BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29590.2
Length=1136
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473164 jgi|Araly1|473164|fgenesh2_kg.1__3118__AT1G29550.1 1051 0.0
Ahg313612 jgi|Araly1|313612|fgenesh1_pm.C_scaffold_1002392 861 0.0
> Ahg473164 jgi|Araly1|473164|fgenesh2_kg.1__3118__AT1G29550.1
Length=935
Score = 1051 bits (569), Expect = 0.0
Identities = 681/733 (93%), Gaps = 15/733 (2%)
Strand=Plus/Plus
Query 136 ATGGTGGTTATGGATTCTCCAGTTTCGGGGAGAATGGCTGATCAGAACATCGATCCTAAC 195
||||||||| | |||||| | | |||| || ||||||||||||||||||||||||||||
Sbjct 1 ATGGTGGTTGTTGATTCTTCGGCATCGGCGATAATGGCTGATCAGAACATCGATCCTAAC 60
Query 196 ACCACGACGAGCCCTAGTCC-T-ATAGAGAAGCATGTTTCGGCGATTAAGGCTATCTCCG 253
||| |||||| |||||| || | | ||||||||||||| ||||||||||||||||||| |
Sbjct 61 ACCGCGACGAACCCTAG-CCGTCA-AGAGAAGCATGTTCCGGCGATTAAGGCTATCTCGG 118
Query 254 GCGACGAGAAAGCTCCGTCGAAGGAG--AAA-AA-GA--ACTACGCGTCGAAGAAATCAA 307
||||||||||| |||||||||||||| ||| || || |||||||||| ||||||||||
Sbjct 119 GCGACGAGAAATCTCCGTCGAAGGAGAAAAAGAACGATGACTACGCGTCAAAGAAATCAA 178
Query 308 CTACCGTAATCCAGAAATCGCACTGTTTCCAGAATTCTTGGACATTTTGGTTCGATAATC 367
| ||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||
Sbjct 179 CCACCGTAATCCAGAAATCTCACTGCTTCCAGAATTCTTGGACCTTTTGGTTCGATAATC 238
Query 368 CTTCCTCCAAATCGAATCAAGTCATATGGGGAAGCTCTTTGAGATCTTTGTATACATTCG 427
||||||| |||||||||||||||| ||||||||| ||||||||||||||||| |||||||
Sbjct 239 CTTCCTCGAAATCGAATCAAGTCACATGGGGAAGTTCTTTGAGATCTTTGTACACATTCG 298
Query 428 CTACCATCGAAGAGTTCTGGAGTCTTTACAATAACATTCATCCTCCAACCAAGTGGGTGT 487
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 299 CTACTATCGAAGAGTTCTGGAGTCTTTACAATAACATTCATCCTCCAACCAAGTGGGT-T 357
Query 488 -CAGGGTCGGATCTCTACTGCTTCAAAGATAAGATTGAACCAAAATGGGAAGATCCTATC 546
||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 358 CCAGGGGCGGATCTCTACTGCTTCAAACATAAGATTGAACCAAAATGGGAAGATCCGATC 417
Query 547 TGTGCCAATGGAGGAAAATGGACTATGTTTTTCCCT--AG-AGCTACACTAGAATCTAAT 603
||||| |||||||||||||||||||||||||||||| || ||||||||||||||| |||
Sbjct 418 TGTGCTAATGGAGGAAAATGGACTATGTTTTTCCCTAAAGCAGCTACACTAGAATCCAAT 477
Query 604 TGGCTTAACACGTTACTTGCGTTGGTTGGTGAGCAATTTGACCAAGGAGATGAGATCTGT 663
|||||||||||| |||||||| ||||||||||||||||||||||||||||| |||| |||
Sbjct 478 TGGCTTAACACGCTACTTGCGATGGTTGGTGAGCAATTTGACCAAGGAGATCAGATTTGT 537
Query 664 GGAGCAGTTTTGAACTTCAGAACGAGAGGGGACAGGATCTCTCTATGGACAAAGAAAGCT 723
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 538 GGGGCAGTTTTGAACTTCAGAACCAGAGGGGACAGGATCTCTCTATGGACAAAGAACGCT 597
Query 724 GCAAATGAGGAGGCTCAGCTAAGCATTGGGAAGCAGTGGAAGGAACTTCTTGGCTACAAT 783
