BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29760.1
Length=1842
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922016 jgi|Araly1|922016|scaffold_103297.1 2292 0.0
Ahg482394 jgi|Araly1|482394|fgenesh2_kg.4__1454__AT2G34380.1 505 6e-142
> Ahg922016 jgi|Araly1|922016|scaffold_103297.1
Length=1628
Score = 2292 bits (1241), Expect = 0.0
Identities = 1533/1663 (92%), Gaps = 63/1663 (4%)
Strand=Plus/Plus
Query 24 TCTTCTTCTGGGTTATCATCACCATCAATGGACTCCGAGTCCGAGTCCGA---GTCA--A 78
||||||||||||||||||| |||||||||| ||||| ||||||||||| ||| |
Sbjct 1 TCTTCTTCTGGGTTATCAT---CATCAATGGAGTCCGACTCCGAGTCCGACTCTTCATCA 57
Query 79 A-CCCTAGCACCACGGACGAATTCGATCGATTCCTCGACGCACCTGACGAATTTTACTAC 137
| |||||||||||| || ||||||||||||||||| |||| |||||||| |||||||||
Sbjct 58 AGCCCTAGCACCACCGAAGAATTCGATCGATTCCTTAACGCTCCTGACGAGTTTTACTAC 117
Query 138 GATTGCTTACCGATTCGTTCCAATTCCCA---TCAACCTTCGTCTCTCTTACGGCGGCGA 194
|||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 118 GATTGCTTGCCGATTCGTTCCAATTCCCACCGTCAACATTCGTCTCTCTTACGGCGGCGA 177
Query 195 AAGTCGGCACATCGCCGGGATTTAATTTCGTCCGATATTGAAACGGAGCCATCTTCTTCT 254
||| ||||||||||||||| | || | | |||||||||||||| |||||||||
Sbjct 178 AAGCCGGCACATCGCCGGG-----A-TT--T--G--ATTGAAACGGAGCCGTCTTCTTCT 225
Query 255 TCCGATGGATTTGATGTCGGTGAGAAATCCAGCTATGTGGAAAAGAACG-CTGAGCTTAG 313
|||||||||||||| |||||||||||||| ||||||||||||||||||| | |||||||
Sbjct 226 TCCGATGGATTTGAAGTCGGTGAGAAATCGAGCTATGTGGAAAAGAACGAC-GAGCTTA- 283
Query 314 A-GGGGATATTGATACAAGCGACGTAATTGAATCAACTAAGGACTCAATTGATCTATCTT 372
| |||||| |||| ||||||||||||||||||||||| |||||| |||||| ||||||||
Sbjct 284 ATGGGGATTTTGAAACAAGCGACGTAATTGAATCAACCAAGGACCCAATTGCTCTATCTT 343
Query 373 CAGAAAAGGAGAACGATTTGGATGTAATTAG-TTCGTCTGG-GA--AT---------GAT 419
||||||| ||||||||||||||||||||| | ||| ||||| || || |||
Sbjct 344 CAGAAAAAGAGAACGATTTGGATGTAATT-GATTCTTCTGGAGAGGATAAAGGGAGAGAT 402
Query 420 ATGGATGTAATTGATTCGGGTC-GGAACCGGGTTGACCCGTTTCAGGAAGAATCCACGGT 478
||||||||||||| ||||| || || ||||||||||||||||||||||||||||||||||
Sbjct 403 ATGGATGTAATTGTTTCGGTTCAGG-ACCGGGTTGACCCGTTTCAGGAAGAATCCACGGT 461
Query 479 GACTACCGTGAGCAGCGATGATCAAGGAGACGACGACTACGCCGGATCGGTACCACAG-T 537
||| ||||||||| ||||||| | ||||||||||| || ||||| ||||||||| |
Sbjct 462 GACCACCGTGAGCGGCGATGAACGAGGAGACGACG----CG--GGATCCGTACCACAGCT 515
