BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29750.2
Length=3311
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473178 jgi|Araly1|473178|fgenesh2_kg.1__3132__AT1G29750.2 5206 0.0
> Ahg473178 jgi|Araly1|473178|fgenesh2_kg.1__3132__AT1G29750.2
Length=3249
Score = 5206 bits (2819), Expect = 0.0
Identities = 3127/3273 (96%), Gaps = 32/3273 (1%)
Strand=Plus/Plus
Query 6 GATTTATCATTTTCGATGAGACATTGTTTTACAGAGATATTTTTGTTGCAATGATATCTC 65
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 GATTTATCATTTTCGATGAGACATTGATTTACAGAGATATTTTTGTTGCAATGATATCTC 60
Query 66 TGTATCAAATATTGGCCGagaagaagaagaagaag-a-aA-AATGATCTTAACATCTTTG 122
|||||||||| |||||||||||||||||||||||| | || || ||| ||||||||||||
Sbjct 61 TGTATCAAATGTTGGCCGAGAAGAAGAAGAAGAAGAAGAAGAAAGATGTTAACATCTTTG 120
Query 123 C-ATTTTCTGTTTTTGCCATCATTTGCTTCAAATTTTATAGTGTAAATGCTATCAAATTA 181
| ||||| ||||||||||||||| |||||||||||||| ||| | |||||||||||||||
Sbjct 121 CAATTTT-TGTTTTTGCCATCATCTGCTTCAAATTTTACAGTATTAATGCTATCAAATTA 179
Query 182 CCGCAGCAAGAAGTCGATGCTCTGCAGCAAATCGCTACCACATTGGGCTCGAAATTCTGG 241
|||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 180 CCGCAGCAAGAAGTCGATGCTCTGCAACAAATCGCAACCACATTGGGATCGAAATTCTGG 239
Query 242 AAATTCGATGCTGAAAATTGTAAGATTGAAATGGTGGGGTTAACTGAAACTCCTCCTCCA 301
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 240 AAATTTGATGCTGAAAATTGTAAGATTGAGATGGTGGGGTTAACTGAAACTCCTCCTCCA 299
Query 302 ACAGCTAAGCAAGAAATAGAATGTGAATGCAGTCCCACTAACGACACTGATTGTCATGTT 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 300 ACAGCTAAGCAAGAAATAGAATGTGAATGCAGTCCCACTAACGACACTGATTGTCATATT 359
Query 362 GTCAAATTTGCATTCAAGGACCATAATCTTCCAGGAACTCTTCCTCAAATAGTCAAGCTT 421
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 360 GTGAAATTTGCATTCAAGGAGCATAATCTTCCAGGAACTCTTCCTCAAATAGTCAAGCTT 419
Query 422 CCCTACCTTCGGGAGATAGACTTGGCCTACAACTACATCAATGGGACCTTACCTCGTGAA 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CCCTACCTTCGGGAGATAGACTTGGCCTACAACTACATCAATGGGACCTTACCTCGTGAA 479
Query 482 TGGGCTTCTTCAAATTTAACTTTTATTTCTCTTCTTGTGAATCGGTTGTCTGGAGAAATT 541
||||||||||||||||| |||||||| |||||||||||||| |||||||| || ||||||
Sbjct 480 TGGGCTTCTTCAAATTTGACTTTTATCTCTCTTCTTGTGAACCGGTTGTCAGGGGAAATT 539
Query 542 CCGAAGGAGTTTGGAAACTCTTCT---CTAACATACTTGGATCTCGAGTCAAATGCGTTT 598
||||| ||||| |||||||||||| |||||||| ||||||||||||||||||| ||||
Sbjct 540 CCGAAAGAGTTCGGAAACTCTTCTACACTAACATATTTGGATCTCGAGTCAAATGAGTTT 599
Query 599 TCTGGAACTATTCCTCAGGAGCTTGGGAACTTAGTCCACTTGAAAAAACTGTTGCTTTCC 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TCTGGAACTATTCCTCAGGAGCTTGGGAACTTAGTCCACTTGAAAAAACTGTTGCTTTCC 659
Query 659 TCTAACAAATTGACCGGAACTTTGCCAGCTTCACTAGCTAGACTACAGAATATGACAGAT 718
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TCTAACAAATTGACGGGAACTTTGCCAGCTTCACTAGCTAGACTACAGAATATGACAGAT 719
Query 719 TTCAGGATTAACGATCTTCAACTCAGTGGAACGATACCTAGTTACATACAAAATTGGAAG 778
||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||
