BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29630.2
Length=2522
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473168 jgi|Araly1|473168|fgenesh2_kg.1__3122__AT1G29630.2 3653 0.0
> Ahg473168 jgi|Araly1|473168|fgenesh2_kg.1__3122__AT1G29630.2
Length=2515
Score = 3653 bits (1978), Expect = 0.0
Identities = 2339/2508 (93%), Gaps = 45/2508 (2%)
Strand=Plus/Plus
Query 1 AAAACACCCCTCCTCGA-T-T-GTCGATACAGTCCAGGTTCCTGAAATGTTCTCGTCAGG 57
||||||||||||||||| | | |||||||||||||||| |||||||||||||||||||||
Sbjct 1 AAAACACCCCTCCTCGATTGTCGTCGATACAGTCCAGGCTCCTGAAATGTTCTCGTCAGG 60
Query 58 GCGACATTAGGGTTTCTTCATTCCCGTCCTTCAGATTCGTATTTGAAACAGGAAGGAGAG 117
|||| |||||||||||||||||| ||||||| ||| ||||| ||| ||||||||||||||
Sbjct 61 GCGAAATTAGGGTTTCTTCATTCTCGTCCTTGAGAATCGTA-TTGGAACAGGAAGGAGAG 119
Query 118 AAAAATGGGTATACAAGGGCTTTTGCCGTTGTTGAAATCGATAATGGTACCGATTCATAT 177
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 -GAAATGGGTATTCAAGGGCTTTTGCCGTTGTTGAAATCGATAATGGTACCGATTCATAT 178
Query 178 CAAGGAGCTCGAGGGTTGTATCGTCGCCGTCGATACATATTCATGGCTACACAAAGGGGC 237
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 179 CAAGGAGCTTGAGGGTTGTATCGTCGCCGTCGATACATATTCATGGCTACACAAAGGTGC 238
Query 238 TTTATCTTGTAGCCGAGAGCTCTGCAAGGGATTACCCACCAAGAGGCATATTCAATACTG 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 239 GTTATCTTGTAGCCGAGAGCTCTGCAAGGGATTACCCACCAAGAGGCATATTCAATATTG 298
Query 298 TATGCATAGAGTGAATTTACTTCGCCATCATGGAGTGAAGCCTATCATGGTCTTTGATGG 357
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 299 TATGCATAGAGTGAATTTACTCCGCCATCATGGAGTGAAGCCTATCATGGTCTTCGATGG 358
Query 358 AGGTCCGTTACCGATGAAACTAGAACAAGAGAATAAGCGTGCTAGGTCCAGAAAGGAAAA 417
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 359 AGGTCCATTACCGATGAAACTAGAACAAGAGAATAAGCGTGCTAGATCCAGAAAGGAAAA 418
Query 418 TCTTGCTCGTGCATTGGAGCATGAAGCAAATGGAAATTCCTCAGCTGCTTATGAGTGCTA 477
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TCTTGCACGTGCATTGGAACATGAAGCAAATGGAAATTCCTCAGCTGCTTATGAGTGCTA 478
Query 478 CTCAAAGGCCGTAGATATTTCACCTTCTATTGCACATGAGTTGATACAGGTTCTGAGGCA 537
|||||||| ||||| |||||||||||||||||||| || ||||||||||||||||||||
Sbjct 479 TTCAAAGGCTGTAGACATTTCACCTTCTATTGCACACGAATTGATACAGGTTCTGAGGCA 538
Query 538 GGAGAATGTTGATTACGTTGTTGCTCCTTACGAAGCTGATGCGCAGATGGCATTCTTAGC 597
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 539 GGAGAATGTTGATTACGTTGTTGCTCCTTACGAAGCTGATGCGCAGATGACATTCTTAGC 598
Query 598 TATTACTAAGCAAGTTGATGCGATTATCACTGAGGATTCTGATCTCATACCTTTTGGCTG 657
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 599 TGTTACTAAGCAAGTTGATGCGATTATCACTGAGGATTCTGATCTCGTACCTTTTGGCTG 658
Query 658 CCTAAGAATCATTTTCAAAATGGACAAGTTTGGTCATGGTGTTGAGTTTCAAGCCTCCAA 717
|| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 659 CCCAAGAATCATTTTTAAAATGGATAAGTTTGGTCATGGTGTTGAGTTTCAAGCCTCCAA 718
Query 718 GCTACCCAAAAATAAGGATCTCAGTCTATCAGGATTTTCAAGCCAAATGCTTCTCGAAAT 777
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 719 GCTACCCAAAAATAAGGATCTCAGTCTTTCGGGATTTTCAAGCCAAATGCTTCTCGAAAT 778
Query 778 GTGCATATTAAGTGGCTGCGATTATTTGCAGTCACTTCCAGGAATGGGACTCAAAAGAGC 837