Query 538 TTCGGGAGCCACCTAATTCCACTGAGTGGTCTCTCCTTGGGTTTTTGGTTGGGCTAGTGA 597
|| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 516 TT-GGGAACCACCTAATTCCACTGAGTGGTCTCTTTTTGGGTTTTTGGTTGGGCTAGTGA 574
Query 598 TCAAAGCAATCGAATTTCAAGTCAGTTTCATGACAAGCTTACTCACATTTCCTCCATGGC 657
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 575 TCAAAGCAATCGAATTTCAAGTCAGTTTGATGACAAGCTTACTCACATTTCCTCCATGG- 633
Query 658 TT-CTCCGTAACTGTTTTCTCTTCTTTTTCGATCCCTTTAGCACGATTAGGTTTGGCAGA 716
|| |||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 634 TTGCTCCGTTACTGTTTTCTCTTCTTTTTTGATCCCTTTAGCACAATTAGGTTTGGCAGA 693
Query 717 CGCTTTTTAATGGCAAGAGTAGCAGGAATAAGTGATATGATCTTTGGTTATATGAATCCT 776
|||||| ||||||||||||| ||||| ||||||||||||||||||||| ||||||||||
Sbjct 694 CGCTTTCTAATGGCAAGAGTTGCAGGGATAAGTGATATGATCTTTGGTAATATGAATCCA 753
Query 777 TTTAGGTTAAAAGATACAAAACAAATGTTGAGTATTGTGTGCAAGTTTGGTTGGGGTATG 836
||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 754 TTTAGGTTAAACGATACCAAACAAATGTTGAGTATTGTGTGCAAATTTGGTTGGGGTATG 813
Query 837 TTTTGGGCTGTTTATGTAGGCATTGTGTTGTTTGGCTTGTTGGTTTCGTCGCTTATGATT 896
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 814 TTTTGGGCTGTTTATGTAGGCATTGTGTTGTTTGGCTTGTTGGTTTCGTCCCTTATGATT 873
Query 897 GGTGGTTATGTGATTAACCGTATAGCGGATAAACCATTTGAGGTCAAGGAGACCTTGAAT 956
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 874 GGTGGTTATGTGATAAACCGTATAGCGGATAAACCATTTGAGGTCAAGGAGACCTTGAAT 933
Query 957 TTTGATTACACCAAGAATAGTCCAGAAGCATATGTGCCCATATCCTCGTGTGCTGGTGTT 1016
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 934 TTTGATTACACCAAGAATAGTCCAGAAGCATATGTGCCCATAACCTCGTGTGCTGGTGTT 993
Query 1017 GAATGTGAGGGAAGTTGCAAGGAAAGTAATGAAATGTCGAAGATCAGGGGTTTGCGAGTT 1076
|| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 994 GATTGTGAGGGAAGTTGCAAGGAAAGTAATGAAATGTCGAAGATCAGAGGCTTGCGAGTT 1053
Query 1077 ATCCCTCGAGACCAGAAGTTAGATATCATTCTTTCAATGACATTACCTGAGTCTGCGTAC 1136
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1054 ATCCCTCGAGACCAGAAGTTAAATATCATTCTTTCAATGACATTACCTGAGTCTGCGTAC 1113
Query 1137 AATAAAAATCTCGGCATGTTTCAGGTTCGGGTGGACTTCTTATCTGTGGATGGTCAAACG 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1114 AATAAAAATCTCGGCATGTTTCAGGTTCGGGTGGACTTCTTATCTGTGGATGGTCAAACG 1173
Query 1197 ATTGCTAGTATAAGGCGTCCGTGCATGTTAAGATTCAGAAGTGAGCCTATTCGTCTTGTT 1256