Sbjct 720 TTCAGGATTAACGATCTTCAACTAAGTGGAATGATACCTAGTTACTTACAAAATTGGAAG 779
Query 779 CAACTCGAGAGACTTGAAATGATTGCATCTGGTCTCACTGGTCCAATCCCATCGGTCATC 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CAACTCGAGAGACTTGAAATGATTGCATCTGGTCTCACTGGTCCAATCCCATCGGTCATC 839
Query 839 TCAGTTCTGAGCAATCTTGTTAATCTGAGGATCAGTGATATACGTGGACCAGTCCAACCA 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TCAGTTCTGAGCAATCTTGTTAATCTGAGGATCAGTGATATACGTGGACCAGTCCAACCA 899
Query 899 TTCCCTTCGTTGAAGAACGTGACAGGTCTAACTAAAATTATATTGAAGAACTGTAACATT 958
||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||
Sbjct 900 TTCCCTTCGTTGAAGAACGTGACAGGTTTAGTTAAACTTATATTGAAGAACTGTAACATT 959
Query 959 TCTGGACAAATTCCTACTTATCTTTCACATTTGAAGGAGTTGGAGACACTGGATTTGAGT 1018
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 960 TCTGGACAAATTCCTACTTATCTTTCAAATTTGAAGGAGTTGGAGACACTGGATTTGAGT 1019
Query 1019 TTTAACAAGTTGGTTGGGGGAATTCCGTCGTTTGCACAAGCAGAAAATTTACGGTTTATA 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TTTAACAAGTTGGTTGGGGGAATTCCGTCGTTTGCACAAGCAGAAAATTTACGGTTTATA 1079
Query 1079 ATTTTGGCTGGAAATATGCTCGAGGGAGATGCTCCAGATGAATTACTAAGAGATGGAATC 1138
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 ATTTTGGCTGGTAATATGCTCGAGGGAGATGCTCCAGATGAATTACTAAGAGATGGAATC 1139
Query 1139 ACAGTAGATCTTTCATATAACAATCTCAAGTGGCAGAGTCCTGAAAGTCGTGCTTGTCGC 1198
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1140 ACACTAGATCTTTCATATAACAATCTGAAGTGGCAGAGTCCTGAAAGTCGTGCTTGTCGC 1199
Query 1199 CCAAATATGAATCTGAATCTAAACTTGTTTCAGAGCACTTCGACaaaaaaaTCGAGCAAA 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 CCAAATATGAATCTGAATCTAAACTTGTTTCAGAGCACTTCGACAAAAAAATCGAGCAAA 1259
Query 1259 TTTCTGCCGTGTATCAAAGATTTCAAATGTCCTCGATATTCTAGCTGCTTGCATGTGAAC 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 TTTCTGCCGTGTATCAAAGATTTCAAATGTCCTCGATATTCTAGCTGCTTGCATGTGAAC 1319
Query 1319 TGCGGTGGAAGCGATATGTATGTTAAGGAGaaaaaaaCAAAAGAATTATATGAAGGAGAT 1378
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1320 TGCGGTGGAAGCGATATATATGTAAAGGAGAAAAAAACAAAAGAATTATATGAAGGAGAT 1379
Query 1379 GGAAATGTTGAAGGTGGTGCTGCTAAGTATTTTTTGAAGCCTGACGCTAATTGGGGATTT 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 GGAAATGTTGAAGGTGGTGCTGCTAAGTATTTTTTGAAGCCTGACGCTAATTGGGGATTT 1439
Query 1439 AGCAGCACAGGGGACTTCATGGACGATAACAATTTCCAAAACACTAGATTCACCATGTTT 1498
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1440 AGCAGTACAGGGGACTTCATGGACGACAACAATTTCCAAAACACTAGATTCACCATGTTT 1499
Query 1499 GTCCCGGCATCTAACCAGTCTGATCTCTACAAATCGGCACGAATTGCTCCAGTATCTCTA 1558
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1500 GTCCCGGCATCTAACCTGTCTGATCTCTACAAATCGGCACGAATAGCTCCAGTATCTCTA 1559
Query 1559 ACTTACTTCCATGCCTGCTTGGAAAATGGAAATTACACTATAAATCTAGACTTCGCTGAG 1618
|||||||||||||||||| ||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 1560 ACTTACTTCCATGCCTGCCTGGAAAATGGAAACTACACTATAAATCTGGACTTTGCTGAG 1619
