BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29690.1
Length=2238
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473172 jgi|Araly1|473172|fgenesh2_kg.1__3126__AT1G29690.1 3317 0.0
> Ahg473172 jgi|Araly1|473172|fgenesh2_kg.1__3126__AT1G29690.1
Length=2231
Score = 3317 bits (1796), Expect = 0.0
Identities = 2101/2247 (94%), Gaps = 25/2247 (1%)
Strand=Plus/Plus
Query 1 AACCTAAGAATCTTCTTGATATCACTCAG------AAAGaaaaaaa-acaataaaaacaa 53
||||||||||||||| ||||||||||||| ||| ||||||| | || ||||||||
Sbjct 1 AACCTAAGAATCTTCCTGATATCACTCAGAAAAAAAAAAAAAAAAAGAAAAAAAAAACAA 60
Query 54 taaaaTCTCAAACGCGGTTTCTACGATTTTTGTAGAGTCAAAACCAGCAATGGTGTTGGT 113
| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 61 TGAAATCTCAAACGCGGTTTCTACGATTATTGTATAGTCAAAACCAGCAATGGTGTTGGT 120
Query 114 GAGAGTCTaaaaaaaaTCGATCGAAAGCTCAAAAACTCCATCTTCTTTCCCCCAGGAACT 173
|||| || ||||||||||||||||||||| ||||||||||||| || ||||||||
Sbjct 121 AAGAGACT-----AAATCGATCGAAAGCTCAAAATCTCCATCTTCTTT-CCTCAGGAACT 174
Query 174 CACAAACCCTAGATGA-ATTGTTAATCATCAATCATCGATTTCAAGATTTAGTCTCGAAA 232
|||||||||||||| | ||||| ||||||||||||| ||||||||||||| |||| |||
Sbjct 175 CACAAACCCTAGATTAGTTTGTT-ATCATCAATCATCCATTTCAAGATTTAATCTC-AAA 232
Query 233 GGTTTTAttttttttGTGCTTGCGTCTTAAATGGAGAATCGTAAAGGAGGAAACTTTAGC 292
||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 233 GGTTTTA-TTTTTTTGT--TTGCGTCTTAAATGGAGAATCGTAAAGGAGGAAACTTTAGC 289
Query 293 GTACCTAGCTCCGAAGCTTTGACCACGACGCTTCGTAATGCGATCCAAGCTTTGGGTCGT 352
|| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 290 GTTCCTAGCTCCGAAGCTTTGACCACGACGCTCCGTAATGCGATCCAAGCTCTGGGTCGT 349
Query 353 GGTTTCGATGTTACATCTGATGTTCGGCTTCTTTATTGCAAAGGAGCTCCTGGGTCAAGA 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 GGTTTCGATGTTACATCTGATGTTCGGCTTCTTTATTGCAAAGGAGCTCCTGGGTCAAGA 409
Query 413 CTTGTTCGTATAGAAGAAGGACAAAACAGAGATCTTGAGTTGTCTCATGGGTTTCTTCTT 472
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 410 CTTGTTCGTATAGAAGAAGGACAAAACAGAGATCTTGAGTTGTCTGATGGGTATCTTCTT 469
Query 473 CCTAATGTCCCTGCTGATATTGACTGTTCACGCGGCA-ACAGTGGCACACAAAGAATCTC 531
|||||||| |||||||||||||| |||||||||||| | | |||||| || |||||| |
Sbjct 470 CCTAATGTTCCTGCTGATATTGAGTGTTCACGCGGCCGA-ATTGGCACTCAGAGAATCCC 528
Query 532 TGTTTGCAGCTTCCATGAGATGGCAGAAGAATTCAATGTGAGATCAGGTGTAAAAGGGAA 591
||| |||||||||||| ||||||||||| | ||||||| || |||||||||||| |||||
Sbjct 529 TGTCTGCAGCTTCCATCAGATGGCAGAATACTTCAATGAGATATCAGGTGTAAAGGGGAA 588
Query 592 CATACCACTCGGATGCTTTAACGCAATGTTCAATTACACGGGTTCTTGGCAAGTAGATGC 651
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 589 CATACCACTCGGATGTTTTAACGCAATGTTCAATTACACGGGTTCTTGGCAAGTTGATGC 648
Query 652 AGCATCCACTAAATCTCTTGCACTGGTTGGATATTTTATCCCGCTTTATGATGTCAAATT 711
||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 649 AGCATCCACAAAATCTCTTGCACTGGTTGGATTTTTTATCCCGCTTTATGAAGTCAAATT 708