||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||
Sbjct 1174 ATTGCTAGTATAAGGCGTCCGTGCATGCTAAGATTCAGAAGCGAGCCTATCCGTCTTGTT 1233
Query 1257 CAGACATTCTTCAAAGTGGTTCCGTTAGTGACAGGATATGTCTCTGAGATCCAAACCTTG 1316
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1234 CAGACATTCTTCAAAATGGTTCCGTTAGTGACAGGATATGTCTCTGAGATCCAAACTTTG 1293
Query 1317 AGCTTGAAGTTGAAAGGCTTTGTAGAAAAGGACATTCCCACTGCTTGCTTAAAGATAATA 1376
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1294 AGCTTGAAGTTGAAAGGCTTTGTAGAAAAGGAAATTCCCACTGCTTGCTTAAAGATAATT 1353
Query 1377 ATCGAACAACGGGCAGAATTTCGACCCGGAGCAGGTATTCCAGAGCTGTACGATGCATCC 1436
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1354 ATTGAACAACGGGCAGAATTTCGACCCGGAGCAGGTATTCCAGAGCTGTACGATGCATCC 1413
Query 1437 CTATCGGTTGAATCCGGTCTTCCCTTCTTCAGAAAAATTATATGGAAATGGCGGAAGACT 1496
|| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1414 CTGTCGGTTGAATCCGGTCTTCCCTTCTTCAGAAAAGTTATATGGAAATGGCGGAAAACT 1473
Query 1497 TTGTTCGTCTGGATCAGCATGAGTTTGTTCATTACGGAATTGCTTTTCACGTTGGTTTGT 1556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1474 TTGTTCGTCTGGATCAGCATGAGTTTGTTCATTACGGAATTGCTTTTCACGTTGGTTTGT 1533
Query 1557 TGTAGACCTCTTATCATCCCAAGAACACAACCTAGAGACAGATCGCCTTCAAACCCAACT 1616
|| || ||||||||||||||||||| || |||||||||||| ||||||||||||||
Sbjct 1534 TGCAGTCCTCTTATCATCCCAAGAAGACGACCTAGAGACAGTTCGCCTTCAAACCC---- 1589
Query 1617 GGAGTCTGGAGGTAGATTATGAATCAAC-AGTTACTGTACATC 1658
| | ||||||||||||||||||||||| | ||||||||||||
Sbjct 1590 G-A--CTGGAGGTAGATTATGAATCAACGA-TTACTGTACATC 1628
> Ahg482394 jgi|Araly1|482394|fgenesh2_kg.4__1454__AT2G34380.1
Length=1691
Score = 505 bits (273), Expect = 6e-142
Identities = 616/775 (79%), Gaps = 50/775 (6%)
Strand=Plus/Plus
Query 828 TGGGGTATGTTTTGGGCTGTTTATGTAGGCATTGTGTTGTTTGGCTTGTTGGTTTCGT-C 886
|||||| ||||||| ||||||||||| || || |||||||| |||||||||||| | |
Sbjct 686 TGGGGTTTGTTTTGTGCTGTTTATGTGGGGATCATGTTGTTTACCTTGTTGGTTTC-TGC 744
Query 887 GCTTATGATTGGTGGTTATGTGATTAAC-CGTATAGCGGATAAACCATTTG-AGGTCAAG 944
| |||||||| |||||| ||||||| || | | | || || ||||| ||| | |||||
Sbjct 745 GTTTATGATTAGTGGTTTTGTGATT-ACTCATTTGGCTCATGAACCACTTGTA-ATCAAG 802
Query 945 GAGACCTTGAATTTTGATTACACCAAGAATAGTCCAGAAGCATATGTGCCCATATCCTCG 1004
|||| |||||||||||||| ||||||| |||||||||||| ||||| |||||| ||
