BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29730.1
Length=3056
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473176 jgi|Araly1|473176|fgenesh2_kg.1__3130__AT1G29740.1 1147 0.0
Ahg912778 jgi|Araly1|912778|Al_scaffold_0001_3032 268 1e-70
> Ahg473176 jgi|Araly1|473176|fgenesh2_kg.1__3130__AT1G29740.1
Length=2727
Score = 1147 bits (621), Expect = 0.0
Identities = 976/1147 (85%), Gaps = 25/1147 (2%)
Strand=Plus/Plus
Query 1 ATGTCTGCAGCTTACAATCTCATGATTAAGTCGAAAAGTTGCCTTTTTAGCTCTTCTATT 60
||||||| ||||||||| |||||||| | |||| |||| ||||||||||||| | ||
Sbjct 1 ATGTCTGTAGCTTACAAGCTCATGATCATGTCGCAAAGCCGCCTTTTTAGCTC-TGTA-- 57
Query 61 CTCTTTGTTGTTACACTTATCTACTTATTATGTACTGTATCTGCTTCTCCTTCTCTGCAC 120
|||| |||| |||| ||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 58 CTCTCTGTTCTTACTCTTATCTACTTGGTCTGTACTGTATCTGCTTCTCCTTCTCTGCAC 117
Query 121 CCAGATGAAGTGGAAGCGCTGAAGGATAT--CACTGAAACATTGGGTGTGAAGCACTTGA 178
|||||||||||||||||||| || ||||| || ||| || |||| |||||| |||||||
Sbjct 118 CCAGATGAAGTGGAAGCGCTTAAAGATATTGCATTGACAC-TTGG-TGTGAAACACTTGA 175
Query 179 ACCTAAGTGAAGATCCATGTCTCACAAAGACTCTAGTGATATCTCAAGGTGTTCTCAAGG 238
|||||||||||||||| ||||||||||||||||| || ||| |||||| |||||||||||
Sbjct 176 ACCTAAGTGAAGATCCGTGTCTCACAAAGACTCTGGTTATAACTCAAGATGTTCTCAAGG 235
Query 239 AAGGACAGAACAGCACAATCAGATGTGACTGTC-ATTTCAATAACTACAGCACTTGTCAT 297
||||||| ||||||||||||| ||||||||||| ||| ||||||| ||| ||||||||||
Sbjct 236 AAGGACAAAACAGCACAATCAAATGTGACTGTCGATT-CAATAACAACAACACTTGTCAT 294
Query 298 ATCAAACACTTTGTCCTCCAGAAATTCAATCTTCCAGGTAGACTTCCTCCA-A-TGCTGT 355
|| | |||||||||||| ||| ||||| |||||| ||||||||||| || | | | |
Sbjct 295 ATTACACACTTTGTCCTTAAGACATTCAGTCTTCCCGGTAGACTTCCAACAGAATT-T-T 352
Query 356 AC-AAGTTTCGGCATCTTGAATCGATTGACTTATACAATAATTACCTTTATGGCTCAATT 414
| ||| ||||| ||||||||| |||||||| | | |||||| |||||||||||||||
Sbjct 353 -CGAAGCTTCGGTATCTTGAATTTATTGACTTGTGCCGTAATTATCTTTATGGCTCAATT 411
Query 415 CCTATGGAATGGGCCTCACTGCCTTACCTCAAATCTATCTCTGTCTGTGCAAACCGCTTA 474
||||||||||||||||||||||||||||| |||||||||||||| || || || ||||||
Sbjct 412 CCTATGGAATGGGCCTCACTGCCTTACCTAAAATCTATCTCTGTTTGCGCGAATCGCTTA 471
Query 475 TCAGGAGACATTCCCAAAGG-ATTGGGGAAGTTTATTAACCTCACCCTTTTAGTTCTTGA 533
