BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29550.1
Length=955
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473164 jgi|Araly1|473164|fgenesh2_kg.1__3118__AT1G29550.1 1153 0.0
Ahg313612 jgi|Araly1|313612|fgenesh1_pm.C_scaffold_1002392 854 0.0
> Ahg473164 jgi|Araly1|473164|fgenesh2_kg.1__3118__AT1G29550.1
Length=935
Score = 1153 bits (624), Expect = 0.0
Identities = 859/966 (89%), Gaps = 42/966 (4%)
Strand=Plus/Plus
Query 1 ATGGTGGTTACGGATTCTCCAGTTTCGGGGATAATGGCTGATCAGAACATCGATCCTAAC 60
||||||||| |||||| | | |||| |||||||||||||||||||||||||||||||
Sbjct 1 ATGGTGGTTGTTGATTCTTCGGCATCGGCGATAATGGCTGATCAGAACATCGATCCTAAC 60
Query 61 ACCACGACGAGCCCTAGTCC-TAAAGAGAAGCATGTTTCTGCGATTAAGGCTATCTCCGG 119
||| |||||| |||||| || | |||||||||||||| | ||||||||||||||||| ||
Sbjct 61 ACCGCGACGAACCCTAG-CCGTCAAGAGAAGCATGTTCCGGCGATTAAGGCTATCTCGGG 119
Query 120 CGACGAGAAAGCTCCGTCGAAGGAG--AAA-AA-GA--ACTACGCGTCGAAGAAATCAAC 173
|||||||||| |||||||||||||| ||| || || |||||||||| |||||||||||
Sbjct 120 CGACGAGAAATCTCCGTCGAAGGAGAAAAAGAACGATGACTACGCGTCAAAGAAATCAAC 179
Query 174 TACCGTAATCCAGAAATCGCACTGTTTCCAGAATTCTTGGACATTTTGGTTCGATAATCC 233
||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct 180 CACCGTAATCCAGAAATCTCACTGCTTCCAGAATTCTTGGACCTTTTGGTTCGATAATCC 239
Query 234 TTCCTCCAAATCGAATCAAGTCATATGGGGAAGCTCTTTGAGATCCTTGTATACATTCGG 293
|||||| |||||||||||||||| ||||||||| ||||||||||| ||||| |||||||
Sbjct 240 TTCCTCGAAATCGAATCAAGTCACATGGGGAAGTTCTTTGAGATCTTTGTACACATTCGC 299
Query 294 TACTATCGAAGAGTTCTGGAGTCTCTACAATAACATTCATCCTCCAACCAAGTGGGTTTC 353
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 300 TACTATCGAAGAGTTCTGGAGTCTTTACAATAACATTCATCCTCCAACCAAGTGGGTTCC 359
Query 354 GGGGGCGGATCTTTACTGCTTCAAAGATAAGATTGAACCAAAATGGGAAGATCCTATCTG 413
||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 360 AGGGGCGGATCTCTACTGCTTCAAACATAAGATTGAACCAAAATGGGAAGATCCGATCTG 419
Query 414 TGCTAATGGAGGAAAATGGAGTATGATGTTCCCT-AA--AGCTACACTAGAATGCAATTG 470
|||||||||||||||||||| |||| | |||||| || |||||||||||||| ||||||
Sbjct 420 TGCTAATGGAGGAAAATGGACTATGTTTTTCCCTAAAGCAGCTACACTAGAATCCAATTG 479
Query 471 GCTTAACACGTTACTTGCGTTGGTTGGTGAGCAATTTGACCAAGGAGATGAGATCTGTGG 530
|||||||||| |||||||| ||||||||||||||||||||||||||||| |||| |||||
Sbjct 480 GCTTAACACGCTACTTGCGATGGTTGGTGAGCAATTTGACCAAGGAGATCAGATTTGTGG 539
Query 531 AGCAGTTTTGAACTTCAGAGCGAGAGGGGACAGGATCTCTCTATGGACAAAGAACGCTGC 590
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 540 GGCAGTTTTGAACTTCAGAACCAGAGGGGACAGGATCTCTCTATGGACAAAGAACGCTGC 599
Query 591 AAATGAGGAGGCTCAGCTAAGCATTGGGAAGCAGTGGAAGGAACTTCTTGGCTACAATGA 650
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 600 AAATGAGGAGGCTCAGCTAAGCATTGGGAAGCAGTGGAAGGAACTTCTTGGCTACAGTGA 659
Query 651 GACAATCGGATTTATAGTTCATGAGGATGCAAAGACTCTTGATCGTGATGCTAAACGTCG 710
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CACAATCGGATTTATAGTTCATGAGGATGCAAAGACTCTTGATCGTGATGCTAAACGTCG 719
Query 711 ATATACTGTATGAGATTCAACAGTTTTACTTGTCAGCTTCGCCGGGGAAATCG-AGAAGA 769
|||||||||||||||||| ||||||||||||||||||||||||||||||| | || |||
