BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29670.1
Length=1326
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473170 jgi|Araly1|473170|fgenesh2_kg.1__3124__AT1G29670.1 2067 0.0
> Ahg473170 jgi|Araly1|473170|fgenesh2_kg.1__3124__AT1G29670.1
Length=1306
Score = 2067 bits (1119), Expect = 0.0
Identities = 1249/1312 (95%), Gaps = 7/1312 (1%)
Strand=Plus/Plus
Query 1 CTTCACATTCACTCATATCACTACACTTTCCATTAATTACCAATATATTTTTACTACTTA 60
|||||||||||||||||||||||||||||||||| | | | |||| |||||||||||||
Sbjct 1 CTTCACATTCACTCATATCACTACACTTTCCATT-A-T--CGATATCTTTTTACTACTTA 56
Query 61 AAAAAGATATTGGTCTTGAAATGGAGAGTTACTTAACGAAATGGTGTGTAGTGCTTGTGT 120
|||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 57 AAAAAGATTTTGGTCTTGAAATGGAGAGTTATTTAAATAAATGGTGTGTAGTGCTTGTGT 116
Query 121 TGTTGTGTTTCGGGTTTAGTGTAGTAAAAGCACAAGCACAAGCTCAAGTTCCATGTTTCT 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 117 TGATGTGTTTCGGGTTTAGTGTAGTAAAAGCACAAGCACAAGCTCAAGTTCCATGTTACT 176
Query 181 TTGTTTTTGGTGACTCTTTGGTTGACAATGGAAACAACAACGGTCTTATTTCTATTGCAA 240
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 177 TTATTTTTGGTGACTCTTTGGTTGACAATGGAAACAACAACGGACTTATTTCTATTGCAA 236
Query 241 GATCCAATTACTTCCCTTACGGTATCGATTTCGGCGGCCCTACCGGCCGTTTCTCCAACG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GATCCAATTACTTCCCTTACGGTATCGATTTCGGCGGCCCTACCGGCCGTTTCTCCAACG 296
Query 301 GCAAGACTACTGTTGATGTGATCGCTGAGCTACTTGGATTTAATGGCTACATTCCTGCGT 360
||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 297 GCAAGACCACTGTTGATGAGACCGCTGAGCTACTTGGATTTAATGGCTACATTCCTGCGT 356
Query 361 ACAATACTGTGAGTGGTCGGCAAATACTCTCCGGAGTTAACTACGCTTCCGCAGCTGCTG 420
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 ACAATGCTGTGAGTGGTCGGCAAATACTCTCCGGAGTTAACTACGCTTCCGCAGCTGCTG 416
Query 421 GAATCCGAGAAGAAACCGGTCGACAATTGGGACAAAGGATAAGCTTTAGTGGACAAGTTA 480
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 417 GAATCCGAGAAGAAACCGGTCGACAATTGGGACAAAGGATAAGCTTTAGTGGGCAAGTTA 476
Query 481 GGAACTACCAGACCACAGTATCGCAAGTTGTGCAGCTTCTAGGAGACGAGACTCGTGCAG 540
|||||||||||| ||| ||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 477 GGAACTACCAGAACACGGTATCGCAAGTCGTGCAGCTGCTAGGAGACGAGACTCGTGCAG 536
Query 541 CTGATTACCTCAAGAGATGTATTTACTCTGTTGGTTTAGGAAGCAACGACTATCTCAACA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 CTGATTACCTCAAGAGATGTATTTACTCTGTTGGTTTAGGAAGCAACGACTATCTCAACA 596
Query 601 ACTACTTCATGCCTACGTTTTACTCTTCTAGCAGACAATTCACACCCGAACAATACGCTA 660
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 597 ACTACTTCATGCCTACGTTTTACTCATCTAGCAGACAATTCACACCCGAACAATACGCTA 656
Query 661 ACGATCTCATCAGTCGCTACAGCACCCAGCTCAATGCATTATACAACTATGGGGCTCGAA 720
||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||
Sbjct 657 ACGATCTCATCAGTCGCTACAGCACTCAGCTCAATGCACTATACAATTATGGGGCTCGAA 716
Query 721 AGTTTGCATTGAGTGGAATTGGAGCAGTTGGTTGTAGTCCTAACGCGCTCGCAGGCAGTC 780
|||||||||| || |||||||||||| | || |||||||| ||||| || ||||||||||
Sbjct 717 AGTTTGCATTAAGCGGAATTGGAGCAATCGGCTGTAGTCCAAACGCACTAGCAGGCAGTC 776
Query 781 CCGACGGTAGGACTTGCGTAGACCGCATCAACTCAGCAAACCAGATCTTCAACAACAAGC 840
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 CCGACGGAAGGACTTGCGTAGACCGCATCAACTCAGCAAACCAGATCTTCAACAACAAGC 836
Query 841 TAAGATCTCTTGTTGATCAGCTCAACAACAATCACCCTGATGCAAAGTTCATCTACATCA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 TAAGATCTCTTGTTGATCAGCTCAACAACAATCACCCTGATGCAAAGTTCATCTACATCA 896
Query 901 ATGCTTATGGCATTTTCCAGGACATGATCACAAATCCTGCCAGATTTGGGTTTAGAGTGA 960
|||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct 897 ATGCTTATGGCATTTTCCAGGATATGATCACAAATCCTTCTAGATTTGGGTTTAGAGTGA 956
Query 961 CGAACGCGGGATGTTGCGGTATTGGGAGGAATGCTGGACAGATCACATGTTTACCGGGAC 1020
|||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||| ||||
Sbjct 957 CGAACGCGGGCTGTTGCGGTATCGGGAGGAATGCTGGTCAGATTACATGTTTACCCGGAC 1016
Query 1021 AGAGACCGTGTAGAGACCGCAATGCGTACGTGTTCTGGGACGCATTTCACCCTACTGAAG 1080
||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1017 AGAGACCATGTAGAGACCGCAACGCGTACGTGTTCTGGGACGCATTTCACCCTACCGAAG 1076
Query 1081 CCGCAAATGTGATCATCGCAAGGAGATCGTACAATGCACAATCGGCTTCAGACGCTTACC 1140
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 1077 CCGCAAATGTGATCATCGCAAGGAGATCGTTCAATGCACAATCAGCTTCAGACGCTTACC 1136
Query 1141 CTATGGATATTTCAAGGCTGGCACAGCTTTGAAGAAACATAGTAAA-ATAAGAACTAAAG 1199
||||||||||||||||| |||||||||||||| |||||| || ||| |||| || || |
Sbjct 1137 CTATGGATATTTCAAGGTTGGCACAGCTTTGAGGAAACAGAG-AAATATAATAATTATAC 1195
Query 1200 AAGTTCCACAAACCAATGTGTGATCTTGTTGTGTACCGTACCGCTATTTAAGATTTTCTT 1259
| |||||||||||||||||||||||||||||||||||||||| || ||||| |||| |||
Sbjct 1196 A-GTTCCACAAACCAATGTGTGATCTTGTTGTGTACCGTACCCCTTTTTAATATTTCCTT 1254
Query 1260 GACGTAATTGAAATCGAGTAAAACATTATTCTATATACATTCGATTTCTATA 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 GACGTAATTGAAATCGAGTAAAACATTATTCTATATACATTCGATTTCTATA 1306
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49597915017
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5