BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29600.1
Length=1170
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313613 jgi|Araly1|313613|fgenesh1_pm.C_scaffold_1002393 793 0.0
Ahg912766 jgi|Araly1|912766|Al_scaffold_0001_3020 388 4e-107
> Ahg313613 jgi|Araly1|313613|fgenesh1_pm.C_scaffold_1002393
Length=888
Score = 793 bits (429), Expect = 0.0
Identities = 698/819 (85%), Gaps = 54/819 (7%)
Strand=Plus/Plus
Query 1 ATGGCTAACGTTTCGTTTACTTTTGATTCTCAGGAACAAAATAAGGAATTGAGGCCGAGT 60
|||||||||||||| |||||| |||||||||||| ||||| | |||||||||||||||||
Sbjct 1 ATGGCTAACGTTTCTTTTACTCTTGATTCTCAGGGACAAACTCAGGAATTGAGGCCGAGT 60
Query 61 AGATTAGTGGGTAGATCTGATGAGAGAAATGGTAGGAGACAGGGAACAGAGCAAAAGAAG 120
|||||| |||||||||||||||||||| |||||||||||| |||| ||||| | |||||
Sbjct 61 GGATTAGGGGGTAGATCTGATGAGAGAACTGGTAGGAGACATGGAAAAGAGCCAGAGAAG 120
Query 121 AAGGAGAAAGAAGACTCGGGTTTTAGAGTAAGCGAAGAGGGTGAGATTCCT-TTGCAACA 179
| |||||||||||||| | ||||| || ||||||| ||||||||||||||| | |||||
Sbjct 121 ATGGAGAAAGAAGACTTGAGTTTTGGAATAAGCGAGGAGGGTGAGATTCCTGAT-CAACA 179
Query 180 AGGGTCAAATACTGACTCATACGCGCGGGATGATCTGACACAACAACAGAGAGTGAGTGA 239
|| |||| || | |||||| ||||||| || |||||| ||||||||||||||||||| |
Sbjct 180 AGAGTCAGATGCAGACTCAGACGCGCGATATTATCTGAGACAACAACAGAGAGTGAGTAA 239
Query 240 TGTTGTGATGCAGAGGAGAAGCCATGAAACAGAGTCGAGATTATGGCAAAGGGCTAGAAC 299
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TGTTGAGATGCAGAGGAGAAGCCATGAAACAGAGTCGAGATTATGGCAAAGGGCTAGAAC 299
Query 300 TCAGGATAGGAGAGGAAGTGAATCCAGAATGATGTTTGATGG-GAGAACTCAGTGGAG-T 357
|| ||| ||||||||||| ||||| ||||||||| || || |||||||||| |||| |
Sbjct 300 TCCTGATTCGAGAGGAAGTGGATCCACAATGATGTTGGA-GGAGAGAACTCAGGGGAGAT 358
Query 358 CACGCACCGGTGCTATCGAGTGCGTATCCAGTTCGCCCCGGTGAAGATAATTGTCTGTTT 417
| || |||||||||| |||||||||||| |||||||||||||||| ||||||| ||||
Sbjct 359 C-CGAACCGGTGCTA---AGTGCGTATCCAATTCGCCCCGGTGAAGAAAATTGTCCGTTT 414
Query 418 TATATGAAAAACCATCTGTGTGAATGGGGAAGCGAGTGTTGTTACAATCATCCTCCTCTA 477
||| | ||||| |||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 415 TATCTAAAAAATCATCTGTGTGGCTGGGGAAGCGATTGTTGTTACAATCATCCTCCTCTA 474
Query 478 CAAGAGATTCCGTGCAGGATTGGTAAGAAGCTGGATTGCAAG--------G-CAGGAGCT 528
|| |||||||||| |||||||||||| ||||||||||||||| | ||||| ||
Sbjct 475 CATGAGATTCCGTACAGGATTGGTAATAAGCTGGATTGCAAGTTTTTTAAGGCAGGATCT 534
Query 529 TGTAAGAGAGGCTCAAATTGTCCATTTAATCACCCAAAGGAAAGGGATGGTGATAGTTTA 588
|||||||||||||||||||||| |||| ||||||||| || | |||||| || |
Sbjct 535 TGTAAGAGAGGCTCAAATTGTCAATTTTATCACCCAA-GG---G--ATGGTGC-AGA--A 585
Query 589 CCTATGCCTCAGGGTAGAACTCCGGATTTGAGAAGGAATGATTCAGGGAGGAGG---TAC 645
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 586 CCTATGCGTCAGGGTAGAACTCCGGATTTGAGAAGGAATGATTCAGGGAGGAGGAGGTAC 645
Query 646 AATACAGAGTCAAGATCATGGCCAGAGAATAAGGAGAAAGAAG--T--GG-----GC--- 693
|| |||||| ||||||| ||||||||||| | ||||||||||| | || |
Sbjct 646 AAAACAGAGGCAAGATCCTGGCCAGAGAAGAGGGAGAAAGAAGACTCTGGATTTAGAAGA 705
Query 694 --C-A-GT---T---T--CGTGATCACCAAGACTCTAAAGAAGACGCGCAAGAGGTTCTG 741
| | || | | |||||||||||||||||| | |||||| |||||||| |||||
Sbjct 706 AACGAAGTGGGTCAGTTTCGTGATCACCAAGACTCTGACGAAGACTCGCAAGAGATTCTG 765
Query 742 CTACAACAGAGACCTAGAGATGTTGAGATGCGGAAGAGG 780
|||||||||||||||||||||||||||||||||||||||
Sbjct 766 CTACAACAGAGACCTAGAGATGTTGAGATGCGGAAGAGG 804
> Ahg912766 jgi|Araly1|912766|Al_scaffold_0001_3020
Length=366
Score = 388 bits (210), Expect = 4e-107
Identities = 268/294 (91%), Gaps = 11/294 (4%)
Strand=Plus/Plus
Query 806 AAACCGAGACAAAGGAACATCGAGAGGCAGAGGAGAGAAGCTCAAGAGAATCTGCAACTG 865
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 17 AAACCGAGACAAAGGAACATGGAGAGGCAGAGGAGAGAAGCTCAAGAGAATCTGCAA--- 73
Query 866 CAACAGGAAAGGTTTCAGGTAAAGAAAATGAACTGAGACCTACTTATGTTTATTTGCTGA 925
||||| | ||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 74 CAACA-G--TGGTTTCAGGTAAAGAAACTGAACCGAGACCTACTTATGTTTATTTGCTGA 130
Query 926 TGATGCCAGAGAATCACAACGTAGATGTTCAACAGACTCTGCAGGAACAGAGAAAGAGAA 985
||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||
Sbjct 131 TGATGCCAGAGAATCACAACGTAGATGGTCAACAGAATCTGCAGGAACAAAGAAAGAGAA 190
Query 986 ACATTAAGAAGGCGAGAATCGAAGCTCGTTTGAAACTTGATCAGATCCGAC-CAACTGTT 1044
||||| |||||||||||||||||||||||||||||||||||||||| |||| || |||||
Sbjct 191 ACATTGAGAAGGCGAGAATCGAAGCTCGTTTGAAACTTGATCAGATGCGACGCA-CTGTT 249
Query 1045 GTATTAGAA-AATA-G-TCGAGCCACAAAAATGATGATAGAATGGGGATTTACT 1095
||||| || |||| | |||||||| |||||||||| ||||| ||||||||||
Sbjct 250 GTATTTGACGAATATGATCGAGCCAGTAAAATGATGAGAGAATTGGGATTTACT 303
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43650739965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5