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 779 GTGCATATTAAGTGGTTGCGATTATCTGCAGTCACTTCCAGGAATGGGACTCAAAAGAGC 838
Query 838 ACATGCACTCATTACAAAATTCAAAAGCTATGACAGGGTAATTAAGCACTTAAAGTACAG 897
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 839 TCATGCACTCATTACAAAGTTCAAAAGCTATGACAGGGTAATTAAACACTTAAAGTACAG 898
Query 898 CACAGTTTCAGTTCCTCCTCTTTATGAAGAGTCATTCAAGAGAGCTTTACTGACTTTCAA 957
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 899 CACAGTTTCAGTTCCTCCTCTTTATGAAGAGTCATTCAAGAGAGCCTTACTGACTTTCAA 958
Query 958 GCATCAACGTGTCTATGACCCAAATGCTGAAGATATCATACACTTGTGTGACATTTCTGA 1017
|||||||||||| ||||||||||| |||||||||| |||||||| | ||||||||||||
Sbjct 959 GCATCAACGTGTATATGACCCAAACACTGAAGATATTATACACTTATCTGACATTTCTGA 1018
Query 1018 CAACCTTGGTGAAGATTCAGATTTTG------T-A--G----------G-C---C-CATC 1053
| ||||||| |||||||||||||||| | | | | | | ||||
Sbjct 1019 CTACCTTGGCGAAGATTCAGATTTTGAAAATTTAATTGATTTCTTAACGTCATTCACATC 1078
Query 1054 GATGCCACAAGATATTGCTAAGGGTATAGCTCTAGGCCAGCTTGATCCCTTCACACAGTT 1113
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1079 GATGCCACAACATATTGCTAAGGGTATAGCACTAGGCCAGCTTGATCCCTTCACACAGTT 1138
Query 1114 GCCATTCCAGGCTGAGAGTGTTACTCCTAAATTGGCTGTTGATGATATATCCCGTCCCAA 1173
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1139 GCCATTCCAGGCTGAGAGTGTTACTCCTATATTGGCTGTTGATGTTATATCCCGTCCCAA 1198
Query 1174 AAGTTTCAAACCTGAAACTGTAAAGAAAAAGCTTGATTTGCCAGTCCaaaaaaaCCTTCT 1233
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1199 AAGTTTCAAACCTGAAACTGTAAAGAAAAAGCTTGATTTGCCAGTCCAGAAAAACCTTCT 1258
Query 1234 CACCAAGTACTTCTGCTTTGCGTCTGTTGAGGCAAAAAGAAAATTCAAGGCTCCTAGGAT 1293
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CACAAAGTACTTCTGCTTTGCATCTGTTGAGGCAAAAAGAAAATTCAAGGCTCCTAGGAT 1318
Query 1294 ATCACCAATGTCTCTGACCCCAACTGATGAGTCTCCAAGCATTCCTGATGACAACACACC 1353
|||||||||||||||||||||||||||||| |||||||||| |||||| || || || |
Sbjct 1319 ATCACCAATGTCTCTGACCCCAACTGATGAATCTCCAAGCACTCCTGAGGATAATGCAAC 1378
Query 1354 AGATTTAGATGCTCTTTCAAGCCAGACAACAAATGAATCCCCGGTTTATAGCTTGGGTGA 1413
||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1379 GGATATAGATGCTCTTTCAAGTCAGACAACAAATGAATCCCCGGTTTATAGCTTGGATGA 1438
Query 1414 GAATCCATGTGTTAGCGAAGTTGCAGAGAAAAGAGATTCACCCGATGACGATGCAGTGGA 1473
|||| ||||||||||| ||||||||||||||||||| ||||||||||| |||||| ||||
Sbjct 1439 GAATGCATGTGTTAGCAAAGTTGCAGAGAAAAGAGAGTCACCCGATGATGATGCAATGGA 1498
Query 1474 AAGGAATCACAAGGACCTTCATCATAAATACTGCGAACGGGAAGTGGATA-GGCCGAAGT 1532
|| |||||||||||| ||||||||||||||| |||| ||||||||||| | |||| |||
Sbjct 1499 AAAGAATCACAAGGATCTTCATCATAAATACGGCGATCGGGAAGTGGA-ACGGCCAAAGA 1557
Query 1533 CAGATAGTTTGAAGGTTATAGTAAGAAGCAAGTATTTTAAGCAGAAACAGGAGGACAAAA 1592
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1558 AAGATAGTTTGAAGGTTATAGTAAGAAGCAAGTATTTTAAGCAGAAGCAGGAAGACAAAA 1617
Query 1593 GTCTGAAACAATCGATCCCATGTCTTAATGATTGCTCTGTGATTGGTCAGAGAAAGGCTG 1652
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 GTCTTAAACAATCGATCCCATGTCTTAATGATTGCTCTGTGATTGGTCAGAGAAAGGCTG 1677
