BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29560.1
Length=2179
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921996 jgi|Araly1|921996|scaffold_103277.1 562 4e-159
> Ahg921996 jgi|Araly1|921996|scaffold_103277.1
Length=1463
Score = 562 bits (304), Expect = 4e-159
Identities = 407/455 (89%), Gaps = 14/455 (3%)
Strand=Plus/Plus
Query 560 CAGACTCA-GTTTACAAACGCTCTAACGCT-GACACGCGAGTGAGTCTGCCACAACAGAG 617
|||| ||| | |||||||| ||||| || | |||||||||| | ||||||||||||||||
Sbjct 366 CAGATTCATGATTACAAACACTCTACCG-TAGACACGCGAGAGTGTCTGCCACAACAGAG 424
Query 618 ACGACTGAAAGATGTGGTGGAGG-CGCATAGG-GTACGCCGTGAAACAGAGTCAAGATTA 675
|| ||||| ||||||||||| || ||||||| | ||||||||||||||||||||||||
Sbjct 425 ACAACTGAGAGATGTGGTGG-GGATGCATAGGAG-ACGCCGTGAAACAGAGTCAAGATTC 482
Query 676 TGGCACCAAGAGAGGGATAGATCTCTGGTTTGGGGAG-GAAGTGAACCCAGGATGAGATT 734
|||||||| | |||||||||||||| ||||| ||| ||| |||| ||| ||||||||
Sbjct 483 TGGCACCAGGGGAGGGATAGATCTCCAATTTGGAGAGAGAA-TGAATACAGAATGAGATT 541
Query 735 TGATGAAAGTACTCAGGGTTGGAGAGATAGTGACTATGAATCCAAATGGAGGTTTCATGA 794
||||||||| ||||||| |||| |||||||||||||||| ||| ||||||| |||||||
Sbjct 542 TGATGAAAGAACTCAGGATTGGCTAGATAGTGACTATGAAACCAGATGGAGGGTTCATGA 601
Query 795 GAGAACTCCGGATTGGGATTGGAGAGATAGTGAATCCAGAATGAGATCTCATGAAAGAAC 854
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 602 GAGAACTCCGGATTGGGATTGGAGAGATAGTGAATCCAGAATGAGATTTGATGAAAGAAC 661
Query 855 TCAGGATAGGAGA-GGAAGTGAATCCCAAGGGGTATTTGATGAGAGAACAGAGAGGAGAC 913
||||||||||||| ||| ||||||||||| |||||||||||||||||||| |||||||||
Sbjct 662 TCAGGATAGGAGAAGGA-GTGAATCCCAATGGGTATTTGATGAGAGAACACAGAGGAGAC 720
Query 914 AAGAACCAGTGCGATGGCCCGGTGAAGAGTGTTGGTGTCTGCGGTGTCGAAACGGAGGAA 973
| |||||||||||| |||||||||||||||||||||||||||||||| |||||| |||
Sbjct 721 ACGAACCAGTGCGA---CCCGGTGAAGAGTGTTGGTGTCTGCGGTGTCGCAACGGAAGAA 777
Query 974 GTTGCCGTTACAATCATCCTACTCAACTTCCACAG 1008
||||||||||||||||||| |||||||||||||||
Sbjct 778 GTTGCCGTTACAATCATCCAACTCAACTTCCACAG 812
Score = 329 bits (178), Expect = 4e-89
Identities = 225/247 (91%), Gaps = 6/247 (2%)
Strand=Plus/Plus
Query 257 AGAACTTACTCTCAACTTTAATGGCAGACGCTGGAGATAATCAGAGAAGAAGCGATGAAA 316
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 AGAACTTACTCTCAACTTTAATGGCTGACGCTGGAGATAATCAGAGAAGAAGCGATGAAA 60
Query 317 AAGAGTCGATATCAACTGAAGAAACGAAGGAGAATGAAGACTTGGGATCTGGAAGAAACG 376
||||||||| ||| | |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 AAGAGTCGAAATCCATTGAAGAAACGAAGGAGAATGAAGACTTGGGATCTGGAATAAACG 120
Query 377 ACACAGGTCATCATGT--AT-A---CAACGAGGGACACGAAGAGGTACTAGAGTATCTGA 430
|||||||||||||||| || | |||| ||||| | |||||||||| |||||||||||
Sbjct 121 ACACAGGTCATCATGTGTATTATTACAACCAGGGAGATGAAGAGGTACGAGAGTATCTGA 180
Query 431 AACAAGAGAGACTGAAAGATGCTGATATGCAGAGGAAAAGGCATGAAACAGAGTCGAAAT 490
||||||||||||||||||| | ||| |||| ||||| ||||||||||||||||||| ||
Sbjct 181 AACAAGAGAGACTGAAAGACGTTGAGATGCGGAGGAGAAGGCATGAAACAGAGTCGCGAT 240
Query 491 CCATTGA 497
|||||||
Sbjct 241 CCATTGA 247
Score = 226 bits (122), Expect = 6e-58
Identities = 151/165 (92%), Gaps = 1/165 (1%)
Strand=Plus/Plus
Query 1044 GTATTTTCTGAGGGGATATTGTAAGTTCGGCTCAGTTTGTGGATTTCAACACATAAGGGA 1103
|||||||| ||||||||| |||||||| |||||| ||||| ||||||||||||||||||
Sbjct 812 GTATTTTCGGAGGGGATACTGTAAGTTGGGCTCATTTTGTAAATTTCAACACATAAGGGA 871
Query 1104 CAGGGATGTTGCAGAACCTATGTATGAGAATTGGAGTTTTGATGTGAGAACTCAGAGGAG 1163
|||||||||||||||| |||||||| || ||||||| ||||||| |||||||||||||||
Sbjct 872 CAGGGATGTTGCAGAAACTATGTATCAGGATTGGAGATTTGATGAGAGAACTCAGAGGAG 931
Query 1164 ATATGAAATAGAGTACTCAGGATTCAGGCCAGAGAAGAGGGCAAA 1208
| | ||||||||||||||||||||||||||||||||||||| |||
Sbjct 932 ACACGAAATAGAGTACTCAGGATTCAGGCCAGAGAAGAGGG-AAA 975
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82008297485
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5