BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29740.1
Length=3237
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473176 jgi|Araly1|473176|fgenesh2_kg.1__3130__AT1G29740.1 2379 0.0
Ahg912778 jgi|Araly1|912778|Al_scaffold_0001_3032 261 2e-68
Ahg922155 jgi|Araly1|922155|scaffold_103436.1 126 9e-28
> Ahg473176 jgi|Araly1|473176|fgenesh2_kg.1__3130__AT1G29740.1
Length=2727
Score = 2379 bits (1288), Expect = 0.0
Identities = 1497/1599 (94%), Gaps = 10/1599 (1%)
Strand=Plus/Plus
Query 1179 AACCAGACTTCTTCCGTGTTCTGCCATAAACCTATGCCAAAATTATAATAGGTCGTTGCA 1238
||||||||||||||||||||| |||||| || ||| |||||||||| ||||||||||||
Sbjct 1134 AACCAGACTTCTTCCGTGTTCCGCCATAGACAAATGTCAAAATTATAGTAGGTCGTTGCA 1193
Query 1239 TATAAACTGTGGGGGACCTGATGTAACCATCGAAAACTCTAGAGGAAGGTTTCTATATGA 1298
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 TATAAACTGCGGGGGACCTGATGTAACCATCGAAAACTCTAGAGGAAGGTTTCTATATGA 1253
Query 1299 GGGTGATAACTATGGACTTACCGGATCAGCTACGAACTATTATGGGAAAAATTGGGGATT 1358
|||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||
Sbjct 1254 GGGTGATAACTATGGACTTATCGGTTCAGCTACGAACTATTATGGGAAAAGTTGGGGATT 1313
Query 1359 CAGCAATACTGGTGACTTTATGGATGATGCAATAACAGAAGATACATACACAGTTTCATC 1418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 CAGCAATACTGGTGACTTTATGGATGATGCAATAACAGAAGATACATACACAGTTTCATC 1373
Query 1419 AGAATCTGCAGTTTCAGCCAAATATCCAGACCTTTACCAGAATGCTCGGCGTTCTCCCCT 1478
|||||||||||| || || |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1374 AGAATCTGCAGTCTCTGCAAAATATCCTGACCTTTACCAGAATGCTCGGCGTTCTCCTCT 1433
Query 1479 GAGTTTGGCTTACTTTGCCA-TCTGTTTTGAAAATGGAAGCTACAATGTGAAACTCCATT 1537
|| |||||||||||| | || |||||||| ||||||||||||||||||||||||||||||
Sbjct 1434 GAATTTGGCTTACTTCG-CATTCTGTTTTAAAAATGGAAGCTACAATGTGAAACTCCATT 1492
Query 1538 TTGCAGAGATTCAGTTCTCAGATGAGGAACCTTTTTCTAGACTAGCAAAACGGGTTTTTA 1597
||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||
Sbjct 1493 TTGCAGAGATTCAGTTCTCAGATGAGGAACCATTTGCTAGACTAGCAAAACGGTTTTTTA 1552
Query 1598 ACATTTACGTTCAGGGGAAGTTGATTTGGGAGGATTTTAGCATCAGGGAGGAGGCTAATG 1657
| |||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1553 ATATTTACGTTCAGGGAAAGTTGATTTGGGAGGATTTCAGCATCAGGGATGAGGCTAATG 1612
Query 1658 GAACTCACAAAGAAGTTATAAAAGAAGTGAACACAACCGTGACTGATAACACTTTAGAGA 1717
|||||||||| |||||||| |||||||||||||| ||||||||||| |||||||||||||
Sbjct 1613 GAACTCACAAGGAAGTTATTAAAGAAGTGAACACGACCGTGACTGACAACACTTTAGAGA 1672
