BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G29770.1 Length=1226 Score E Sequences producing significant alignments: (Bits) Value Ahg473180 jgi|Araly1|473180|fgenesh2_kg.1__3134__AT1G29770.1 1869 0.0 Ahg473181 jgi|Araly1|473181|fgenesh2_kg.1__3135__AT1G29780.1 243 3e-63 > Ahg473180 jgi|Araly1|473180|fgenesh2_kg.1__3134__AT1G29770.1 Length=1217 Score = 1869 bits (1012), Expect = 0.0 Identities = 1155/1223 (94%), Gaps = 13/1223 (1%) Strand=Plus/Plus Query 11 AAAACTGTTATTTTACTAAAAATAACTCAG-AGCT-AATCACAACCTGAATAAACTGAAC 68 |||||||||||||| ||||||||||||||| | |||||| ||||||||||||||||| Sbjct 1 AAAACTGTTATTTTGCTAAAAATAACTCAGCTTATAAATCACGACCTGAATAAACTGAAC 60 Query 69 TCTACCAAATCAAGTCCTCTTCTGTTCCAAAGCCAGTAGCTTGGAAGTTAGAACCTTTAA 128 ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| Sbjct 61 TCTACCAAATCAAGTACTCTTCTGTTCCAAAGCCAGTAGCATGGAAGTTAGAACCTTTAA 120 Query 129 AGCATTATAAACATCTCACAATTTCTACAGGTTTCCATCTGAGCCAGCTGCACAAAAGAA 188 ||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||| Sbjct 121 AGCATTATAAACATCTCACCATTTCTCCAGGTTTCCATCTGAGCCAGCTGCAGAAAAGAA 180 Query 189 CCCGGAATTC-TCATCAACGTTTTGAACTCTGATTTCTTGATAATGGCGTGTCATGGATT 247 |||||||||| | | |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 181 CCCGGAATTCTTTA-CAACGTTTTGAACTCTGATTTCTTGATAATGGCGTGCCATGGATT 239 Query 248 TCTGGGGAAACCGACGCCGAAATCATTTGGGCGTCATCATAAACATGCAAGGAAAAACCG 307 ||||||||||||||| || |||||||||||||| ||||||||||||| ||| ||||| Sbjct 240 TCTGGGGAAACCGACCCCAAAATCATTTGGGCG---TCATAAACATGCATGGAGAAACC- 295 Query 308 GA-ATCATCAATCCAGATGTTTGGCTGCAGCCGTTGCAGCAGCTGGCTCCATCTTCACAT 366 || |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct 296 GACATCATCAATCCAGATGTTCGGCTGCGGCCGTTGCAGCAGCTGGCTCCATCTTCACAT 355 Query 367 CCCTCAACATGTCTATCTTCACATTCCACAACCGCCTCTTGCGTTGCGTCTCCAGGTTTT 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 356 CCCTCAACATGTCTATCTTCACATTCCACAACCGCCTCTTGCGTTGCGTCTCCAGGTTTT 415 Query 427 TGCGTCTCGCCACCACATCTAGCGCAACTCCTACCCGTCGACCCACCATGAAACAAGGCT 486 | ||||| ||||||||||||||||||||||||| || |||| |||||||||||||||||| Sbjct 416 TCCGTCTAGCCACCACATCTAGCGCAACTCCTAGCCATCGAGCCACCATGAAACAAGGCT 475 Query 487 ACAAAAAACTCCATAAACGC-GAGCCTCTGATAAGACGTAATGACAAGAAAAGGACAATC 545 ||||||| ||||| |||| | |||||||||| |||||||||||||||||||||||| ||| Sbjct 476 ACAAAAAGCTCCAGAAAC-CTGAGCCTCTGAGAAGACGTAATGACAAGAAAAGGACGATC 534 Query 546 TTTCTTGATCTTGACGAAACATTGGTACATTCAACGATGGAACCACCAATCCGGGTTAAT 605 |||||||||||||| ||||||||||| || || || |||||||||||||||||||||||| Sbjct 535 TTTCTTGATCTTGATGAAACATTGGTGCACTCTACAATGGAACCACCAATCCGGGTTAAT 594 Query 606 GTAGATTTCATGGTGAGGATAAAGATCGAAGGAGCCGTTATACCAATGTTTGTGGTAAAA 665 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 595 GTAGATTTCATGGTGAGGATAAAGATCGAAGGAGCCGTTATACCAATGTTTGTGGTGAAA 654 Query 666 CGACCAGGAGTTACTGAGTTTCTTGAAAGGATCAGTAAGAACTATCGAGTGGCAATCTTC 725 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 655 CGACCAGGAGTTACTGAGTTTCTTGAAAGGATTAGTAAGAACTATCGAGTGGCAATCTTC 714 Query 726 ACAGCCGGGTTACCGGAATATGCTTCACAGGTTTTGGATAAACTTGACAAGAATCGTGTG 785 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 715 ACAGCCGGGTTACCGGAATATGCTTCACAGGTTTTGGATAAACTTGACAAGAACCGTGTG 774 Query 786 ATCTCACAGCGGCTATATCGAGATTCATGCACAGAAGTGAATGGAAGATATGCCAAAGAC 845 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 775 ATCTCACAGCGGCTATATCGAGATTCATGCACAGAAATGAATGGAAGATATGCCAAAGAC 834 Query 846 TTATCTTTGGTGGCGAAGAATGACCTCGGGAGTGTTTTGCTAGTTGACGATAACCCTTTC 