BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29680.1
Length=854
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922006 jgi|Araly1|922006|scaffold_103287.1 1146 0.0
Ahg473170 jgi|Araly1|473170|fgenesh2_kg.1__3124__AT1G29670.1 111 6e-24
> Ahg922006 jgi|Araly1|922006|scaffold_103287.1
Length=754
Score = 1146 bits (620), Expect = 0.0
Identities = 708/752 (94%), Gaps = 0/752 (0%)
Strand=Plus/Plus
Query 13 AAGAAAATAAAATTAAGGATGGCTTTGAGCGGCGGCGATGATCAGGTACCTCCTGGAGGT 72
||||||| ||||| ||||||| ||| ||||||| |||| |||||||| ||||||||||||
Sbjct 3 AAGAAAAGAAAATCAAGGATGTCTTCGAGCGGCAGCGAAGATCAGGTGCCTCCTGGAGGT 62
Query 73 CCGATGACAGTTTCAACACGTCTGATTGATGCCGGATCGACGATCATGCAGCGGCGATTA 132
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 CCGGTGACGGTTTCAACACGTCTGATTGATGCCGGATCGACGATCATGCAGCGGCGATTA 122
Query 133 CCGGTGAAGCAGATGAACACTCATGTCTCTACTTTTGCGATATATGGTGGTGACATGTCC 192
||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 123 CCGTTGAAGCAGATGAACACTCATGTCTCTACTTTTGCCATATATGGTTGTGACATGTCC 182
Query 193 CGGCTAATAGGGACTCACCACTATGTCCACCGCGTCAACGACGAGTTCCTTCAGTGTGCT 252
|||| ||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 183 CGGCAAATAGAGACTCACCACTACGTCCACCGCATCAACGACGAGTTCCTTCAGTGTGCT 242
Query 253 GTTTACGCCTCTGACCGCTCCGATGCACCTCTAATCGGAATTGAATATGTAATATCCGAC 312
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||
Sbjct 243 GTTTACGCCTCTGACCGTTCCGATGCACCTCTCATCGGAATTGAATATGTAATATCCCAC 302
Query 313 CGATTATATGAAACTTTGTCTGAGGATGAGCAAAAGCTTTGGCACTCTCATGCATATGAG 372
|||||||| |||||| ||||| | ||||||||||||||||||||||||||||| || |||
Sbjct 303 CGATTATACGAAACTCTGTCTCAAGATGAGCAAAAGCTTTGGCACTCTCATGCTTACGAG 362
Query 373 GTTAAGTCAGGCTCGTGGGCTTATCCACGATTGCCTGAGGTTGTGGCTGCTCCGGAGCTC 432
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 363 GTTAAGTCAGGCTCGTGGGCTTATCCACGATTGCCTGAGGTTATGGCTGCTCCGGAGCTC 422
Query 433 AAGAACATAGCCAAAACGTACGGAAAGTTTTGGTGCACCTGGCAGATAGACCGAGGTGAC 492
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 423 AAGAACATAGCCAAAACGTACGGAAAGTTTTGGTGCACTTGGCAGATAGACCGAGGTGAC 482
Query 493 AAGTTACCAATGGGTGCACCCGAACTAATGATGTCACCTCAGGGGGTGGGGCAAGGGGTA 552
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 483 AAGTTACCAATGGGTGCACCCGAACTTATGATGTCACCTCAGGGGGTGGGGCAAGGGGTA 542
Query 553 CTAAGGCCAGAGTTGGTGAAGAGAAGAGATGAGAAGTACAACATTTCGACAGATGATTTG 612
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 543 TTAAGGCCAGAGGTGGTGAAGAGAAGAGATGAGAAGTACAACATTTCGACAGATGAATTG 602
Query 613 AAACACACGAGAGCGGAGATTGCTGAACCGGAGTGGATCAATCCGATGGCTGACTACTGG 672
|| |||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 603 AAGCACAAGAGAGCGGAGATTGCTGAACCGGAGTGGATCAATCCAATGGCTGATTACTGG 662
Query 673 AAGCAACATGGTAAGTGTTTTGTACTCGATATTGCGACTGTCGAAATGAACCGTCACGCG 732
|||||||||||||||||||||||||||||| | | |||||| |||||||||||| | |||
Sbjct 663 AAGCAACATGGTAAGTGTTTTGTACTCGATGTCGTGACTGTTGAAATGAACCGTAATGCG 722
Query 733 CAATTCCCGTGAACAATGTCCTCTCATGGCTC 764
|||| |||||||||||||||||||| | ||||
Sbjct 723 CAATACCCGTGAACAATGTCCTCTCGTTGCTC 754
> Ahg473170 jgi|Araly1|473170|fgenesh2_kg.1__3124__AT1G29670.1
Length=1306
Score = 111 bits (60), Expect = 6e-24
Identities = 64/66 (97%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 788 TATAGAAATCGAATGTATATAGAATAATGTTTTACTCGATTTCAATTACGTCAAGAAAAT 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1306 TATAGAAATCGAATGTATATAGAATAATGTTTTACTCGATTTCAATTACGTCAAGGAAAT 1247
Query 848 CTTAAA 853
|||||
Sbjct 1246 ATTAAA 1241
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31603898193
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5