Sbjct 720 ATATACTGTATGAGATTC-ACAGTTTTACTTGTCAGCTTCGCCGGGGAAAAAGAAG-AGA 777
Query 770 CGTAAAAGGGGAAGTCAACATGACCTTTAGTTGCCTCTGATCTATCTTTACTGTaaaaaa 829
| | ||||| ||||| | || | | | || ||||| | | | ||| | |
Sbjct 778 CTTCGAAGGGAAAGTC-ATAT-A-C---A-TTACCTCT-A-GT-TGTTT-C--T------ 818
Query 830 aGATGCACATTTAGTTCACATTTTCAACTATCAGAATTGTTGAAACGGATCTGTATCAAA 889
||| | || | || || | | || ||||||||||||||||||||| |||||||||
Sbjct 819 -GAT-C-TATCT--TT-AC--TGT-AAAAATCAGAATTGTTGAAACGGATTTGTATCAAA 869
Query 890 AGTACATGATTTCGTAATTTTCTTAGTGGTATAAAGGAAAAGGAATTTCGAAATTACATT 949
||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||
Sbjct 870 TGTACATGATTTCGTAATTTTCTTAGTGGTATAATGAAAAAGGAATTTCGAAATTATATT 929
Query 950 TCTTAC 955
||||||
Sbjct 930 TCTTAC 935
> Ahg313612 jgi|Araly1|313612|fgenesh1_pm.C_scaffold_1002392
Length=597
Score = 854 bits (462), Expect = 0.0
Identities = 539/576 (94%), Gaps = 5/576 (1%)
Strand=Plus/Plus
Query 152 ACTACGCGTCGAAGAAATCAACTACCGTAATCCAGAAATCGCACTGT-TTCCAGAATTCT 210
||||||||| |||||||||||| |||||||||||||||||||||| | ||||||| ||||
Sbjct 23 ACTACGCGTTGAAGAAATCAACCACCGTAATCCAGAAATCGCACT-TCTTCCAGAGTTCT 81
Query 211 TGGACATTTTGGTTCGATAATCCTTCCTCCAAATCGAATCAAGTCATATGGGGAAGCTCT 270
||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||| |||
Sbjct 82 TGGACCTTTTGGTTCGATAATCCTTCCTCGAAATCGAATCAAGTCACATGGGGAAGTTCT 141
Query 271 TTGAGATCCTTGTATACATTCGGTACTATCGAAGAGTTCTGGAGTCTCTACAATAACATT 330
|||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 142 TTGAGATCTTTGTATACATTCGCTACTATCGAAGAGTTCTGGAGTCTTTACAATAACATT 201
Query 331 CATCCTCCAACCAAGTGGGTTTCGGGGGCGGATCTTTACTGCTTCAAAGATAAGATTGAA 390
||||||||||||||||||||| | ||||||||||| |||||||||||| |||||||||||
Sbjct 202 CATCCTCCAACCAAGTGGGTTCCAGGGGCGGATCTCTACTGCTTCAAACATAAGATTGAA 261
Query 391 CCAAAATGGGAAGATCCTATCTGTGCTAATGGAGGAAAATGGAGTATGATGTTCCCT-AA 449
|||||||||||||||||||||||||||||||||||||| |||| |||| | |||||| ||
Sbjct 262 CCAAAATGGGAAGATCCTATCTGTGCTAATGGAGGAAAGTGGACTATGTTTTTCCCTAAA 321
Query 450 --AGCTACACTAGAATGCAATTGGCTTAACACGTTACTTGCGTTGGTTGGTGAGCAATTT 507
|||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 322 GCAGCTACACTAGAATCCAATTGGCTTAACACGCTACTTGCGTTGGTTGGTGAACAATTT 381
Query 508 GACCAAGGAGATGAGATCTGTGGAGCAGTTTTGAACTTCAGAGCGAGAGGGGACAGGATC 567
||||||||||||||||| ||||| |||||||||||||||||| |||||||||| ||||||
Sbjct 382 GACCAAGGAGATGAGATTTGTGGGGCAGTTTTGAACTTCAGAACGAGAGGGGATAGGATC 441
Query 568 TCTCTATGGACAAAGAACGCTGCAAATGAGGAGGCTCAGCTAAGCATTGGGAAGCAGTGG 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 TCTCTATGGACAAAGAACGCTGCAAATGAGGAGGCTCAGCTAAGCATTGGGAAGCAGTGG 501
Query 628 AAGGAACTTCTTGGCTACAATGAGACAATCGGATTTATAGTTCATGAGGATGCAAAGACT 687
|||||||||||||| |||||||||| ||| ||||| ||||||||||||||||||||||||
Sbjct 502 AAGGAACTTCTTGGTTACAATGAGAAAATTGGATTCATAGTTCATGAGGATGCAAAGACT 561
Query 688 CTTGATCGTGATGCTAAACGTCGATATACTGTATGA 723
||||||||| |||||||| |||| ||||||||||||
Sbjct 562 CTTGATCGTCATGCTAAAAGTCGGTATACTGTATGA 597
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35454312810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5