905 |||||||||||||| || ||||||||||||||||||||| ||||||| |||||||||||| Sbjct 835 TTATCTTTGGTGGCAAAAAATGACCTCGGGAGTGTTTTGATAGTTGATGATAACCCTTTC 894 Query 906 TCCTACTCGTTGCAGCCAGACAATGGAGTTCCCATTAAGCCATTTATGGATGACATGGAA 965 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 895 TCCTACTCGTTGCAGCCAGACAATGGAGTTCCCATTAAGCCATTTGTGGATGACATGGAA 954 Query 966 GATCAAGAACTAATGAAGCTTGCAGAATTCTTCGATGGATGTTATCAGTACGAAGATCTA 1025 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 955 GATCAAGAACTGATGAAACTTGCAGAATTCTTCGATGGATGTTATCAGTACGAAGATCTA 1014 Query 1026 AGGGATGCAGCAGCAGAACTTCTATCCAGCAAGCTGATTTGATGCACATATATATGGAAT 1085 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1015 AGGGACGCAGCAGCAGAACTTCTATCCAGCAAGCTGATTTGATGCACATATATATGAAAT 1074 Query 1086 TTGTTTGCAGAACCTGTTTTCAATCTTTT-GGGATTCTTTCTATCTTTCTCTTGATCTTC 1144 |||||||||||||||||||||||| |||| |||||||||||| ||||| ||||||| ||| Sbjct 1075 TTGTTTGCAGAACCTGTTTTCAATTTTTTTGGGATTCTTTCTTTCTTTTTCTTGATTTTC 1134 Query 1145 TTTGGGGAGGGATGGTACAGAGTGACGGTATTTTTGTGTTGAAAAAGGATGCT-CCTTAT 1203 ||||||||| |||| ||||| | ||||||||||| ||||||||||||||||| |||||| Sbjct 1135 TTTGGGGAGAGATGATACAGCCTAACGGTATTTTTATGTTGAAAAAGGATGCTTCCTTAT 1194 Query 1204 CCTTCTTCAGCGTTTTTACCTAC 1226 ||||||||||||||||||||||| Sbjct 1195 CCTTCTTCAGCGTTTTTACCTAC 1217 > Ahg473181 jgi|Araly1|473181|fgenesh2_kg.1__3135__AT1G29780.1 Length=666 Score = 243 bits (131), Expect = 3e-63 Identities = 400/523 (76%), Gaps = 45/523 (9%) Strand=Plus/Plus Query 534 AAAAGGACAATCTTTCTTGATCTTGACGAAACATTGGTACATTCAACGATGGAACC-ACC 592 ||||| |||||| | || |||||||| ||||||||||| || ||||| | | || ||| Sbjct 145 AAAAGAACAATCATCCTCGATCTTGATGAAACATTGGTTCACTCAAC-A---ACCCAACC 200 Query 593 AATCC--GGGTT-AATGTAGATTTCATGGTGA-GGAT-AAAGATCG-AA-GGAGCCGTTA 645 ||| ||||| ||| | ||||||||||||| || | ||| || | || |||| | | Sbjct 201 --TCCGGGGGTTAAATAT-GATTTCATGGTGATGG-TGAAA-ATGGAAAGGGAG--ATAA 253 Query 646 TACCAATGTTTGTGGTAAAACGACCAGGAGTTACTGAGTTTCTT-GAAAGGA-TCAGT-A 702 | ||||| |||||||| ||||| || || || ||||| ||||| |||| || | || | Sbjct 254 TGCCAATCTTTGTGGTGAAACGTCCTGGTGTGACTGA-ATTCTTGGAAA-GACTTGGTGA 311 Query 703 AGAACTATCGA-GTGGCAATCTTCACAGCCGGGT-TACCGGAATATGCTTCACAGGTTTT 760 | ||||| | | |||| | | ||||||| | ||| | |||||||||||||||||||| Sbjct 312 A-AACTA-CAATGTGGTAGTTTTCACAG-CTGGTCTGGAAGAATATGCTTCACAGGTTTT 368 Query 761 GGATAAACTTGACAAGAATC-GTGTGA-TCTCACAGCGGCTATATCGAGATTCATGCACA 818 ||| || || |||||||| | |||| | ||||||||||||||||||||||||||||||| Sbjct 369 GGACAAGCTAGACAAGAA-CGGTGT-AGTCTCACAGCGGCTATATCGAGATTCATGCACG 426 Query 819 GAAGTGAATGG-AAGATATGCCAAAG-ACTTATCTTTGGTGGCGAAG-AATGACCTCGGG 875 ||||||| ||| || ||||| |||| ||||||||||||| | | | || |||||| | Sbjct 427 GAAGTGAGTGGGAA-ATATGT-AAAGGACTTATCTTTGGTAGT-AGGGAAAGACCTCAGA 483 Query 876 AGTGTTTTGCTAGTTGACGATAACCCTTTCTCCT-ACTCGTTGCAGCCAGACAATGGAGT 934 |||| |||| | || || || || || | || || |||| || |||||||| |||||||| Sbjct 484 AGTGCTTTGATTGTCGATGACAATCCAT-CTTCTTACTCATTACAGCCAGAGAATGGAGT 542 Query 935 TCCCATTAAGCCATTTATGGATGACATGGAAG-ATCAAGAACTAATGAAGCTTGCAGAAT 993 || || ||| | ||| | |||||| || ||| |||||||||| |||| |||| || | Sbjct 543 GCCTATAAAGGCTTTTGTCGATGACCTG-AAGGATCAAGAACTGCTGAATCTTGTGGAGT 601 Query 994 TCTTCGATGGATGTTAT-CAGTACGAAGATCTAAGGGATGCAG 1035 || |||| | ||||| || || || ||| | |||||||||| Sbjct 602 TCCTCGAAAGTTGTTACGCA-TATGAGGATATGAGGGATGCAG 643 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45785623317 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5