BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29660.1
Length=1353
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473169 jgi|Araly1|473169|fgenesh2_kg.1__3123__AT1G29660.1 2111 0.0
> Ahg473169 jgi|Araly1|473169|fgenesh2_kg.1__3123__AT1G29660.1
Length=1340
Score = 2111 bits (1143), Expect = 0.0
Identities = 1284/1350 (95%), Gaps = 17/1350 (1%)
Strand=Plus/Plus
Query 11 CACAACGACCACCACTCCTACACTAACACTTATATCACCAACACATTGTGTTCTACTATA 70
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CACAACTACCACCACTACTACACTAACACTTATATCACCAACACATTGTGTTCTACTATA 60
Query 71 CATAAAATTCAGTTCCTAAGTATTTTTGTTT-TGTTTTGTGAGATCGATGGAGAGTTACT 129
||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||
Sbjct 61 CATAAAATTCAGTTCCTAAGTATTTTT-TTTATG-GTTGTGAGATCGATGGAGAGTTACT 118
Query 130 TGAGGAAATGGTGTTTAGTTTCTGTGTGGGTTTTGCTTTTAGGTTTAGGGTTTAAGGTAA 189
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 119 TGAGGAAATGGTGTTTACTTTCTGTGTGGGTTTTGCTTTTAGGTTTAGGGTTTAAGGTCA 178
Query 190 AAGCAGAGCCTCAAGTTCCATGTTACTTCATCTTTGGTGATTCTTTGGTTGACAATGGAA 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 AAGCAGAGCCTCAAGTTCCATGTTACTTCATCTTTGGTGATTCTTTGGTTGACAATGGAA 238
Query 250 ACAACAATCGTCTTAGATCTATTGCAAGAGCCGATTATTTCCCTTACGGCATCGATTTCG 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 ACAACAATCGTCTTAGATCTATTGCAAGAGCCGATTATTTCCCTTACGGCATCGATTTCG 298
Query 310 GCGGCCCCACCGGCCGTTTTTCCAACGGCAGAACCACCGTCGACGTTCTCACTGAGCTAC 369
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 299 GCGGCCCCACCGGCCGTTTTTCCAACGGAAAAACCACCGTCGACGTTCTCACTGAGCTAC 358
Query 370 TTGGATTTGATAACTACATTCCTGCGTATAGTACTGTGAGTGGCCAAG-AGATACTTCAA 428
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 359 TTGGATTTGATAACTACATTCCTGCGTATAGTACTGTGAGTGGCCA-GCAGATACTTCAA 417
Query 429 GGAGTCAACTACGCATCTGCAGCTGCTGGAATCAGAGAAGAAACCGGTGCACAATTGGGA 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GGAGTCAACTACGCATCTGCAGCTGCTGGAATCAGAGAAGAAACCGGTGCACAATTGGGA 477
Query 489 CAAAGGATAACATTTAGTGGGCAAGTAGAGAATTATAAGAACACAGTGGCA-CAAGTGGT 547
||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||
Sbjct 478 GAAAGGATAACATTTAATGGGCAAGTAGAGAATTATAAGAACACAGTGGCAGCA-GTGGT 536
Query 548 GGAGA-TTCTTGGAGACGAGTACACTGCAGCAGATTACCTTAAGAGATGCATTTACTCTG 606
||| | |||||||||||||| ||||||||||||||||||| | |||||||||||||||||
Sbjct 537 GGA-ACTTCTTGGAGACGAGAACACTGCAGCAGATTACCTGAGGAGATGCATTTACTCTG 595
Query 607 TTGGTATGGGAAGCAATGACTATCTTAATAACTACTTCATGCCTCAGTTCTACTCCACTA 666
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 596 TTGGTATGGGAAGCAATGACTATCTTAATAACTACTTCATGCCTCAGTTCTACCCCACTA 655