Query 712 AGCAAAGCTTACATTGGTTTTGCACAATGAGATCAGACGTGCTGTTCCTTCCTCGTGGGA 771
| ||| |||| ||||| ||||||||||||||||||||| |||||||||||||| |||||
Sbjct 709 GGTAAATCTTAAATTGGATTTGCACAATGAGATCAGACGCGCTGTTCCTTCCTCATGGGA 768
Query 772 TCCTGCTTCCCTAGCTAGCTTTATTGAAAATTACGGCACTCATATTGTAACTTCGGTGAC 831
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 TCCCGCTTCCTTAGCTAGCTTTATTGAAAATTACGGCACTCATATTGTAACTTCGGTGAC 828
Query 832 CATTGGTGGAAGAGATGTAGTATACATCAGACAACATCAGTCTTCTCCTTTACCAGTATC 891
||||||||||||||| ||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 829 CATTGGTGGAAGAGACGTAGTTTACATTAGACAACATCAGTCTTCTCCTTTACCGGTATC 888
Query 892 TGAAATAGAAAACTATGTGAATGACATGATAAAGCACAGATTTCATGAAGCAGAGAGTCA 951
|||||| ||||||||||||||||| |||| ||||||| ||||||||||||||||||||
Sbjct 889 TGAAATTGAAAACTATGTGAATGAGATGACGGAGCACAGGTTTCATGAAGCAGAGAGTCA 948
Query 952 ATCTATTACCGGCCCCTTGAAATACAAAGACAAGGATATCACAGTAATATTTAGGCGAAG 1011
|||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||
Sbjct 949 ATCTATTACCGGCCCCTTAAAATACAAAGACAAGGATATTACAGTAACATTTAGGCGAAG 1008
Query 1012 AGGAGGCGACGATCTTGAGCAAAGCCATGCTCGTTGGGCTGAGACTGTACCCGCAGCTCC 1071
||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1009 AGGAGGCGATGATCTTGAGCAAAGCCATGCTCGATGGGCTGAGACAGTACCCGCAGCTCC 1068
Query 1072 AGACATTATCAACATGACTTTTACTCCTATTGTTTCTCTCCTTGAAGGTGTGCCTGGTTT 1131
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1069 AGACATTATCAACATGACTTTTACTCCTATTGTTTCTCTGCTCAAAGGTGTGCCTGGTTT 1128
Query 1132 ACGGCATTTGACTCGTGCTATCGAACTTTACTTGGAATATAAGCCTCCTATTGAAGATTT 1191
|| ||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1129 ACAACATCTGACTCGAGCTATCGATCTTTACTTGGAATATAAGCCTCCTATTGAAGATTT 1188
Query 1192 ACAATACTTCTTGGATTACCAAATAGCTCGAGCTTGGGCTCCCGAACAGAGTAACCTCCA 1251
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1189 ACAATATTTCTTGGATTTCCAAATAGCTCGAGCTTGGGCTCCCGAACAGAGTAACCTCCA 1248
Query 1252 ACGTAAAGAACCTGTGTGTTCTTCTCTTCAATTCAGCTTAATGGGTCCCAAACTATTCAT 1311
||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||
Sbjct 1249 ACGTAAAGAACCTGTGTGTTCTTCTCTCCAATTCAGCTTAATGGGTCCGAAACTGTTCAT 1308
Query 1312 CAGCGCTGATCAGGTAACTGTTGGGCGTAAGCCGGTCACAGGTCTCAGACTGAGCTTAGA 1371
||| |||||||||||||| ||||||||||| || |||||||||||||| |||||||||||
Sbjct 1309 CAGTGCTGATCAGGTAACGGTTGGGCGTAAACCAGTCACAGGTCTCAGGCTGAGCTTAGA 1368
Query 1372 AGGAAGCAAACAAAACCGTCTCTCTATCCATTTACAACACTTAGTCTCTCTCCCTAAAAT 1431
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1369 AGGAAGCAAACAAAACCGTCTCTCTATTCATTTACAACACTTAGTCTCTCTCCCCAAAAT 1428
Query 1432 CCTGCAGCCACATTGGGACTCTCACGTGCCAATAGGTGCACCGAAATGGCAAGGACCAGA 1491
| |||||||||| |||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1429 CATGCAGCCACACTGGGACTCTCACGTACCGATAGGTGCACCGAAATGGCAAGGACCAGA 1488