|||||||||||||| ||||| ||| |||||||||||||||||||| | |||||||||||
Sbjct 472 TCAGGAGACATTCC-AAAGGGATTAGGGAAGTTTATTAACCTCACTCAATTAGTTCTTGA 530
Query 534 AGCCAATCAGTTTTCGGGAACTATTCCTAAGGAACTAGGGAACCTAGTGAATCTACAAGG 593
||||||||| || || ||||| || || ||||||||||||||| | || |||||| ||||
Sbjct 531 AGCCAATCAATTCTCTGGAACAATCCCAAAGGAACTAGGGAACTTGGTTAATCTAGAAGG 590
Query 594 ACTAGGACTCTCTTCCAACCAACTTGTCGGAGGCCTCCCCAAGACATTAGCAAAACTAAC 653
| ||| ||| ||||||||| |||| || ||||| | |||||||||||||||| |||||
Sbjct 591 ATTAGCACTTTCTTCCAACGAACTAGTTGGAGGTGTACCCAAGACATTAGCAAGACTAAA 650
Query 654 AAAGCTAACTAATCTCC-ATTTAAGTGATAATCGCCTGAACGGATCGATTCCAGAGTTTA 712
||| || |||||||| | ||| | | || |||||||| || ||||| || || |||||||
Sbjct 651 AAATCTGACTAATCTACGATTCA-GCGACAATCGCCTTAATGGATCCATCCCTGAGTTTA 709
Query 713 TTGGGAAGTTACCAAAACTTCAAAGATTAGAACTCTATGCGAGTGGCCTTAGAGGACCTA 772
| ||||| ||| ||||||||||||||||||| || || ||||||||||| | | |||||
Sbjct 710 TCGGGAACTTATCAAAACTTCAAAGATTAGAGCTTTACGCGAGTGGCCTAACCGAACCTA 769
Query 773 TTCCAGACTCCATTTTTCATCTGGAGAATTTGATCGACGTGAGAATCAGTGACACGGTTG 832
||||||| ||||| |||| ||| |||||||| || ||| |||| ||||| ||||| ||
Sbjct 770 TTCCAGAGTCCATATTTCGTCTAGAGAATTTAATTGACCTGAGGATCAGCGACACAACTG 829
Query 833 CAGGATTGGGAC-ATGTTCCTCAGATAACTAGCACGAGCCTGAAATATTTGGTTTTGAGA 891
||| |||||||| | ||||||| |||||||||| ||||||||||| ||||||| | |||
Sbjct 830 CAGCATTGGGACTA-GTTCCTCTTATAACTAGCAAGAGCCTGAAATTTTTGGTTCTAAGA 888
Query 892 AACATAAACTTATCTGGACCAATTCCAACCAGTATCTGGGATCTGCCCAGTTTAATGACT 951
||||| |||||| |||||||| ||||||||| |||||||||| |||| | | |||||
Sbjct 889 AACATGAACTTAAGAGGACCAATCCCAACCAGTCTCTGGGATCTTCCCAATCTCATGACG 948
Query 952 CTGGATCTTTCCTTTAATAGGCTGACTGGAGAAATACCAGCATATGCAACTGCCCCAAAA 1011
|| |||||||| |||||||| ||||||||||| ||||||||| |||||| ||| ||||||
Sbjct 949 CTCGATCTTTCTTTTAATAGACTGACTGGAGAGATACCAGCAGATGCAAGTGCGCCAAAA 1008
Query 1012 TACACATATTTAGCTGGAAACATGTTGTCTGGAAAGGTTGAAACAGGAGCTTTCCTTACT 1071
|| |||||||| |||||||| |||||||| ||||| |||||| ||||| ||||||||||
Sbjct 1009 TATACATATTTGGCTGGAAATATGTTGTCAGGAAAAGTTGAATCAGGACCTTTCCTTACA 1068
Query 1072 GCAAGCACAAATATTGATCTTTCCTATAATAA-TTTCACGTGGTCTCCAATG-TGCAAAG 1129
|||||||| |||||||||||||| |||||||| ||| || |||||||||| | |||||||
Sbjct 1069 GCAAGCACCAATATTGATCTTTCTTATAATAACTTT-ACATGGTCTCCAA-GCTGCAAAG 1126
