BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29715.1
Length=2313
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912777 jgi|Araly1|912777|Al_scaffold_0001_3031 917 0.0
Ahg912776 jgi|Araly1|912776|Al_scaffold_0001_3030 510 1e-143
> Ahg912777 jgi|Araly1|912777|Al_scaffold_0001_3031
Length=1839
Score = 917 bits (496), Expect = 0.0
Identities = 585/628 (93%), Gaps = 5/628 (1%)
Strand=Plus/Plus
Query 330 AGTGGGCTTCTTCCATGCGCTGGTCCAATAAGA-TGCACTAGTTATCAGCGATTTCTACA 388
|||||||||||||||||||||||| |||||| | |||||| | ||| |||||||||||
Sbjct 592 AGTGGGCTTCTTCCATGCGCTGGTTCAATAA-ACTGCACTCG---TCATCGATTTCTACA 647
Query 389 TATAAATTGTGGTGGATACAACATAGTTATCACAAACTCTTCTTATAAAACTACTTATCA 448
|||||||||||||||| |||| |||||||||||||||||||||||| |||| ||||||||
Sbjct 648 TATAAATTGTGGTGGAGACAAGATAGTTATCACAAACTCTTCTTATGAAACCACTTATCA 707
Query 449 ACCTGATAACTACAAATTCAACGCGGCAACAAATCAGCGTTACGGAAACTGGGGAATCAG 508
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 708 ACCTGATAACTACAAATTCAACGCGGCAACAAATCAGCGTTTTGGAAACTGGGGAATCAG 767
Query 509 TAACACTGGTGTATTCACGGATTATCTTAGTGAGGAGGAGCAGTTCATCTTTTCAACTAG 568
||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 768 TAACACTGGTGCATTCACGGATTATCTTAGTGAGAAGGAGCAGCTCATCTTTTCAACTAG 827
Query 569 TTTAACTCTACCTGTAAATGCTCCTGATATTTATAAGACTGCGCGTCGATCTGCTCTCTC 628
|||| | ||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 TTTACCACTATCTGGAAATGCTCCTGATATTTATAAGACTGCGCGTCGATCTGCTCTCTC 887
Query 629 TTTAGCTTATTATGCGTTTTGCTTGGAAAATGGACCTTACAATGTGAAACTCCATTTCAT 688
||||||||||||||| ||||||||| |||||||| |||||||||||||||| ||||| ||
Sbjct 888 TTTAGCTTATTATGCATTTTGCTTGCAAAATGGAGCTTACAATGTGAAACTACATTTTAT 947
Query 689 GGAGATTCAGTTTTCTGACCAAGAACTATACAGCCGTCTCGGCAGACGCATATTTGATGT 748
|| ||||||||||||||| ||||||||||| |||||||| || | |||||||||||||||
Sbjct 948 GGGGATTCAGTTTTCTGATCAAGAACTATATAGCCGTCTTGGAAAACGCATATTTGATGT 1007
Query 749 CTATGTTCAGGGAGAATTGTTCTTGAGAGATTTTAACATCAAAGAAGAGGCTAATGGGAC 808
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1008 CTATGTTCAGGGAGAATTGTTCTTGAGAGATTTTAACATCAAAGAATTGGCTAATGGGAC 1067
Query 809 ACTAAAGCCTCTTGTGAGAGAAATAAAAGCTGTTAATGTGAGTGATCATACGTTAGAGAT 868
||||||||||||||| | ||| |||||| ||||||||||||| |||||||||||||||||
Sbjct 1068 ACTAAAGCCTCTTGTTAAAGAGATAAAATCTGTTAATGTGAGCGATCATACGTTAGAGAT 1127
Query 869 TCGTTTTTATTGGGCGGGGAAAGGGACAACTCTCATTCCCAAAAGAGGAAATTATGGTCC 928
||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1128 TCGGTTGTATTGGGCGGGGAAAGGGACAACTCTCATTCCTAAAAGAGGAAATTATGGTCC 1187
Query 929 TCTTATCTCTGCAATCTCTTTGTGTCAC 956
|||||||||||||||||| |||||||||
Sbjct 1188 TCTTATCTCTGCAATCTCCTTGTGTCAC 1215
Score = 597 bits (323), Expect = 1e-169
Identities = 381/409 (93%), Gaps = 3/409 (1%)
Strand=Plus/Plus
Query 1448 GGAAAAATCCCCCTGAAACTGGACTGGGCAGCAAGACAAAAAATCTGTGTGGGAATCTCA 1507
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 1378 GGAAAAAGCCCCCTGAAACTGGACTGGGAAGCAAGACAAAAAATCTGTGTGGGAATCGCA 1437
Query 1508 AGAGGACTTGAATTCCTCCACGAATGATCAATGATCAGGATGGTTCATCGTGACATAAAA 1567