Query 667 GCAGACAGTACACTCCCGAACAGTATGCTGACGATCTTATCAGTCGTTACAGGGACCAGC 726
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 656 GCAGACAGTACACTCCTGAACAGTATGCTGACGATCTTGTCAGTCGTTACAGGGAGCAGC 715
Query 727 TTAATGCACTGTACAACTATGGAGCTAGAAAGTTTGCATTGGTAGGAATTGGAGCCATTG 786
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 TTAATGCACTATACAACTATGGAGCTAGAAAGTTTGCATTGGTAGGAATTGGAGCCATTG 775
Query 787 GATGTAGTCCGAATGCGCTCGCACAGGGCAGCCAAGACGGAACAACTTGTGTGGAGCGTA 846
||||||| |||||||||||||||||||| |||| || ||||||||||||||||||||||
Sbjct 776 GATGTAGCCCGAATGCGCTCGCACAGGGAAGCCCCGATGGAACAACTTGTGTGGAGCGTA 835
Query 847 TCAACTCGGCCAACCGAATCTTCAACAACAGGCTCATATCTATGGTCCAACAACTAAACA 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 836 TCAACTCGGCCAACCGAATCTTCAACAACAGGCTCATATCTATGGTCCAACAACTCAATA 895
Query 907 ACGCTCATTCCGATGCTA-GTTTCACTTACATCAATGCTTATGGCGCTTTTCAGGATATA 965
|| ||||||||||| | ||| |||||| |||||||||||||||||||| ||||| |||
Sbjct 896 GCGAACATTCCGATGCCAAGTT-CACTTATATCAATGCTTATGGCGCTTTCCAGGACATA 954
Query 966 ATCGCCAATCCCTCTGCTTATGGGTTTACGAATACGAACACTGCGTGTTGCGGAATTGGA 1025
|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 955 ATCGCCAATCCCTCTGCTTATGGGTTTACGGTTACGAACACAGCGTGTTGCGGAATTGGA 1014
Query 1026 AGGAACGGAGGTCAGCTAACATGTTTACCGGGAGAACCCCCGTGCTTGAACCGAGATGAG 1085
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1015 AGGAACGGAGGTCAGCTAACATGTTTACCGGGACAACCCCCGTGCCTGAACCGAGATGAG 1074
Query 1086 TACGTGTTTTGGGATGCATTTCATCCTTCGGCTGCTGCAAACACGGCCATTGCAAAAAGA 1145
||||||||||||||||||||||||||||| ||||| |||||||||| ||||||| |||||
Sbjct 1075 TACGTGTTTTGGGATGCATTTCATCCTTCAGCTGCCGCAAACACGGTCATTGCACAAAGA 1134
Query 1146 TCTTACAATGCACAAAGATCTTCCGACGTTTATCCGATTGATATCTCGCAATTAGCACAG 1205
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1135 TCTTACAATGCACAAAGATCTTCCGACGTTAATCCGATTGATATCTCGCAATTGGCACAG 1194
Query 1206 CTTTGAAAGGACAGAGAATAGGAGAGTTTT-ACAACAATTGTATGCTTTTCAGGTTATAA 1264
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||
Sbjct 1195 CTTTGAAAGGACAGAGAATAGGAGAGTTTTTA-AACAATTGTATGCTTTTCAGGTTCTAA 1253
Query 1265 ATTGAATTATTGGAAATGATT-CTGATGTTATGTGTGTACCCAAAGTGTTCAACTTTATa 1323
|||||||| |||||||| ||| |||| ||||| |||||||||||| ||||| ||||||||
Sbjct 1254 ATTGAATTCTTGGAAAT-ATTTCTGAAGTTATATGTGTACCCAAATTGTTCTACTTTATA 1312
Query 1324 aaaaaaaaTAGGGATTGCATTATCTGAGTT 1353
|||||||| ||| |||||||| ||||||||
Sbjct 1313 AAAAAAAA-AGG-ATTGCATTCTCTGAGTT 1340
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50627233776
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5