BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29710.1
Length=1428
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922010 jgi|Araly1|922010|scaffold_103291.1 1923 0.0
> Ahg922010 jgi|Araly1|922010|scaffold_103291.1
Length=1456
Score = 1923 bits (1041), Expect = 0.0
Identities = 1302/1429 (91%), Gaps = 14/1429 (1%)
Strand=Plus/Plus
Query 1 ATGGTGCGATTGTGGTGTGGGAAGCTCAGACTTTGGAAACCCTATTTAGCGTTAGCTACA 60
|||||||||||||||||||| ||||||| ||||| |||||||| |||||||||||| |||
Sbjct 21 ATGGTGCGATTGTGGTGTGGAAAGCTCAAACTTTCGAAACCCTTTTTAGCGTTAGCAACA 80
Query 61 CAGAGTAGAAACAGCTGGTTCTGTTCGGGTGGTGGAGCTCCCTCTCATCATCTTCACATC 120
|||||||||| | |||||||| |||| | ||||||||||||||||||| | | ||| |
Sbjct 81 CAGAGTAGAAGCCGCTGGTTCAGTTC--G-CGTGGAGCTCCCTCTCATCAGCATGACAGC 137
Query 121 CTCAAAAAGTATGGCAGCTCAGAGATCACAGAGATGATCAATCGG-TATAAGCGAAACGT 179
|||| | | ||| | | | ||| |||||||| ||||||||| | | ||||| || |
Sbjct 138 CTCACATACTAT-G--G--C--AGA--ACAGAGATAATCAATCGGCT-TGAGCGATACAT 187
Query 180 AGCCGGACACACATTGACGCAGAATTCAATGGTAGGTCAGTACAAAACAACAGTTTCTCC 239
| ||| || ||||| |||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 188 AACCGAACGCACATGGACGCAGAATCCAATCGTAGGTCAGTACAAAACAACAGTTTCTCC 247
Query 240 AAGTGTTGCTCAAAATGTTACTATTGAGACATTTGATTCGTTATGTATTCAAGGGAATTG 299
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 248 AAGTGTTGCTCAAAATGTTACTATTGAGACATTTGATTCGTTATGTAATCAAGGGAATTG 307
Query 300 GAGAGAAGCTGTAGAGGTTTTAGATTACTTGGAGAATAAGGGTTATGCTATGGATTTGAT 359
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 308 GAGAGAAGCTGTAGAGGTTTTAGATTACTTGGAGAATAAGGGTTTTGCTATGGATTTGAT 367
Query 360 TAGACTTTTAGGGTTAGCTAAACTATGTGGTAAACCAGAAGCTTTGGAAGCAGCTAGAGT 419
|||||| ||| ||||||||||| |||| ||| ||||||||||||||||||||||||||||
Sbjct 368 TAGACTCTTAAGGTTAGCTAAAATATGCGGTGAACCAGAAGCTTTGGAAGCAGCTAGAGT 427
Query 420 TGTTCATGAGTGTATCATTGCTCTGGTTTCTCCTTGTGATGTTGGCGCTCGAAACGCGAT 479
||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 428 TGTTCATGAGTGTATTATTGCTCTGGTTTCTCCTTGTGATGTTGGTTCTCGTAACGCGAT 487
Query 480 TATCGAGATGTATTCTGGTTGTTGTTCTGTTGATGATGCGCTCAAGGTGTTCGAAGAAAT 539
|||| ||||||||||| |||| | ||||||||| |||||||||| |||||||| |||||
Sbjct 488 TATCAAGATGTATTCTTGTTGCGGATCTGTTGATCATGCGCTCAAAGTGTTCGACGAAAT 547
Query 540 GCCTGAGTGGAATTCGGGGACTTTGTGTGTTATGATGAGGTGTTTTGTTAACAACGGATA 599
|||| || ||||||||| ||||| |||||||||||||| ||||||||||||||| ||||
Sbjct 548 GCCTAAGAGGAATTCGGAGACTTGGTGTGTTATGATGACGTGTTTTGTTAACAATGGATT 607
Query 600 TGGTGAAGAAGCAATTGATTTGTTTACTCGTTTTAAAGAAGAAGGGAACAAACCAAACGG 659
||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 608 TGGTGAAGAAGCAATCAATTTGTTTACTCGTTTTAAAGAAGAAGGGAACAAACCAGACGG 667
Query 660 AGAGATATTCAACCAAGTGTTTTCTACATGTACTTTGACAGGAGATGTTAAGGAAGGGTC 719