Query 1718 TACGGTTGTACTGGGCGGGGAAAGGCACGACGATCATTCCTAAAAGAGGGAACTATGGCT 1777
|||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1673 TACGGTTGTACTGGGCAGGGAAAGGCACAACAATCATTCCTAAAAGAGGGAACTATGGCT 1732
Query 1778 CTCTTATCTCTGCAATCTCAGTCTGTCCCAGTTCAGAATCTGAATGTGGCGTTCCGGTGC 1837
||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1733 CTCTTATTTCAGCAATCTCAGTCTGTCCCAGTTCGGAATCTGAATGTGGCGTTCCGGTGC 1792
Query 1838 AAATTCATCCAGTCACAAAACAACAACACAAACAAAGAAAATATCATCTCATTCTCGGCA 1897
||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||
Sbjct 1793 CAATTCATCCAGTCACAAAACAACAAAACAAACCAAGAAAATATCCTCTCATTCTCGGCA 1852
Query 1898 TAGCAGCCTTAATAGTCTCTCTTTCTTTCTTGATATTGGGCGCTTTATATTGGAGAATAT 1957
|||||||||||||| |||||||| |||||||||| |||||||| | ||||||| |||||
Sbjct 1853 TAGCAGCCTTAATACTCTCTCTTGCTTTCTTGATTTTGGGCGCCCTCTATTGGAAAATAT 1912
Query 1958 GCGTTAGCAATGCAGATGGA-GAGAAAAGAGGTTCCTTCAGTTTGAGGCAACTAAAAGTT 2016
| ||||| |||||||||| | || ||||||||||||||||||||||||||||||||||||
Sbjct 1913 GTGTTAGAAATGCAGATGCAGGA-AAAAGAGGTTCCTTCAGTTTGAGGCAACTAAAAGTT 1971
Query 2017 GCAACAGATGATTTTAATCCGTTAAACAAGATTGGAGAAGGCGGCTTCGGATCTGTTTAT 2076
|| || |||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1972 GCGACTGATGATTTTAATCCGTCAAATAAGATTGGAGAAGGCGGCTTCGGATCTGTTTAT 2031
Query 2077 AAGGGGCGCTTACCAAATGGAACGTTGATTGCGGTCAAGAAGCTATCTTCCAAATCATGT 2136
|||||| | |||||| ||||||| ||||||||||| |||||| ||||||||||||| |
Sbjct 2032 AAGGGGAGATTACCAGATGGAACATTGATTGCGGTAAAGAAGTTATCTTCCAAATCCCAT 2091
Query 2137 CAAGGCAATAAAGAGTTTATAAACGAGATCGGTATAATCGCTTGTCTGCAGCACCCGAAT 2196
||||| || |||||||| |||||||||| ||||| |||||||| ||||||||||||||
Sbjct 2092 CAAGGTAACAAAGAGTTCGTAAACGAGATAGGTATGATCGCTTGCCTGCAGCACCCGAAC 2151
Query 2197 CTTGTGAAGCTTTATGGATGCTGTGTTGAGAAAACCCAGCTGCTTCTTGTCTATGAGTAC 2256
||||| || |||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 2152 CTTGTAAAACTTTATGGATGCTGTGTTGAAAAAAACCAGCTGCTTCTTGTCTATGAGTAC 2211
Query 2257 TTGGAGAACAATTGTCTTGCCGATGCATTATTTGGAAGAAGCGGTCTGAAACTAGACTGG 2316
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 2212 TTGGAGAACAATTGTCTTGCCGATGCATTATTCGGAAGAAGTGGTCTGAAACTAGACTGG 2271
Query 2317 AGAACAAGACACAAAATATGCTTGGGAATAGCAAGAGGGCTTGCCTTT-CTTCATGAAGA 2375
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 2272 AGAACAAGACACAAAATATGCTTGGGAATAGCAAGAGGGCTTG-CTTTCCTTCATGAAGA 2330