Query 1492 GGAGCAAGATAGCCGCTGGTTCGAGCCAATCAAATGGAAGAACTTCTCTCACGTAAGCAC 1551
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1489 GGAGCAAGATAGCCGCTGGTTTGAGCCAATTAAATGGAAGAACTTCTCTCACGTAAGCAC 1548
Query 1552 CTCACCTATCGAACACACAGAGACCCACATCGGCGATCTCTCCGGCGTTCACATTGTCAC 1611
||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1549 CTCGCCTATCGAACACACCGAGACCCACATCGGCGATCTCTCAGGCGTTCACATTGTCAC 1608
Query 1612 TGGAGCTCAGCTCGGGGTTTGGGATTTCGGATCAAAAAACGTTTTGCATTTGAAACTACT 1671
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1609 CGGAGCTCAGCTCGGGGTTTGGGATTTCGGATCAAAAAACGTTTTGCATTTGAAACTACT 1668
Query 1672 CTTCTCTAAAGTCCCCGGTTGTACAATAAGAAGGTCCGTCTGGGACCACACTCCCGTTGC 1731
|||||||||||||||||| |||||||||||| ||||||||||||||||||| || |||||
Sbjct 1669 CTTCTCTAAAGTCCCCGGATGTACAATAAGACGGTCCGTCTGGGACCACACACCGGTTGC 1728
Query 1732 TTCCTCAGGGAGACTGGAACCGGGAGGTCCATCTACATCAAGTTCGACCGAGGAAGTGTC 1791
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1729 TTCCTCAGGGAGACTGGAACCGGGAGGTCCATCTACATCGAGTTCGACCGAGGACGTGTC 1788
Query 1792 AGGGCAATCAGGAAAACTGGCCAAGATTGTGGATTCGTCAGAGATGTTAAAAGGACCACA 1851
|||||||||||| |||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct 1789 AGGGCAATCAGGGAAACTGGCCAAGATCGTGGATTCTTCAGAGATGTTGAAAGGACCACA 1848
Query 1852 GGATTTACCTGGACATTGGCTTGTCACTGGAGCAAAGCTAGGCGTTGAAAAGGGTAAGAT 1911
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1849 GGATTTGCCTGGACATTGGCTTGTCACTGGAGCAAAACTAGGCGTTGAAAAGGGTAAGAT 1908
Query 1912 TGTATTGCGTGTGAAGTATTCGTTGCTAAATTATTGAGAGATTTTAGATGAGTTCTTGTT 1971
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1909 TGTATTGCGTGTGAAGTATTCGTTGCTAAATTATTGAGAGATTT-AGATGAGTTCTTGTT 1967
Query 1972 TTTCCGGCGGCCGGGAAAGTTTTCCGTCAGCATTCTTTGCACAGCGAATCATTCTTGTAC 2031
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1968 TTTCCGGCGGCCGGGAAATTTTTCCGTCAGCATTCTTTGCACAGCGAATCATTCTTGTAC 2027
Query 2032 ATGTTTCGGTTGCTTATGGGAACCgtttggttctgttcggtttgacacgagtttggtttg 2091
||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||
Sbjct 2028 ATGTTTCGGTTGCTTATGGGAACCGTTTGGTTCGGTTCTGTTCGACACGAGTTTGGTTTG 2087
Query 2092 gttgatttttaattttggtccggtttggttttgtagacgattttATTAAATCAGAGCTGT 2151
||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 2088 GTTGATTTTAAATTTTTGTCCGGTTTGGTTTTGTAGACGATTTTATTAAATCAGATATGT 2147
Query 2152 AAATTTGTAGTGGGATATTCAACACATGGTCGATGTATGCCCGTTTCGTGACACGTTTCT 2211
||||| ||||| |||| | |||||||||||||||||| | || |||||| ||||||||||
Sbjct 2148 AAATT-GTAGTCGGAT-T-CAACACATGGTCGATGTACGGCCATTTCGTAACACGTTTCT 2204
Query 2212 ATGAAATATGCATGCCATGTATCATAT 2238
|||| ||||| ||||||||||||||||
Sbjct 2205 ATGAGATATGAATGCCATGTATCATAT 2231
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84255621940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5