Query 1130 AGAGGAA 1136
|||||||
Sbjct 1127 AGAGGAA 1133
Score = 1090 bits (590), Expect = 0.0
Identities = 728/794 (92%), Gaps = 11/794 (1%)
Strand=Plus/Plus
Query 1875 AGGTTCCTTCAGTTTGAGGCAACTAAAAGTCGCGACCAACGATTTTGATCCCTTAAACAA 1934
|||||||||||||||||||||||||||||| ||||| | |||||| |||| | ||| ||
Sbjct 1941 AGGTTCCTTCAGTTTGAGGCAACTAAAAGTTGCGACTGATGATTTTAATCCGTCAAATAA 2000
Query 1935 GATTGGAGAAGGCGGCTTTGGATCTGTTTATAAGGGGCGATTACCAGATGGAACATTGAT 1994
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 2001 GATTGGAGAAGGCGGCTTCGGATCTGTTTATAAGGGGAGATTACCAGATGGAACATTGAT 2060
Query 1995 TGCGGTAAAGAAGCTATCTTCCAAATCACATCAAGGTAACAAAGAGTTTGTAAACGAGAT 2054
||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 2061 TGCGGTAAAGAAGTTATCTTCCAAATCCCATCAAGGTAACAAAGAGTTCGTAAACGAGAT 2120
Query 2055 CGGTATGATCGCTTGCCTGCAGCACCCGAACCTTGTGAAGCTTTATGGATGCTGTGTTGA 2114
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 2121 AGGTATGATCGCTTGCCTGCAGCACCCGAACCTTGTAAAACTTTATGGATGCTGTGTTGA 2180
Query 2115 GAAAAACCAGCTGCTTCTTGTCTATGAGTACTTGGAGAACAATTGTCTTTCTGATGCATT 2174
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 2181 AAAAAACCAGCTGCTTCTTGTCTATGAGTACTTGGAGAACAATTGTCTTGCCGATGCATT 2240
Query 2175 ATTTGCAGGAAGAAGCT-GTCTCAAACTAGAATGGGGAACAAGACACAAAATATGCTTGG 2233
| || | |||||||| | |||| |||||||| ||| ||||||||||||||||||||||||
Sbjct 2241 A-TT-C-GGAAGAAG-TGGTCTGAAACTAGACTGGAGAACAAGACACAAAATATGCTTGG 2296
Query 2234 GAATCGCGAGAGGGCTTGCTTTCCTCCATGAAGATTCAGCAGTTAAGATCATTCACCGAG 2293
|||| || ||||||||||||||||| |||||||||||||| ||||||||||| || |||
Sbjct 2297 GAATAGCAAGAGGGCTTGCTTTCCTTCATGAAGATTCAGCGGTTAAGATCATCCATAGAG 2356
Query 2294 ACATTAAAGGGACAAATGTTCTACTTGACAAGGATC-TGAACTCAAAGATATCAGATTTC 2352
|||| |||||||||||| | || || |||||||| | ||||||||||||| |||||||||
Sbjct 2357 ACATCAAAGGGACAAATATACTTCTAGACAAGGA-CTTGAACTCAAAGATCTCAGATTTC 2415
Query 2353 GGGTTGGCCAGGCTCCATGAAGACAATCAGAGTCACATTACCACCAGAGTTGCAGGAACA 2412
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 2416 GGGTTGGCCAGGCTCCATGAAGACGATCGGAGTCACATTACCACCAGAGTTGCAGGAACA 2475
Query 2413 ATAGGATATATGGCTCCTGAATATGCAATGAGGGGTCACCTAACAGAAAAGGCAGATGTT 2472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2476 ATAGGATATATGGCTCCTGAATATGCAATGAGGGGTCACCTAACAGAAAAGGCAGATGTT 2535