Query 2376 TTCAGCGGTTAAGATCATTCACAGAGACATCAAAGGAACAAATATACTGCTAGACAAGGA 2435
|||||||||||||||||| || |||||||||||||| ||||||||||| |||||||||||
Sbjct 2331 TTCAGCGGTTAAGATCATCCATAGAGACATCAAAGGGACAAATATACTTCTAGACAAGGA 2390
Query 2436 TC-TGAACTCAAAGATATCAGATTTCGGATTGGCCAGGCTACACGAAGACGATCAGAGTC 2494
| ||||||||||||| ||||||||||| ||||||||||| || |||||||||| |||||
Sbjct 2391 -CTTGAACTCAAAGATCTCAGATTTCGGGTTGGCCAGGCTCCATGAAGACGATCGGAGTC 2449
Query 2495 ACATTACCACCAGAGTTGCAGGAACAATAGGATATATGGCTCCTGAATATGCAATGAGGG 2554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2450 ACATTACCACCAGAGTTGCAGGAACAATAGGATATATGGCTCCTGAATATGCAATGAGGG 2509
Query 2555 GTCACCTAACAGAAAAGGCAGATGTTTACAGCTTCGGTGTAGTAGCAATGGAGATCGTTA 2614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2510 GTCACCTAACAGAAAAGGCAGATGTTTACAGCTTCGGTGTAGTAGCAATGGAGATCGTTA 2569
Query 2615 GCGGAAAGAGCAACGCAAATTACACGCCAGATAACGAATGTTGCGTTGGCCTTCTCGATT 2674
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2570 GCGGAAAGAGCAACGCAAATTACACGCCAGATAGCGAATGTTGCGTTGGCCTTCTCGATT 2629
Query 2675 GGGCATTTGTACTACAAAAGAAAGGAGCATTTG-ATGAGATTCTGGATCCGAAGCTTGAA 2733
||||||||||||||||||||||||| || |||| | |||||||| |||||||||||||||
Sbjct 2630 GGGCATTTGTACTACAAAAGAAAGGGGCTTTTGCA-GAGATTCTTGATCCGAAGCTTGAA 2688
Query 2734 GGAGTGTTTGATGTGATGGAGGCAGAGAGAATGATAAAG 2772
|||||||| |||||||||| ||||||||||||||||||
Sbjct 2689 GGAGTGTTCAATGTGATGGAAGCAGAGAGAATGATAAAG 2727
Score = 1779 bits (963), Expect = 0.0
Identities = 1081/1138 (95%), Gaps = 7/1138 (1%)
Strand=Plus/Plus
Query 1 ATGTCTGCAGCTTACAAGCTCATGATCATGTCGCGAAGCCGCCTTTTTAGCTCTCTACTC 60
||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 1 ATGTCTGTAGCTTACAAGCTCATGATCATGTCGCAAAGCCGCCTTTTTAGCTCTGTACTC 60
Query 61 TCTGTTCTTACTCTTATCTACTTGGTCTGTACAGTATTATCTGCTTCTCCTTCTCTGCAC 120
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 61 TCTGTTCTTACTCTTATCTACTTGGTCTGTAC--T-GTATCTGCTTCTCCTTCTCTGCAC 117
Query 121 CCAGATGAAGTGGAAGCGCTTAAGGATATTGCATTGACACTCGGTGTGAAACACTTGAAC 180
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 118 CCAGATGAAGTGGAAGCGCTTAAAGATATTGCATTGACACTTGGTGTGAAACACTTGAAC 177
Query 181 CTAAGTGAAGATCCATGTCTCACAAAGACTCTGGTTATAACTCAAGATGTTCTCAAGGAA 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 CTAAGTGAAGATCCGTGTCTCACAAAGACTCTGGTTATAACTCAAGATGTTCTCAAGGAA 237
Query 241 GGACAAAACAGCACAATCAGATGTGACTGTC-ATTTCAACAACAACAATACTTGTCATAT 299