Sbjct 803 GAGAGTTTGAATTTTGATTATACCAAGAGTAGTCCAGAAGCTTATGTCCCCATAAGTTCA 862
Query 1005 TGTGCTGGTGTTGAATGTGA-GGGAAGTTGCAAGGAAAGTAATGAAA-TGTCGAAGATCA 1062
||||||||| ||| | ||| | ||| ||||||| |||| ||||| | ||||||||
Sbjct 863 TGTGCTGGTATTGCCTTTGATTTG-AGTGGCAAGGAGAGTATTGAAACCG-GGAAGATCA 920
Query 1063 G-GGGTTTGCGAGTTATCCCTCGAGACCAGAAGTTAGATATCATTCTTTCAATGACATTA 1121
| ||| || || | | || ||| | ||| |||| | | || ||||||||
Sbjct 921 GAGGG-TT--GA---A------G-GA-CAG--GACAGAGATCACTGTCTCCATGACATTG 964
Query 1122 CCTGAGTCTGCGTACAATAAAAAT-CTCGGCATGTTTCAGGTTCGGGTGGACTTCTTATC 1180
|||||||||| ||||||| | ||| || || |||||||||||||||||||||||||||||
Sbjct 965 CCTGAGTCTGAGTACAAT-AGAATCCTTGGGATGTTTCAGGTTCGGGTGGACTTCTTATC 1023
Query 1181 TGTG-GATGGTCAAACGATTGCTAGTAT-AAGGCGTCCGTGCATGTTAAGATTCAGAAGT 1238
| ||||||| | |||||||| | |||| | ||||| ||| ||||||| |||||
Sbjct 1024 CCCAAG-TGGTCAATTGCTTGCTAGT-TCAAGGAGGCCGTGTATGGTAAGATTTAGAAGC 1081
Query 1239 GAGCCTATTCGTCTTGTTCAGACATT-CTTCAAAG-TGGTTCCG-TTAGTGACAGGATAT 1295
|||||||| |||||||| ||||| || || |||| | | |||| || || ||||| |||
Sbjct 1082 GAGCCTATCCGTCTTGTCCAGACTTTGCT--AAAGATTGCTCCGCTT-GTCACAGGCTAT 1138
Query 1296 GTCTCTGAGATCCAAACCTTGAGCTTGAAG-TTGAAAGGCTTTGTAGAAAAGGACATTC- 1353
|||||||| || |||||||||| ||||||| || |||||||| || ||||||||||||
Sbjct 1139 GTCTCTGAAATTCAAACCTTGAACTTGAAGCTT-AAAGGCTTGGTCGAAAAGGACATTAT 1197
Query 1354 -CC-ACTGCTTGCTTAAAGATAATAATCGAACAACGGGCAGAATTTCGACCCGGAGCAGG 1411
|| ||||||||||| ||| |||| || |||||||||||||| ||||| || ||||||||
Sbjct 1198 TCCTACTGCTTGCTTGAAGGTAATGATTGAACAACGGGCAGAGTTTCGTCCTGGAGCAGG 1257
Query 1412 TATTCCAGAGCTGTACGATGCATCCCTATCGGTTGAATCCGGTCTTCCCTTCTTCAGAAA 1471
|||||||||| | ||||||||||| || | | |||||||| ||||| ||||||| |||
Sbjct 1258 TATTCCAGAGATTTACGATGCATCTCTGTTGCTTGAATCCAAACTTCCTTTCTTCA-AAA 1316
Query 1472 A-ATTATATGGAAATGGCGGAAGACTTTGTTCGTCTGGATCAGCATGAGTTTGTTCATTA 1530
|| |||||||| ||| |||| ||||| || |||||||||||||||||||||||| |||
Sbjct 1317 GGATCATATGGAACTGGAGGAAAACTTTTTTTGTCTGGATCAGCATGAGTTTGTTCGTTA 1376
Query 1531 CGGAATTGCTTTTCA-CGTTGGTTTG-TTGTAGACCTCTTATCATCCCAAGAACA 1583
||||||||||||| | || |||| || |||||||| |||||||||||||||
Sbjct 1377 TGGAATTGCTTTTCGTC-TTAGTTTTCTTC-AGACCTCTGATCATCCCAAGAACA 1429
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69171884920
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5