||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||| ||
Sbjct 668 AGAGATATTCAACCAAGTGTTATCTACGTGTACTTTGACAGGAGATCTTAAGGAAGGATC 727
Query 720 TCTGCAATTTCAAGCTATGTACAGAGAATATGGAATCGTACCTTCAATGGAACACTATCA 779
||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| ||
Sbjct 728 ACTGCAATTTGAAGCTATGAACAGAGAATATGGAATCATACCTTCAATGGAACACTACCA 787
Query 780 TAGTGTTACCAAAATGTTGGCAACATCTGGTCACTTGGATGAGGCACTGAACTTTGTTGA 839
|||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||||||
Sbjct 788 TAGTGTTACCAAGATGTTTGCAACATCTGGTCACTTGGATGAAGCACTAAACTTTGTTGA 847
Query 840 GAGAATGCCGATGGAACCGAGTGTTGACGTGTGGGAAACACTAATGAATCTTTCTCGGGT 899
||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct 848 GAGAATGCCGATGGAACCGAGTGTTGATGTTTGGGAAACACTAATGAATCTTTCTCGCGT 907
Query 900 TCATGGAGATGTAGAGCTTGGAGATAGATGTGCTGAGTTGGTTGAGAAGTTAGATGCCAC 959
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||
Sbjct 908 TCATGGAGATGTAGAGCTTGGAGATAGATGTGCTGAGTTAGTTGAGAAGCTAGATGCTAC 967
Query 960 AAGATTAGACAAAGTGTCAAGTGCAGGTCTTGTAGCAACCAAAGCATCAGACTTTGTGAA 1019
|||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 968 AAGATTGGACAAAGTGTCAAGTGCAGGTCTTGTAGTAACCAAAGCATCAGACAATGTGAA 1027
Query 1020 GAAGGAACCAAGCACTCGGTCTGAACCATATTTTTATTCTACTTTTAGACCGGTAGATTC 1079
||||||||| |||| ||||||||||||||||| | || || |||||| ||||||||| |
Sbjct 1028 GAAGGAACCGAGCAATCGGTCTGAACCATATTGGTGTTATAATTTTAGGCCGGTAGATAC 1087
Query 1080 TTCACATCCACAAATGAATATCATTTACGAGACACTAATGAGTTTGAGGTCACAACTGAA 1139
||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||
Sbjct 1088 TTCACATCCACAAATGAATATTATTTACGAGACACTAATGAGCCTGAGGTCACAAATGAA 1147
Query 1140 AGAAATGGGTTATGTTCCTGACACTAGGTATTATCGTAGTTTAATCATGGCGATGGAGAA 1199
||||||||||||||||||||||||||||| |||||||| ||| ||||||| ||||| |||
Sbjct 1148 AGAAATGGGTTATGTTCCTGACACTAGGTTTTATCGTACTTTGATCATGGTGATGGGGAA 1207
Query 1200 TAAAGAACAGATTTTTGGTTACAGAGAGGAAATTGCAGTTGTTGAAAGTCTTCTTAAGTC 1259
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1208 TAAAGAACAGGTTTTTGGTTACAGAGAGGAAATCGCAGTTGTTGAAAGTCTTCTTAAGTC 1267
Query 1260 AAAGCCTCGATCTGCAATCACTCTGTTAACTAATATACGCATTGTTGGCGATTGCCATGA 1319
||||||||||||| ||||||||||| |||||||| | || |||||||| |||||||| |
Sbjct 1268 AAAGCCTCGATCTTCAATCACTCTGATAACTAATGTTCGTATTGTTGGGGATTGCCACAA 1327
Query 1320 TATGATGAAGTTGATGTCAGTCATAACTGGCAGAGATATGATTAAGCGAGATGCAAAGAT 1379
||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||
Sbjct 1328 TATGATGAAGTTGATGTCAGTCATAACTGGCAGAGATCTGTTTAAGCGAGATGCACAGAG 1387
Query 1380 ATACCACTTGTTCAAAAATGGCGTCTGCCGGTGCAACAATCTTTGGTGA 1428
||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1388 ATACCACTTGTTCAAAAATGGCGTCTGCCGGTGCAACGATCGCTGGTGA 1436
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53402523490
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5