Query 1619 ATACGGTTCACCAATGATGAAAACTATAACCGGCTTGGAAGGCGTCTGTTTGACATTTAC 1678
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1620 ATGCGGTTCACCAATGATGAAAACTATAGCCGGCTTGGAAGGCGTCTGTTTGACATTTAC 1679
Query 1679 ATTCAGGAGAAATTAGTGGCAAAGGACTTTAACATCATGGATGAAGCAAAGGGAGCTCAA 1738
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1680 ATTCAGGAGAAATTAGTGGCAAAGGACTTCAACATCATGGATGAAGCAAAGGGAGCTCAA 1739
Query 1739 ACACCTATAATCAAACCACTTACTGCCTATGTGACAAACCACTTTTTAACCATCCGGTTG 1798
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1740 ACACCTATAATCAAACCATTTACTGCCTATGTGTCAAACCACTTTTTAACCATCCGGTTG 1799
Query 1799 AGTTGGGCCGGTAAAGGAACTACCAGGATTCCCACTAGAGGGGTTTATGGTCCTATCATA 1858
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1800 AGTTGGGCCGGTAAAGGAACTACCAGGATTCCCACTAGAGGGGTTTATGGTCCTCTCATA 1859
Query 1859 TCGGCTATTTCCATAGTTTCAGATTCCAAGCCGTGCGAACGTCCGAAAACTGGAATGAGC 1918
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 1860 TCGGCTATTTCCATAGTTTCAGATTCTAAGCCGTGCGAACGTCCGGAAACTGGAATGAGC 1919
Query 1919 CCTGGAGCATATATTGCAATTGGAATTGGAGCACCATGTCTTATTATCTTTATACTGGGA 1978
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||
Sbjct 1920 CCTGGAGCATATATTGCAATTGGAGTTGGAGCACCATGCCTTATTATCTTTATAGTGGGA 1979
Query 1979 TTTCTGTGGATATGTGGCTGCCTCCCAAGATGTGGTCGACAACGAAAAGATCCGTATGAA 2038
|||||||||| ||||||||||||||||||||||||| || |||||||||||| ||||||
Sbjct 1980 ATTCTGTGGATGTGTGGCTGCCTCCCAAGATGTGGTCAACGACGAAAAGATCCCTATGAA 2039
Query 2039 GAAGAGTTGCCTTCTGGAACTTTTACATTGAGGCAAATCAAATTCGCTACGGATGACTTC 2098
||||||||||||||||||||||||||||| |||||||| ||||| ||||| |||||||||
Sbjct 2040 GAAGAGTTGCCTTCTGGAACTTTTACATTAAGGCAAATTAAATTTGCTACAGATGACTTC 2099
Query 2099 AATCCAACTAACAAGATTGGAGAAGGTGGTTTCGGTGCTGTCTTTAAGGGTGTGTTAGCA 2158
|||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||
Sbjct 2100 AATCCAACTAACAAGATTGGAGAAGGTGGTTTCGGTCCAGTGTTTAAGGGTGTGTTAGCA 2159
Query 2159 GATGGAAGAGTTGTAGCAGTTAAGCAACTCTCATCTAAATCGAGACAAGGGAACCGAGAA 2218
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2160 GATGGAAGAGTTGTAGCAGTCAAGCAACTCTCATCTAAATCGAGACAAGGGAACCGAGAA 2219
Query 2219 TTTCTAAACGAGATAGGCGCAATTTCTTGTCTTCAACATCCAAATCTCGTCAAGCTTCAT 2278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2220 TTTCTAAACGAGATAGGCGCAATTTCTTGTCTTCAACATCCAAATCTCGTCAAGCTTCAT 2279
Query 2279 GGTTTCTGCGTCGAGCGGGCTCAGCTATTACTGGCGTACGAATACATGGAAAATAACAGT 2338
|| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2280 GGCTTCTGCGTTGAGCGGGCTCAGCTATTACTGGTGTACGAATACATGGAAAATAACAGT 2339
Query 2339 TTATCTAGCGCGTTATTCAGTCCAAAGCATAAACAGATACCAATGGACTGGCCTACTAGG 2398
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 2340 TTATCTAGCGCGTTATTCAGTCCAAAGCATAAACAGATTCCAATGGACTGGTCTACTAGG 2399
Query 2399 TTTAAGATTTGCTGCGGGATCGCAAAGGGTCTCGCGTTTCTCCATGAGGAATCACCGTTG 2458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2400 TTTAAGATTTGCTGCGGGATCGCAAAGGGTCTCGCGTTTCTCCATGAGGAATCACCGTTG 2459
Query 2459 AAGTTTGTACATAGAGACATCAAGGCCACAAATATTTTATTGGACAAGGACTTAACTCCC 2518