Query 1653 TTAAAACTGTGATTAACATGTCAAGCGCGTCTAAAAGAGAAGAGAGTCACAGAGCTATAG 1712
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 TTAAATCTGTGATTAACATGTCAAGCGCGTCTAAAAGAGAAGAGAGTCACAGAGCTATAG 1737
Query 1713 ---CAACAAGTCCATGTTTACACCATGACCGAATCTACAACGATCATGAAGATGCTAAAG 1769
||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1738 CAACAACAAGCCCATGTTTACATCACGACCGAATCTACAACGATCATGAAGATGCTAAAG 1797
Query 1770 AAGCGAGTTTCTCTGCCATGAACGAGGTGGCTGAGAGAACAATAAACACCCACAAGATTA 1829
|||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||| |
Sbjct 1798 AAGCGAGTTTCTCTGCCATGAATGAGGTGGCTGAGAGAACAACAAACATCCACAAGATAA 1857
Query 1830 ACCATCAGATCAATGAAGAAGAACAGAACCCATCCGTTGAAATTCCTTCTGCCTTTAGTA 1889
||||||||||| ||||||| |||||||| |||||||||||||| || |||||||||||||
Sbjct 1858 ACCATCAGATCGATGAAGAGGAACAGAATCCATCCGTTGAAATCCCGTCTGCCTTTAGTA 1917
Query 1890 CTCCCGAGAATGTTATACCTCTCTCTTCCATTGCTATTGATAGTTGCCATGGAGTTGCAA 1949
||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||
Sbjct 1918 CTCCCGAGAATGTTATACCTCTCTCTTCCATTGCTATCAATAGTTTTCATGGAGCTGCAA 1977
Query 1950 CAGGGAAGAGGAAGCTTGACTCAGATGAAAACCTTCACAAGGAAAATTTGAAA-TCCAAG 2008
||||||||||||||||||||| ||||||||| ||||| |||||||| | ||| ||||||
Sbjct 1978 CAGGGAAGAGGAAGCTTGACTTAGATGAAAATCTTCAGAAGGAAAA-TCAAAATTCCAAG 2036
Query 2009 CACATGCGCATGGATGAAACTGATACTGCTCTTAATGCAGAAACACCA-TTAGAAACCGA 2067
|||||||||||||||||||| ||| | | ||| ||||| ||||||||| || ||||||||
Sbjct 2037 CACATGCGCATGGATGAAACAGATCCCGTTCTCAATGCTGAAACACCAGTT-GAAACCGA 2095
Query 2068 TGATGTTGAGAAGTTTGGATCGAACATTTCACATATAGGGCATTACTCAGAAATAGCAGA 2127
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2096 TAATGTTGGGAAGTTTGGATCGAACATTTCACATATAGGGCATTACTCAGAAATAGCAGA 2155
Query 2128 GAAATCAGTGGAAAGATTTGTCTCAGCTATATCGTCTTTCAAATATTCTGGGACTGGCTC 2187
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 2156 GAAATCAGTGGAAAGATTTGTCTCAGCTATTTCATCTTTCAAATATTCTGGGACTGGCTC 2215
Query 2188 TCGTGCTAGCGGTCTCCGTGCCCCTCTCAAAGATATCCGCAACACTTGTCCGTCCAAAGG 2247
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2216 TCGTGCTAGCGGTCTCCGTGCACCTCTCAAAGATATCCGCAACACTTGTCCGTCCAAAGG 2275
Query 2248 GTTATCTCTTAAACCAGACATCAGCAAGTTTGGCTATGCGTCAAGCAACCGACACATGGT 2307
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2276 GTTATCTCCTAAACCAGACATCAGCAAGTTTGGCTATGCGTCAAGCAACTGACACATGGT 2335
Query 2308 GACAAAGTCAAGGAGAATGTGAGCTCAGATTTGTAAGTTAACCATCTCTTTAGAGCCACA 2367
||||||||||||| || ||||| |||| |||||||||||| |||||||||||| ||||||
Sbjct 2336 GACAAAGTCAAGGCGATTGTGATCTCAAATTTGTAAGTTAGCCATCTCTTTAGGGCCACA 2395
Query 2368 TGTGAGAGCTTTAGCTTTAGAATTAACTTCTTGGTCGCATGATGATATTTTTGGTGTTGT 2427
|||||||||||||||||| |||| ||||||||||||||||||| || |||| ||||||||
Sbjct 2396 TGTGAGAGCTTTAGCTTTGGAATCAACTTCTTGGTCGCATGAT-AT-TTTT-GGTGTTGT 2452
Query 2428 GTCTGTATTAGCTTTCTACTTACTGTGCATAGCATTCTTGTTCAAAGA 2475
||||||||||||| | | |||||||||||||||||||||||||||
Sbjct 2453 AACTGTATTAGCTTT-T--T-ACTGTGCATAGCATTCTTGTTCAAAGA 2496
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95073251520
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5