BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G29540.1

Length=735
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg912760 jgi|Araly1|912760|Al_scaffold_0001_3014                    579    1e-164


> Ahg912760 jgi|Araly1|912760|Al_scaffold_0001_3014
Length=489

 Score =  579 bits (313),  Expect = 1e-164
 Identities = 358/380 (94%), Gaps = 2/380 (1%)
 Strand=Plus/Plus

Query  98   TAATCAGAAGATTATGCGGCGTTGTAAGAACCTCCTGATCAGAATCACCAGGAGCTGTCC  157
            |||||||| |||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct  111  TAATCAGACGATTATGCGGCGTTGTAAAAATCTCCTGATAAGAATCACCAGGAGCTGTCC  170

Query  158  CAGAC-ACCATTACCGGCATTTGAAACTTCGGAAAGCTTCTTCTtcatcatcatcatcat  216
            ||||| | |||||||||||||||||||||| |||||| |||||||| || ||||||||||
Sbjct  171  CAGACGA-CATTACCGGCATTTGAAACTTCAGAAAGCGTCTTCTTCCTCTTCATCATCAT  229

Query  217  catcTGGGAAGCAAGGGACCAAAGTGTTGGCTTCATTCTTCCTCTTCTTCCAAAAGAAGA  276
            |||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||
Sbjct  230  CATCTGGGAAGCAAGGCACCAAAGTGTTGGCTTCGTTCTTCCTCTCCTTCCAAAAGAAGA  289

Query  277  AACAGAACAAGGAGAAGATGAAGCGGCTTAACGAACTCAGGAGTTTCTCGGGTGCCGTCG  336
            | || || ||||||||||||||||||||||||||||||||||||||||||| ||||||| 
Sbjct  290  AGCAAAAGAAGGAGAAGATGAAGCGGCTTAACGAACTCAGGAGTTTCTCGGATGCCGTCA  349

Query  337  GTGAAAGGAAGGCGTCAAATCCTGAATCAAGAAAGAAGGTATTCCCATCGTCTTGGCTTT  396
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  350  GTGAAAGGAAGGCGTCAAATCCTGAATCAAGAAAGAAGGTATTCCCATCTTCTTGGCTTT  409

Query  397  GCCCAGGTAAGGCTCATTCACAAGAAGTCTCACAAGGTCATGATCCACCTAGAGACAGCA  456
            | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  410  GTCAAGGTAAGGCTCATTCACAAGAAGTCTCACAAGGTCATGATCCACCTAGAGACAGCA  469

Query  457  CAAGCGCATTCCTTCCATGA  476
            | ||||||||||||||||||
Sbjct  470  CCAGCGCATTCCTTCCATGA  489



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27067271070


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5