Query 2473 TACAGCTTCGGTGTGGTGGCAATGGAGATTGTTAGCGGAAAGAGCAACGCGAAAT-ACAC 2531
|||||||||||||| || ||||||||||| |||||||||||||||||||| |||| ||||
Sbjct 2536 TACAGCTTCGGTGTAGTAGCAATGGAGATCGTTAGCGGAAAGAGCAACGC-AAATTACAC 2594
Query 2532 GCCAGAT-GACGAATGTTGTGTTGGCCTTCTCGATTGGGCATTTGTGTTGCAAAAGAAAG 2590
||||||| | ||||||||| |||||||||||||||||||||||||| | ||||||||||
Sbjct 2595 GCCAGATAG-CGAATGTTGCGTTGGCCTTCTCGATTGGGCATTTGTACTACAAAAGAAAG 2653
Query 2591 GGGATATCGCGGAAATTCTGGATCCGAGGCTGGAAGGAATGTTCGATGTGATGGAGGCAG 2650
||| | | || || ||||| ||||||| ||| |||||| ||||| |||||||||| ||||
Sbjct 2654 GGGCTTTTGCAGAGATTCTTGATCCGAAGCTTGAAGGAGTGTTCAATGTGATGGAAGCAG 2713
Query 2651 AGAGAATGATAAAG 2664
||||||||||||||
Sbjct 2714 AGAGAATGATAAAG 2727
Score = 870 bits (471), Expect = 0.0
Identities = 591/649 (91%), Gaps = 8/649 (1%)
Strand=Plus/Plus
Query 1179 AACCAGACTTCTTCCATGTTCCGCCATAAAGC-AATGCCAAAATTATAGTAGATCGCTGC 1237
||||||||||||||| |||||||||||| | | |||| |||||||||||||| ||| |||
Sbjct 1134 AACCAGACTTCTTCCGTGTTCCGCCATAGA-CAAATGTCAAAATTATAGTAGGTCGTTGC 1192
Query 1238 ATATAAACTGTGGGGGACCTGATGTAACCATCGAAAACTCTCGAGGAAGGTTTCTGTATG 1297
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 1193 ATATAAACTGCGGGGGACCTGATGTAACCATCGAAAACTCTAGAGGAAGGTTTCTATATG 1252
Query 1298 AAGGTGATAACTATGGACTTACCGGATCAGCTACGAACTATTATAGGAAAAATTGGGGAT 1357
| ||||||||||||||||||| ||| |||||||||||||||||| |||||| ||||||||
Sbjct 1253 AGGGTGATAACTATGGACTTATCGGTTCAGCTACGAACTATTATGGGAAAAGTTGGGGAT 1312
Query 1358 ACAGCAATACTGGTGACTTTATGGATGATGCAATAACAGAAGATACATACACAGTTTCAT 1417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1313 TCAGCAATACTGGTGACTTTATGGATGATGCAATAACAGAAGATACATACACAGTTTCAT 1372
Query 1418 CAGAATCTGCAGTTTCAGCAAAATATCCAGACCTTTACCAGAATGCTCGGCGCTCTCCCC 1477
||||||||||||| || ||||||||||| ||||||||||||||||||||||| ||||| |
Sbjct 1373 CAGAATCTGCAGTCTCTGCAAAATATCCTGACCTTTACCAGAATGCTCGGCGTTCTCCTC 1432
Query 1478 TCAGTTTGGCTTACTAT-GCATTTTGCTTCGAAAATGGAAGCTACAATGTGAAACTCCAT 1536
| | ||||||||||| | ||||| || || |||||||||||||||||||||||||||||
Sbjct 1433 TGAATTTGGCTTACT-TCGCATTCTGTTTTAAAAATGGAAGCTACAATGTGAAACTCCAT 1491
Query 1537 TTTGCAGAGATTCAGTTCTCAGATGTGGAACCATACACTAAACTAGCGAAACGGGTTTTT 1596