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 1438 AGAGGACTTGAATTCCTCCACGAAGGATCAATGATCAGGATGGTTCACCGTGACATAAAA 1497
Query 1568 ACCACTAATGTGCTTCTAGACACTGACCTTAATGCAAAGATATCTGACTTTGGATTGGCT 1627
|| ||||| |||||||||||| |||| |||||||||||||||| |||||||||||||||
Sbjct 1498 ACAACTAACGTGCTTCTAGACGTTGACTTTAATGCAAAGATATCGGACTTTGGATTGGCT 1557
Query 1628 AGGCTCCATGAAGCAGAACACACTCACATTAGCACTAAAGTGGCAGGAACCACGGATATA 1687
||||||||||||| ||||||||||||||||||||| ||||| ||||||| | ||||||||
Sbjct 1558 AGGCTCCATGAAGAAGAACACACTCACATTAGCACAAAAGTTGCAGGAA-C-CGGATATA 1615
Query 1688 TGGCTCCCGAATATGCATTATGGGGTCAACTAACAGAGAAAGCAGACGTGTACAGCTTCA 1747
||||||| |||||||| |||||||||||||| |||||||||||||| |||||||||||
Sbjct 1616 TGGCTCCAGAATATGCGTTATGGGGTCAACTGACAGAGAAAGCAGATGTGTACAGCTTTG 1675
Query 1748 GAGTTGTGGCAATGGAAATTGTTAGTGGAAAGAGTAATACGAAACAGCAGGGAAGTGCTG 1807
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 1676 GAGTTGTGGCAATGGAAATTGTTAGTGGAAAGAGTAATATGAAACAACAGGGAAGTGCTG 1735
Query 1808 AAAACGTCTCGCTTATCAATTGAGGCGCTGACACTGCAACAGAAAGGGG 1856
| ||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1736 ATCACGTCTCGCTTATCAATTG-GGCGCTAACACTGCAACAGAAAGGGG 1783
Score = 206 bits (111), Expect = 8e-52
Identities = 115/117 (98%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1116 TTGAGAGCCCAGGGTCTGCAAACGGTTTGGTTTACTTGGAAGCGACTCCAAGCTGCAACA 1175
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1216 TTGAGAGCCCAGGGTCTGCAAACGGTTTGGTTTACTTGGAGGCGACTCCAAGCTGCAACA 1275
Query 1176 AACAATTTTGCTCAAACCAACAAACTTGGAGAAGGAGGTTTTGGATCCGTATTCAAA 1232
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1276 AACAATTTTGCTCAAAGCAACAAACTTGGAGAAGGAGGTTTTGGATCCGTATTCAAA 1332
> Ahg912776 jgi|Araly1|912776|Al_scaffold_0001_3030
Length=312
Score = 510 bits (276), Expect = 1e-143
Identities = 300/312 (96%), Gaps = 0/312 (0%)
Strand=Plus/Plus
Query 1883 ATGATCAAAGTTGCTCTCCTTTGCACAAACTCATCTCCTTCTTTAAGACCAATAATGTCA 1942
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 ATGATCAAAGTTTCTCTCCTTTGCACAAACTCATCTCCTTCTTTAAGACCAACAATGTCA 60
Query 1943 GAGGCCGTGCAAATGCTTGAGGGAGAGATCGAAGTAACACAGGATTTTTCTGATCCTGCT 2002
|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
Sbjct 61 GAGGCCGTGCAAATGCTTGAGGGAGAGATCGAGGTAACACAGGTTTTTTCTGATCCTGAT 120
Query 2003 ATATATGGACACAACTGGAGCATCTTAAAGCGGAGGGACATTGAAACACATGGAATCTCA 2062
|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 121 TTATATGGACACAACTGGAGCATCTCAAAGCGGAGGGACATTGAAACACATGGTATCTCA 180
Query 2063 AGCACGTCTGATGTGACCGATCAAACAACAACGACAATGCGATCCTCCTTCTCGGGTTAT 2122
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 AGCACGTCTGATGTGACTGATCAAACAACAACGACAATGCGATCCTCCTTTTCGGGTTAT 240
Query 2123 GATCTCTACCCGTTATACCCTGAATCCATGATCCTAAACTCCACAGTAGAGTTTTCTTCC 2182
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 241 GATCTCTACCCGTTATACCCTGAATCCATGATCTTAAACTCCACAGTAGAGTTTTCTTCC 300
Query 2183 TCGTCACTGTAA 2194
|||||| |||||
Sbjct 301 TCGTCATTGTAA 312
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87112390315
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5