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 598 GCAAATGAGGAGGCTCAGCTAAGCATTGGGAAGCAGTGGAAGGAACTTCTTGGCTACAGT 657
Query 784 GACACAATCGGATTTATAGTTCATGAGGATGCAAAGACTCTTGATCGTGATGCTAAACGT 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GACACAATCGGATTTATAGTTCATGAGGATGCAAAGACTCTTGATCGTGATGCTAAACGT 717
Query 844 CGATATACTATAT 856
||||||||| |||
Sbjct 718 CGATATACTGTAT 730
> Ahg313612 jgi|Araly1|313612|fgenesh1_pm.C_scaffold_1002392
Length=597
Score = 861 bits (466), Expect = 0.0
Identities = 540/575 (94%), Gaps = 7/575 (1%)
Strand=Plus/Plus
Query 287 ACTACGCGTCGAAGAAATCAACTACCGTAATCCAGAAATCGCACTGT-TTCCAGAATTCT 345
||||||||| |||||||||||| |||||||||||||||||||||| | ||||||| ||||
Sbjct 23 ACTACGCGTTGAAGAAATCAACCACCGTAATCCAGAAATCGCACT-TCTTCCAGAGTTCT 81
Query 346 TGGACATTTTGGTTCGATAATCCTTCCTCCAAATCGAATCAAGTCATATGGGGAAGCTCT 405
||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||| |||
Sbjct 82 TGGACCTTTTGGTTCGATAATCCTTCCTCGAAATCGAATCAAGTCACATGGGGAAGTTCT 141
Query 406 TTGAGATCTTTGTATACATTCGCTACCATCGAAGAGTTCTGGAGTCTTTACAATAACATT 465
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 142 TTGAGATCTTTGTATACATTCGCTACTATCGAAGAGTTCTGGAGTCTTTACAATAACATT 201
Query 466 CATCCTCCAACCAAGTGGGTGT-CAGGGTCGGATCTCTACTGCTTCAAAGATAAGATTGA 524
|||||||||||||||||||| | ||||| |||||||||||||||||||| ||||||||||
Sbjct 202 CATCCTCCAACCAAGTGGGT-TCCAGGGGCGGATCTCTACTGCTTCAAACATAAGATTGA 260
Query 525 ACCAAAATGGGAAGATCCTATCTGTGCCAATGGAGGAAAATGGACTATGTTTTTCCCT-- 582
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 261 ACCAAAATGGGAAGATCCTATCTGTGCTAATGGAGGAAAGTGGACTATGTTTTTCCCTAA 320
Query 583 AG-AGCTACACTAGAATCTAATTGGCTTAACACGTTACTTGCGTTGGTTGGTGAGCAATT 641
|| ||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||
Sbjct 321 AGCAGCTACACTAGAATCCAATTGGCTTAACACGCTACTTGCGTTGGTTGGTGAACAATT 380
Query 642 TGACCAAGGAGATGAGATCTGTGGAGCAGTTTTGAACTTCAGAACGAGAGGGGACAGGAT 701
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct 381 TGACCAAGGAGATGAGATTTGTGGGGCAGTTTTGAACTTCAGAACGAGAGGGGATAGGAT 440
Query 702 CTCTCTATGGACAAAGAAAGCTGCAAATGAGGAGGCTCAGCTAAGCATTGGGAAGCAGTG 761
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 441 CTCTCTATGGACAAAGAACGCTGCAAATGAGGAGGCTCAGCTAAGCATTGGGAAGCAGTG 500
Query 762 GAAGGAACTTCTTGGCTACAATGACACAATCGGATTTATAGTTCATGAGGATGCAAAGAC 821
||||||||||||||| |||||||| | ||| ||||| |||||||||||||||||||||||
Sbjct 501 GAAGGAACTTCTTGGTTACAATGAGAAAATTGGATTCATAGTTCATGAGGATGCAAAGAC 560
Query 822 TCTTGATCGTGATGCTAAACGTCGATATACTATAT 856
|||||||||| |||||||| |||| |||||| |||
Sbjct 561 TCTTGATCGTCATGCTAAAAGTCGGTATACTGTAT 595
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42354560787
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5