||||||||||||||||||||||||| |||||||| ||| |||||| |||||| |||||
Sbjct 1492 TTTGCAGAGATTCAGTTCTCAGATGAGGAACCATTTGCTAGACTAGCAAAACGGTTTTTT 1551
Query 1597 AACATTTACATTCAGGGGAAGTTGATTTGGGAGGATTTCAGCATTAGAGAGGAGGCTAAT 1656
|| |||||| ||||||| |||||||||||||||||||||||||| || || |||||||||
Sbjct 1552 AATATTTACGTTCAGGGAAAGTTGATTTGGGAGGATTTCAGCATCAGGGATGAGGCTAAT 1611
Query 1657 GGAACTCACAAAGAAGTTAT-AAGAGAAGTAAACACGACCGTGACTGATAACACTTTAGA 1715
||||||||||| |||||||| || |||||| ||||||||||||||||| |||||||||||
Sbjct 1612 GGAACTCACAAGGAAGTTATTAA-AGAAGTGAACACGACCGTGACTGACAACACTTTAGA 1670
Query 1716 GATACGGCTT-TACTGGGCAGGGAAAGGCACAATGATCATTCCTCAAAGAGGGTACTATG 1774
||||||| || |||||||||||||||||||||| ||||||||| |||||||| ||||||
Sbjct 1671 GATACGG-TTGTACTGGGCAGGGAAAGGCACAACAATCATTCCTAAAAGAGGGAACTATG 1729
Query 1775 GCTCTCTTATCTCTGCAGTCTCAGTTTGTCCCAGTTCAGAATCTGAATG 1823
|||||||||| || ||| ||||||| ||||||||||| |||||||||||
Sbjct 1730 GCTCTCTTATTTCAGCAATCTCAGTCTGTCCCAGTTCGGAATCTGAATG 1778
> Ahg912778 jgi|Araly1|912778|Al_scaffold_0001_3032
Length=660
Score = 268 bits (145), Expect = 1e-70
Identities = 221/256 (86%), Gaps = 12/256 (5%)
Strand=Plus/Plus
Query 129 AGTGGAAGCGCTGAAGGATA-T-CA-CTGAAACAT-TGGGTGTGAAGCACTTGAACCTAA 184
|||||||||||| |||| || | || | || || | | ||||||||| || |||||||||
Sbjct 46 AGTGGAAGCGCTCAAGGGTATTGCAGC-GACAC-TCTCGGTGTGAAGTACCTGAACCTAA 103
Query 185 GTGAAGATCCATGTCTCACAAAGACTCTAGTGATATCTCAAGGTGTTCTC-AAGGAAGGA 243
|||||||||||||||||||||||||||| |||||||||||||||| || | || ||||||
Sbjct 104 GTGAAGATCCATGTCTCACAAAGACTCTGGTGATATCTCAAGGTGCTC-CGAATGAAGGA 162
Query 244 CAGAACAGCACAATCAGATGTGACTGTCATTTC-AATAACTACAGCACTTGTCATATCAA 302
|||||||||||||||||||||||||||||||| || ||| ||| ||||||||||||||
Sbjct 163 CAGAACAGCACAATCAGATGTGACTGTCATTTTGAA-AACAACACCACTTGTCATATCAC 221
Query 303 ACACTTTGTCCTCCAGAAATTCAATCTTCCAGGTAGACTTCCTCC-AATGCTGTACAAGT 361
|| |||||||||| ||| ||||| |||||||||| ||||||| || ||| ||| ||||||
Sbjct 222 ACGCTTTGTCCTCAAGACATTCAGTCTTCCAGGTCGACTTCCACCGAAT-CTGAACAAGT 280
Query 362 TTCGGCATCTTGAATC 377
| | | ||||||||||
Sbjct 281 TGCAGTATCTTGAATC 296
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115413442350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5