BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29570.1
Length=966
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921997 jgi|Araly1|921997|scaffold_103278.1 361 7e-99
Ahg921998 jgi|Araly1|921998|scaffold_103279.1 167 2e-40
> Ahg921997 jgi|Araly1|921997|scaffold_103278.1
Length=850
Score = 361 bits (195), Expect = 7e-99
Identities = 237/257 (92%), Gaps = 4/257 (2%)
Strand=Plus/Plus
Query 667 gctcaagagaatctgcaacaacagagacagagagatagcattgagaggcagaggagagag 726
||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||
Sbjct 477 GCTCAAGAGAATCTGCAGGAGCAGAGACAGAGAGATAGCATTGAGAGGCAGGGGAGAGAG 536
Query 727 gctcaagagaatctgcaacaacagagaTTACAGGACATGCCAGAGAATCACA-ACGTAGA 785
||||||||||||||||| ||||||||||| |||||||||||||||||||| | |||| |
Sbjct 537 GCTCAAGAGAATCTGCATCAACAGAGATTTCAGGACATGCCAGAGAATCA-AGCCGTAAA 595
Query 786 TGATCAACAGAATCTGCAGGAACAGAGACGGATAAGCATTGAGAAGGAGAGAACAGAAGC 845
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 596 TGCTCAACAGAATCTGCAGGAACAGAGACGGATAAGCATTGAGAATGAGAGAACAGAAGC 655
Query 846 TCGTTTGAGACTAGAACAGATCCGACCCACTGTTTCATTTCCAATAAACGAATTTATTCG 905
|||||||||| |||| |||||||||||||||||| |||||||| ||||||||| ||||||
Sbjct 656 TCGTTTGAGAATAGAGCAGATCCGACCCACTGTTGCATTTCCATTAAACGAATATATTCG 715
Query 906 AGCC-GTAGTGTTGCTG 921
|||| | |||| |||||
Sbjct 716 AGCCAG-AGTGGTGCTG 731
Score = 171 bits (92), Expect = 1e-41
Identities = 119/132 (90%), Gaps = 2/132 (2%)
Strand=Plus/Plus
Query 127 AAAGAGAGGATGAGGCAGTCGAGTCCGTATCCAGTTCGTCCCGGTAAA-AAAGACTGTCA 185
||||||||||||| ||||||||||||||||||||||||||||||| | ||| |||||||
Sbjct 183 AAAGAGAGGATGACGCAGTCGAGTCCGTATCCAGTTCGTCCCGGTGTAGAAA-ACTGTCA 241
Query 186 GTTTTACCTCAAAAATGGTCTGTGTCGCTATAGAAGTAGTTGCCGTTTCAATCATCCTAC 245
|| |||| |||||| |||| ||||||||| | ||||||||||||||| |||||||||||
Sbjct 242 GTGTTACATCAAAACTGGTTTGTGTCGCTTTGGAAGTAGTTGCCGTTACAATCATCCTAA 301
Query 246 TCAACGTCCACA 257
||||||||||||
Sbjct 302 TCAACGTCCACA 313
Score = 167 bits (90), Expect = 2e-40
Identities = 114/126 (90%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 1 ATGGCAGACGCTGGAGATAATCAGCAAGAAGCTGAGAGAAGAAGCGATGAAACAGAGTCG 60
|||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 21 ATGGCAGACGCTCGAGAGAATCAGCAAGAATCTGAGAGAAGAAGCGATGAAACAGAGTCG 80
Query 61 AGATCCATTAAAGAACCGAAGGAGAAAGAAGACGAAGATGAGAATCCTCAGGATCAAATA 120
| |||||| ||||||| |||||||| ||||||||||||||||||| ||| || |||| |
Sbjct 81 ATCTCCATTGAAGAACCCAAGGAGAAGGAAGACGAAGATGAGAATCTTCAAGAACAAAGA 140
Query 121 CAGAGC 126
||||||
Sbjct 141 CAGAGC 146
> Ahg921998 jgi|Araly1|921998|scaffold_103279.1
Length=930
Score = 167 bits (90), Expect = 2e-40
Identities = 115/127 (91%), Gaps = 2/127 (2%)
Strand=Plus/Plus
Query 1 ATGGCAGACGCTGGAGATAATCAGCAAGAAGCTGAGAGAAGAAGCGATGAAACAGAGTCG 60
|||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 21 ATGGCAGACGCTCGAGAGAATCAGCAAGAAGCTGAGAGAAGAAGCGATGAAATAGAGTCG 80
Query 61 AGATCCATTAAAGAACCGAAGGAGAAAGAA-GACGAAGATGAGAATCCTCAGGATCAAAT 119
||||||||| ||||||| |||||||| ||| |||||||||||||||| ||| || ||||
Sbjct 81 AGATCCATTGAAGAACCCAAGGAGAA-GAAAGACGAAGATGAGAATCTTCAAGAACAAAA 139
Query 120 ACAGAGC 126
|| ||||
Sbjct 140 ACCGAGC 146
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35873664897
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5