||||||||||||||||||| ||||||||||| | ||||| |||||||| |||||||||||
Sbjct 238 GGACAAAACAGCACAATCAAATGTGACTGTCGA-TTCAATAACAACAACACTTGTCATAT 296
Query 300 TACACACTTTGTCCTTAAGACATTCAGTCTTCCTGGTAGACTTCCACCAGAATTTTCGAA 359
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 297 TACACACTTTGTCCTTAAGACATTCAGTCTTCCCGGTAGACTTCCAACAGAATTTTCGAA 356
Query 360 GCTTCGGTATCTTGAATTTATTGACTTGTGCCGTAATTATCTTTATGGCTCAATTCCTAT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GCTTCGGTATCTTGAATTTATTGACTTGTGCCGTAATTATCTTTATGGCTCAATTCCTAT 416
Query 420 GGAATGGGCTTCACTGCCTTACCTAAAATCTATCTCTGTTTGCGCGAATCGCTTAACAGG 479
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 417 GGAATGGGCCTCACTGCCTTACCTAAAATCTATCTCTGTTTGCGCGAATCGCTTATCAGG 476
Query 480 AGACATTCCAAAGGGATTAGGGAAGTTTATTAACCTCACTCAATTAGGTCTTGAAGCCAA 539
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 477 AGACATTCCAAAGGGATTAGGGAAGTTTATTAACCTCACTCAATTAGTTCTTGAAGCCAA 536
Query 540 TCAGTTCTCTGGAACTATCCCAAAGGAACTAGGGAACTTGGTTAATCTAGAAGGATTAGC 599
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TCAATTCTCTGGAACAATCCCAAAGGAACTAGGGAACTTGGTTAATCTAGAAGGATTAGC 596
Query 600 ATTTTCTTCTAACCAACTAGTTGGAGGTGTACCCAAGACATTAGCAAGACTAAAGAAGCT 659
| ||||||| ||| |||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 597 ACTTTCTTCCAACGAACTAGTTGGAGGTGTACCCAAGACATTAGCAAGACTAAAAAATCT 656
Query 660 GACTAATCTACGATTCAGCGATAATCGCCTTAATGGATCCATCCCTGAGTTTATAGGGAA 719
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 657 GACTAATCTACGATTCAGCGACAATCGCCTTAATGGATCCATCCCTGAGTTTATCGGGAA 716
Query 720 CTTATCAAAACTTCAAAGATTAGAACTTTACGCGAGTGGCTTAAAAGACCCTATTCCATA 779
|||||||||||||||||||||||| ||||||||||||||| ||| || ||||||||| |
Sbjct 717 CTTATCAAAACTTCAAAGATTAGAGCTTTACGCGAGTGGCCTAACCGAACCTATTCCAGA 776
Query 780 CTCCATATTTCGTCTAGAGAATCTGATTGACCTGAGAATCAGCGACACAGCTGCAGGATT 839
||||||||||||||||||||| | ||||||||||| |||||||||||| |||||| |||
Sbjct 777 GTCCATATTTCGTCTAGAGAATTTAATTGACCTGAGGATCAGCGACACAACTGCAGCATT 836
Query 840 GGGACAAGTTCCTCTTATAACTAGCAAGAGCCTGAAATTTTTGGTTCTAAGAAACATGAA 899
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 GGGACTAGTTCCTCTTATAACTAGCAAGAGCCTGAAATTTTTGGTTCTAAGAAACATGAA 896
Query 900 CTTAACAGGACCAATCCCAACCAGTCTTTGGGATCTTCCCAATCTCATGACTCTCGATCT 959
||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 897 CTTAAGAGGACCAATCCCAACCAGTCTCTGGGATCTTCCCAATCTCATGACGCTCGATCT 956
