BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29640.1
Length=780
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922003 jgi|Araly1|922003|scaffold_103284.1 660 0.0
> Ahg922003 jgi|Araly1|922003|scaffold_103284.1
Length=462
Score = 660 bits (357), Expect = 0.0
Identities = 430/465 (92%), Gaps = 5/465 (1%)
Strand=Plus/Plus
Query 80 AAAAACATTTGTTTTCTTGAAAATGTCGGAAGAATTCGACGAATCTGAGATCATTTTCTC 139
|||||||| || |||||||||||||| ||| |||||||| ||||||||||| ||||||||
Sbjct 1 AAAAACATCTGATTTCTTGAAAATGTTGGAGGAATTCGATGAATCTGAGATTATTTTCTC 60
Query 140 TGACAATTACTTTCCGA-TTCGCCGGCGAGAAGACGGTAACGAGAAAGAGAATAACCGTC 198
||| | ||||| ||| | |||||||||| |||||||| ||||||||||||||| ||||
Sbjct 61 TGATAGTTACTATCC-AGTTCGCCGGCGGGAAGACGGGAACGAGAAAGAGAAT---CGTC 116
Query 199 CGGTGGATTTCCGGGAAAATTCTGAGAGAGTGTGGAACAAGTCATCTAGACGGAGTAAAA 258
|||||| |||||||||||| |||||||||||| ||||||||||||| | ||||| |||||
Sbjct 117 CGGTGGGTTTCCGGGAAAACTCTGAGAGAGTGAGGAACAAGTCATCGAAACGGACTAAAA 176
Query 259 CGACGCCGTTGCCTTCAGCGGTGACGGCGTTTTCTAGTTCGCTTCCGGTTAACATACCGA 318
||||| |||||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct 177 CGACGACGTTGCCTTCAGCGGTGACGGCGTTTTCGAGTTCGCTTCCGGTGAATATACCGA 236
Query 319 TGAGGAGGTATTCGACGGAGGAGGAATATTCCGATGACGACGGAGGAAGGAAAATGATTC 378
|| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 237 TGCGGAGGTATTCAACGGAGGAGGAATATTCCGATGACGACGGAGGAAGGAGAATGATTC 296
Query 379 CGCCGCATTTGATAGTTGGACGGAGGATGGAAGGAGGTCAAATGGCGTTTTCCGTTTGTA 438
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 297 CGCCGCATTTGATAGTTGGACGGAGGATTGAAGGAGGTCAAATGGCGTTTTCCGTTTGTA 356
Query 439 CAGGTAACGGAAGAACTCTTAAAGGACGAGATCTGAGCCGGGTTCGTAATTCGGTTCTCA 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CAGGTAACGGAAGAACTCTTAAAGGACGAGATCTGAGCCGGGTTCGTAATTCGGTTCTCA 416
Query 499 AATTAACCGGGTTTTTGGAAGCTTGAAATTGGATTAAACCGGACT 543
| |||||||| |||||||||||||||| ||||||| ||||||||
Sbjct 417 AGTTAACCGGATTTTTGGAAGCTTGAATTTGGATTGGACCGGACT 461
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28782802335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5