||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 2460 AAGTTTGTACACAGAGACATTAAGGCCACAAATATTTTATTGGACAAGGATTTAACTCCC 2519
Query 2519 AAGATATCTGATTTCGGATTGGCTAGGCTTGACGAAGAGGAGAAAACACACATCAGCACC 2578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2520 AAGATATCTGATTTCGGATTGGCTAGGCTTGACGAAGAGGAGAAAACACACATCAGCACC 2579
Query 2579 AAAGTTGCTGGGACTATAGGATATATGGCACCAGAATACGCACTGTGGGGCTACCTAACT 2638
||||| || |||||||||||||||||||| |||||||||||||||||||| ||| |||||
Sbjct 2580 AAAGTCGCCGGGACTATAGGATATATGGCGCCAGAATACGCACTGTGGGGTTACTTAACT 2639
Query 2639 TTCAAAGCAGATGTCTACAGCTTCGGTGTTTTGGTTCTAGAAATCGTCGCCGGCATAACC 2698
|||||||||||||||||||| || ||||||||||||||||| |||||||| |||||||||
Sbjct 2640 TTCAAAGCAGATGTCTACAGTTTTGGTGTTTTGGTTCTAGAGATCGTCGCTGGCATAACC 2699
Query 2699 AACAGTAATTTCATGGGGGCAGGAGATTCCGTTTGCCTCTTAGAATTTGCTAACGAGTGC 2758
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2700 AACAGTAATTTCATGGGGGCAGGAGATTCCGTTTGCCTCTTGGAATTTGCTAACGAGTGC 2759
Query 2759 GTAGAATCGGGGCACTTGATGCAAGTAGTGGATGAGAGGTTGAGGCCTGAAGTGGATAGA 2818
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||| | |||
Sbjct 2760 GTAGAATCAGGGCACTTGATGCAAGTAGTGGATGAGAGATTGAGGCCTGAAGTGAACAGA 2819
Query 2819 AAAGAAGCAGAGGCGGTTATAAAAGTGGCTCTCGTGTGCTCGAGCGCTTCTCCAACAGAT 2878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2820 AAAGAAGCAGAGGCGGTTATAAAAGTGGCTCTCGTGTGCTCGAGCGCTTCTCCAACAGAT 2879
Query 2879 CGTCCTTTAATGTCAGAGGTCGTTGCTATGCTAGAAGGTCTATATCCAGTGCCAGAATCA 2938
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2880 CGTCCTATAATGTCAGAGGTCGTTGCTATGCTCGAAGGTCTATATCCAGTGCCAGAATCA 2939
Query 2939 ACACCAGGAGTAAGCAGGAACGCAGGGGATATAAGGTTTAAGGCATTTAAAGATTTAAGG 2998
|| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 2940 ACCCCAGGAGTAAGCAGGAACTCAGGGGATATAAGGTTTAAGGCGTTTAAAGATTTAAGG 2999
Query 2999 AGAGGCATGGAGAACAATAGTAAGACGCAGTGTTCTGTTAAAAGCTATCCGTCTTCTTCT 3058
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 3000 AGAGGCATGGAGAACAATAGTAAGACGCAGTGTTCTGTTAAAAGTTATCCGTCTTCTTCT 3059
Query 3059 TCGACTTCTTCTGGGGCAGGACAAGCAGTTCAAGAAAGAAAGAAAGAAGAGTCAAGGCCT 3118
||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 3060 TCGTCTTCGTCTGGGGCAGGACAAGTAGTTCAAGAAAGAAAGAAAGAAGAGTCAAGGTCT 3119
Query 3119 TGAAGAGGTTTTGAAT-CCTTCCCTCTCttttttttttttttGTAAAATGTCTGTCTTTA 3177
||||| | | | ||| |||||||||||||||||||| ||||||||| | | |
Sbjct 3120 TGAAGTGATATCCAATTCCTTCCCTCTCTTTTTTTTT-----GTAAAATGT-T-T----A 3168
Query 3178 GTAAAATGTTTATGAGTTTATTCTGTGATTAGTCATTTACTGTAATTCCCCATATCTGTA 3237
| | | | || |||| ||||||||||||||| |||||||||||||| ||||
Sbjct 3169 -T-----G---A-G--TTCATTCCATGATTAGTCATTTACAGTAATTCCCCATATTTGTA 3216
Query 3238 TTTAGGTTCTGTTAGTTGGGGATTGAATGTTGT 3270
|||||||||| ||||||||||||||||||||||
Sbjct 3217 TTTAGGTTCTTTTAGTTGGGGATTGAATGTTGT 3249
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124981069732
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5