Query 960 TTCTTTCAATAGACTGACAGGAGA-AGTACCAGCAGATGCAAGCGCGCCAAAATATACAT 1018
|||||| ||||||||||| ||||| | |||||||||||||||| ||||||||||||||||
Sbjct 957 TTCTTTTAATAGACTGACTGGAGAGA-TACCAGCAGATGCAAGTGCGCCAAAATATACAT 1015
Query 1019 ATTTGGCAGGAAACATGTTGTCAGGAAAAGTTGAGTCAGGACCTTTCCTTACTGCAAGCA 1078
||||||| ||||| |||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1016 ATTTGGCTGGAAATATGTTGTCAGGAAAAGTTGAATCAGGACCTTTCCTTACAGCAAGCA 1075
Query 1079 CCAATATTGATCTCTCTTATAATAACTTCACATGGTCTCAAAGCTGCAAAGAGAGGAA 1136
||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1076 CCAATATTGATCTTTCTTATAATAACTTTACATGGTCTCCAAGCTGCAAAGAGAGGAA 1133
> Ahg912778 jgi|Araly1|912778|Al_scaffold_0001_3032
Length=660
Score = 261 bits (141), Expect = 2e-68
Identities = 219/255 (86%), Gaps = 12/255 (5%)
Strand=Plus/Plus
Query 129 AGTGGAAGCGCTTAAGGATATTGCATTGACA--CTCGGTGTGAAACACTTGAACCTAAGT 186
|||||||||||| |||| ||||||| |||| ||||||||||| || |||||||||||
Sbjct 46 AGTGGAAGCGCTCAAGGGTATTGCAGCGACACTCTCGGTGTGAAGTACCTGAACCTAAGT 105
Query 187 GAAGATCCATGTCTCACAAAGACTCTGGTTATAACTCAAGATGTTCTC-AAGGAAGGACA 245
||||||||||||||||||||||||||||| ||| |||||| || || | || ||||||||
Sbjct 106 GAAGATCCATGTCTCACAAAGACTCTGGTGATATCTCAAGGTGCTC-CGAATGAAGGACA 164
Query 246 AAACAGCACAATCAGATGTGACTGTCATTTC-AACAACAACAATACTTGTCATATTACAC 304
||||||||||||||||||||||||||||| || ||||||| ||||||||||| ||||
Sbjct 165 GAACAGCACAATCAGATGTGACTGTCATTTTGAA-AACAACACCACTTGTCATATCACAC 223
Query 305 ACTTTGTCCTTAAGACATTCAGTCTTCCTGGTAGACTTCCACCAGAATTTT--CGAAGCT 362
||||||||| ||||||||||||||||| ||| |||||||||| |||| | | ||| |
Sbjct 224 GCTTTGTCCTCAAGACATTCAGTCTTCCAGGTCGACTTCCACC-GAATCTGAAC-AAG-T 280
Query 363 T-CGGTATCTTGAAT 376
| | |||||||||||
Sbjct 281 TGCAGTATCTTGAAT 295
> Ahg922155 jgi|Araly1|922155|scaffold_103436.1
Length=304
Score = 126 bits (68), Expect = 9e-28
Identities = 100/115 (87%), Gaps = 4/115 (3%)
Strand=Plus/Plus
Query 2086 TTACCAAATGGAACGTTGATTGCGGTCAAGAAGCTATCTTCCAAATCATGTCAAGGCAAT 2145
|||| | ||||||| ||||||||| | |||||||||||||||||||||||||||||||
Sbjct 34 TTACTAGATGGAACATTGATTGCGATAAAGAAGCTATCTTCCAAATCATGTCAAGGCAC- 92
Query 2146 AAAGAGTTTATAAACGAGATCGGTATAATCGCTTGTC--TGCAGCACCCGAATCT 2198
||||| ||| ||||||||||| |||| ||| |||| | ||||||||||||||||
Sbjct 93 AAAGA-TTTGTAAACGAGATCAGTATGATCACTTGCCCCTGCAGCACCCGAATCT 146
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122164809330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5