTTCTCCTGGTTCTCAAGGAAATCAAGAATTTGGGACTAA 251
|||||||||||| |||||||| || |||||||||||||||||| ||| |||||||||||
Sbjct 181 GGGAAGTGATAGTAGTTTGAGCTCCCCTGGTTCTCAAGGAAATGAAGTTTTTGGGACTAA 240
Query 252 AGATTCATCTGCT-CTTCTATCTTCTGCTGTGGTGAAAGGTGCT-TCTAAAGAGATATCT 309
||||||||||||| || ||||| |||| ||||| ||| |||||| | |||||||||||||
Sbjct 241 AGATTCATCTGCTGCT-CTATCCTCTGGTGTGGCGAAGGGTGCTGT-TAAAGAGATATCT 298
Query 310 AGAGATGCAGGTGTTACTCAGGGACTAGGACCCAAAACTGGCAATGCTATTGTGGAAAAA 369
||||||||||||||||||||||||||||||| |||| ||||||||||||||||| || |
Sbjct 299 GGAGATGCAGGTGTTACTCAGGGACTAGGACCGAAAAGTGGCAATGCTATTGTGGGAAGA 358
Query 370 TCAACTAACTCCTCTTCTGATAACCGTACTCGCCCCGCCAAAAATGTAGCTTGTGGTAAT 429
||||| || ||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 359 TCAACCAATTCCTCTTCTGAAAACCGTACTCACCCCGCCAAAAATGTAGCTTGTGGTAAT 418
Query 430 TCAGTTACAGAAATCACTCCAGTTGTTGATTCTGTTAAACCTGTGGTTTCTATCTCCAAA 489
|||||||| ||||||||||| || |||||||||| ||||||||||||||| ||||||||
Sbjct 419 TCAGTTACGGAAATCACTCCCGTCATTGATTCTGTCAAACCTGTGGTTTCTCTCTCCAAA 478
Query 490 ACAGTGACTTCTGAAAAGAGTGGGCTTGTTGAGACCTCAACACACTCAAATTTGGTCAAA 549
|||||| ||||||||||||| || |||||||||||||||||||||||||||||| | |
Sbjct 479 GCAGTGATTTCTGAAAAGAGTAAGCATGTTGAGACCTCAACACACTCAAATTTGGTGACA 538
Query 550 AAGAAGTCTGAGAAAGATGAAGAGTATCATCCGTCTCCGGTATTGGAAAACAATAATAGT 609
|| | |||||||||| |||||||||||||||| ||||||| | |||||||||||||||||
Sbjct 539 AACACGTCTGAGAAAAATGAAGAGTATCATCCATCTCCGGGACTGGAAAACAATAATAGT 598
Query 610 AAGGTGGTTA-TGCTTCCAAGATCTGCTCCTGAAACAAGCAAAAAAGTAGAGAGCGTAAG 668
|||||||||| | ||||| ||||||||| ||||||||||||||||||||||||| |||||
Sbjct 599 AAGGTGGTTACT-CTTCCGAGATCTGCTGCTGAAACAAGCAAAAAAGTAGAGAGTGTAAG 657
Query 669 AAAATCTGAAGTTCCAGTATCCCCTGAGGAAAAGC---CTCTTTTGCTACCTGGTCCACC 725
|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 658 AAAATCTGAAGTTCCAGTATCCCCTGAGGAAAAGGTAGCTCTTTTGCTGCCTGGTCCACC 717
Query 726 AGTCGTCCGAAGGACTTCATGGCTAAGCTGCTGCGGTTTGTTTGATGCTATGACTGGATC 785
||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 718 AGTTGTCCGAAGGACTTCATTTCTAAGCTGCTGCGGTTTGTTTGATGCTATGACAGGATC 777
Query 786 TGATAGATAAACACAGATGAGCTG-GAGCTAG-ATAAAGGTGGATGCGCTTGACAGTCAA 843
|||||||||||||||| | || | |||| || | ||||||||||||||||||| |||
Sbjct 778 TGATAGATAAACACAGGTTAG-TAAGAGC-AGGAGCTAGGTGGATGCGCTTGACAGCCAA 835
Query 844 AACTCAAAGACAACCGAAAAT-TAGGAGTCATGGTCTGTATACTCTTCTCTGTACATTAT 902
| || ||||||||||||||| ||||| |||||||| ||| |||||||||||||||||||
Sbjct 836 AGCTTAAAGACAACCGAAAAAATAGGATTCATGGTCCGTACACTCTTCTCTGTACATTAT 895
Query 903 ATCTTCGATAGATAATAATGTGGGCGGCTTTTAGCAACGTACGAGCAAGACCAAATATGC 962
|||| |||||||||||||||||||||||||||||||| |||||| |||||||||||| |
Sbjct 896 GTCTTTGATAGATAATAATGTGGGCGGCTTTTAGCAACATACGAGAAAGACCAAATATCC 955
Query 963 AAAACAGGGTAAACTTTCTTTTTATTCTTT-GAAATACAATCTTCTTTTGTTCATCAAAT 1021
||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||
Sbjct 956 TAAACAGGGTAAACTTTCTTTTTATTTTTTTGAAATACAATCTTCTTTTGTTCATTAAAT 1015
Query 1022 GGATTTTAGAACATGAGATTATTCT 1046
|||||||||||||||||||| ||||
Sbjct 1016 GGATTTTAGAACATGAGATTTTTCT 1040
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42011454534
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5