BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29700.1
Length=1356
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473173 jgi|Araly1|473173|fgenesh2_kg.1__3127__AT1G29700.1 1916 0.0
> Ahg473173 jgi|Araly1|473173|fgenesh2_kg.1__3127__AT1G29700.1
Length=1313
Score = 1916 bits (1037), Expect = 0.0
Identities = 1232/1321 (93%), Gaps = 33/1321 (2%)
Strand=Plus/Plus
Query 42 CAAACAGTCTCTCTTCAACTCTAAAATCAGGTGGCAAAACAAAATCAATGGCTCTAGTGG 101
||||||| |||| || |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 17 CAAACAG--TCTC-TCGACTCTAAAATCAGGTGGCAAAACAAAATCAATGGCTCTGGTGG 73
Query 102 TGTCAGGTGGCAAAGCAGCCATGATGCCGCTTCATGCCAATTCTCTTCCTCTAAGTATCA 161
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 74 TGTCAGGTGGCAAAGCAGCCACGATGCCGCTTCATGCCAATGCTCTTCCTCTAAGTATCA 133
Query 162 ACACCAAATCAAGAGTA-CTAAGTGCATCAGCATTTCCACTATTCTCGTCCACTCCTCAC 220
|||||||| |||||| | ||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 134 ACACCAAAGCAAGAG-ACCTAAGCGCATCTGCATTTCCGCTATTCTCGTCCACTCCTCAC 192
Query 221 CTCCCTTCCAGATCCCTCTCCATCCGCCTCTCGCCGAATGTTTCCCGGTCTCTCACTGTG 280
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 193 CTCCCTTCCAGATCCCTCTCCATCCGCCTCTCGCCGAATGTTTCCCGCTCTCTCACTGTG 252
Query 281 GTATCTTCTGTTTTGTCAGAGGACAGAGCTACTAACGTTAGTGGCTCTGGGACAGATGCA 340
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 253 GTATCTTCTGTATTGTCAGAGGACAGAGCTACCGGGGTTAGTGGCTCTGGGACAGATGCA 312
Query 341 TTCAAGCTGACTTACTTGGAGGGCAATAGCTGGCTATGGGAAACAGCTGGACTGAAAATC 400
||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||
Sbjct 313 TTCAAGCTGACTTACTTGGAGGGCAATAGCTGGCTATGGGAGACAGGTGGATTGAAAATC 372
Query 401 CTAGTTGATCCGATTCTTGTGGGTAATTTGGACTTTGGAATCCCATGGCTTTATGATGCT 460
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 373 CTAGTTGATCCGATTCTCGTGGGTAATTTGGACTTTGGAATCCCATGGCTTTATGATGCT 432
Query 461 GCCAAGAGATATTTGAAGGCCTTCAAGCTTGATGATCTCCCTGAAGTTGATTGCCTTCTC 520
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 433 GCCAAGAGATATTTGAAGGGCTTCAAGCTTGATGATCTCCCTGAAGTTGATTGCCTGCTC 492
Query 521 ATAACTCAAAGCCTTGATGATCATTGTCATTTGAATACCCTTAGGCCACTTTCCGAGAAA 580
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 493 ATAACTCAAAGCCTTGATGATCATTGTCATTTGAATACCCTTAGGCCACTTTCTGAGAAA 552
Query 581 TCTCCAGGCATAAAGGTTATAGCAACCCCAAATGCTAAGCCTTTGCTAGATCCTCTTTTT 640
|||||||||||||||||||| ||||| |||||||| ||||||||||| ||||||||||||
Sbjct 553 TCTCCAGGCATAAAGGTTATTGCAACTCCAAATGCAAAGCCTTTGCTCGATCCTCTTTTT 612
Query 641 AGTAACGTCACTTATCTGGAACCTGGAGATAGCTTTGAGCTAAATGCAAGAAACGGTTCT 700
|| |||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 613 AGAAACGTCACCTATCTGGAACCTGGAGATAGCTATGAGCTAAATGGAAGAAACGGTTCT 672
Query 701 AAGGTTCGAGTTAAAGCCACAGCTGGACCTGTCCTTGGTCCACCGTGGCAACGCCCTGAA 760
||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct 673 AAGGTTCGAGTTAAAGCCACAGCAGGACCTGTCCTCGGTCCACCATGGCAACGCCCTGAA 732
Query 761 AACGGGTATCTCCTTGTATCCCCTGAAGATCAGATATCTCTCTACTATGAACCGCATTGT 820
||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||
Sbjct 733 AACGGGTATCTCCTTGTATCCTCTGAAGATCAGATATCTCTCTACTACGAACCACATTGT 792
Query 821 GTATGCAACATGGAACTTCTGAAGAATGAAAGAGCCGACATTGTAATCACACCGGTCATC 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 GTATGCAACATGGAACTTCTGAAGAATGAAAGAGCCGACATTGTAATCACACCGGTCATC 852
Query 881 AAACAACTTCTCCCACGATTTACTCTTGTTTCTGGTCAAGAAGACGCTGTCCAGCTTGCC 940
|||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||
Sbjct 853 AAACAACTTCTCCCACGATTTACTCTTGTTTCTGGTCAAGAAGACGCTGTCCTGATCGCC 912
Query 941 AAACTCTTGAAAGCCAAGTTTGTTGTGCCGATGCAAAATGGCGAGCTTGAAGCAAAGGGA 1000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 913 AAACTCTTGAAAGCCAAGTTTGTTGTGCCGATGCAAAATGGCGAGCTTGAAGCAAAGGGA 972
Query 1001 CTTTTAGCAAGCCTAGTAAAGAAAGAAGGAACTATTGAATCATTTAAGGAATTATTGTTA 1060
|||||||| ||| || |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 973 CTTTTAGCCAGCATAATAAAGAAAGAAGGAACTATTGAATCATTTAAGGAGTTATTGTTA 1032
Query 1061 AAAGAGCTCCCAGAAGCTCAAGTGTTGGAGCCTATAGCAGGTATACCGCTAGAGATCTTG 1120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1033 AAAGAGCTCCCAGAAGCTCAAGTATTGGAGCCTATAGCAGGTATACCGCTAGAGATCTTG 1092
Query 1121 GTTCCATCTTCAGACATTTAGAAAGTAAACTGTACATGAGAGTATACACATATGTAAATA 1180
| |||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||
Sbjct 1093 GCTCCATCTTCAGACATTTAGAAAGTAAACGGTACATGAGAGGATACACAT--GTAAATA 1150
Query 1181 TACACATGTGAAATGAAACTTTTTAGAGGAGATGTAATAGTGGAGAAGAGGAGAGATATT 1240
| ||||||||||||||| ||||||||| || | |||| ||||||||||||||||||| ||
Sbjct 1151 TGCACATGTGAAATGAAGCTTTTTAGATGAAAGGTAACAGTGGAGAAGAGGAGAGAT-TT 1209
Query 1241 GGAGGTATGACTAAGGACGGATATTTTGTATATGTTGATCTATTTAAAGATTATTTCATT 1300
| | | | || | ||| ||||| ||||||||||||||||||||||||||
Sbjct 1210 -----T--G-----G-A-GG-T-TTT-GTATACGTTGATCTATTTAAAGATTATTTCATA 1252
Query 1301 TAAGG---T--TG---GAATAATTAATGTATCATAATAATAAATTAGTGACATGTTCCAG 1352
||||| | | ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1253 TAAGGAGGTACTTTTAGAATAATTAATGTATCATACTAATAAATTAGTGACATGTTCCAG 1312
Query 1353 T 1353
|
Sbjct 1313 T 1313
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50741602527
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5