BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29770.1
Length=1226
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473180 jgi|Araly1|473180|fgenesh2_kg.1__3134__AT1G29770.1 1869 0.0
Ahg473181 jgi|Araly1|473181|fgenesh2_kg.1__3135__AT1G29780.1 243 3e-63
> Ahg473180 jgi|Araly1|473180|fgenesh2_kg.1__3134__AT1G29770.1
Length=1217
Score = 1869 bits (1012), Expect = 0.0
Identities = 1155/1223 (94%), Gaps = 13/1223 (1%)
Strand=Plus/Plus
Query 11 AAAACTGTTATTTTACTAAAAATAACTCAG-AGCT-AATCACAACCTGAATAAACTGAAC 68
|||||||||||||| ||||||||||||||| | |||||| |||||||||||||||||
Sbjct 1 AAAACTGTTATTTTGCTAAAAATAACTCAGCTTATAAATCACGACCTGAATAAACTGAAC 60
Query 69 TCTACCAAATCAAGTCCTCTTCTGTTCCAAAGCCAGTAGCTTGGAAGTTAGAACCTTTAA 128
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 61 TCTACCAAATCAAGTACTCTTCTGTTCCAAAGCCAGTAGCATGGAAGTTAGAACCTTTAA 120
Query 129 AGCATTATAAACATCTCACAATTTCTACAGGTTTCCATCTGAGCCAGCTGCACAAAAGAA 188
||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||
Sbjct 121 AGCATTATAAACATCTCACCATTTCTCCAGGTTTCCATCTGAGCCAGCTGCAGAAAAGAA 180
Query 189 CCCGGAATTC-TCATCAACGTTTTGAACTCTGATTTCTTGATAATGGCGTGTCATGGATT 247
|||||||||| | | |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 181 CCCGGAATTCTTTA-CAACGTTTTGAACTCTGATTTCTTGATAATGGCGTGCCATGGATT 239
Query 248 TCTGGGGAAACCGACGCCGAAATCATTTGGGCGTCATCATAAACATGCAAGGAAAAACCG 307
||||||||||||||| || |||||||||||||| ||||||||||||| ||| |||||
Sbjct 240 TCTGGGGAAACCGACCCCAAAATCATTTGGGCG---TCATAAACATGCATGGAGAAACC- 295
Query 308 GA-ATCATCAATCCAGATGTTTGGCTGCAGCCGTTGCAGCAGCTGGCTCCATCTTCACAT 366
|| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 296 GACATCATCAATCCAGATGTTCGGCTGCGGCCGTTGCAGCAGCTGGCTCCATCTTCACAT 355
Query 367 CCCTCAACATGTCTATCTTCACATTCCACAACCGCCTCTTGCGTTGCGTCTCCAGGTTTT 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 CCCTCAACATGTCTATCTTCACATTCCACAACCGCCTCTTGCGTTGCGTCTCCAGGTTTT 415
Query 427 TGCGTCTCGCCACCACATCTAGCGCAACTCCTACCCGTCGACCCACCATGAAACAAGGCT 486
| ||||| ||||||||||||||||||||||||| || |||| ||||||||||||||||||
Sbjct 416 TCCGTCTAGCCACCACATCTAGCGCAACTCCTAGCCATCGAGCCACCATGAAACAAGGCT 475
Query 487 ACAAAAAACTCCATAAACGC-GAGCCTCTGATAAGACGTAATGACAAGAAAAGGACAATC 545
||||||| ||||| |||| | |||||||||| |||||||||||||||||||||||| |||
Sbjct 476 ACAAAAAGCTCCAGAAAC-CTGAGCCTCTGAGAAGACGTAATGACAAGAAAAGGACGATC 534
Query 546 TTTCTTGATCTTGACGAAACATTGGTACATTCAACGATGGAACCACCAATCCGGGTTAAT 605
|||||||||||||| ||||||||||| || || || ||||||||||||||||||||||||
Sbjct 535 TTTCTTGATCTTGATGAAACATTGGTGCACTCTACAATGGAACCACCAATCCGGGTTAAT 594
Query 606 GTAGATTTCATGGTGAGGATAAAGATCGAAGGAGCCGTTATACCAATGTTTGTGGTAAAA 665
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 595 GTAGATTTCATGGTGAGGATAAAGATCGAAGGAGCCGTTATACCAATGTTTGTGGTGAAA 654
Query 666 CGACCAGGAGTTACTGAGTTTCTTGAAAGGATCAGTAAGAACTATCGAGTGGCAATCTTC 725
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 655 CGACCAGGAGTTACTGAGTTTCTTGAAAGGATTAGTAAGAACTATCGAGTGGCAATCTTC 714
Query 726 ACAGCCGGGTTACCGGAATATGCTTCACAGGTTTTGGATAAACTTGACAAGAATCGTGTG 785
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 715 ACAGCCGGGTTACCGGAATATGCTTCACAGGTTTTGGATAAACTTGACAAGAACCGTGTG 774
Query 786 ATCTCACAGCGGCTATATCGAGATTCATGCACAGAAGTGAATGGAAGATATGCCAAAGAC 845
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 775 ATCTCACAGCGGCTATATCGAGATTCATGCACAGAAATGAATGGAAGATATGCCAAAGAC 834
Query 846 TTATCTTTGGTGGCGAAGAATGACCTCGGGAGTGTTTTGCTAGTTGACGATAACCCTTTC 905
|||||||||||||| || ||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 835 TTATCTTTGGTGGCAAAAAATGACCTCGGGAGTGTTTTGATAGTTGATGATAACCCTTTC 894
Query 906 TCCTACTCGTTGCAGCCAGACAATGGAGTTCCCATTAAGCCATTTATGGATGACATGGAA 965
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 895 TCCTACTCGTTGCAGCCAGACAATGGAGTTCCCATTAAGCCATTTGTGGATGACATGGAA 954
Query 966 GATCAAGAACTAATGAAGCTTGCAGAATTCTTCGATGGATGTTATCAGTACGAAGATCTA 1025
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 GATCAAGAACTGATGAAACTTGCAGAATTCTTCGATGGATGTTATCAGTACGAAGATCTA 1014
Query 1026 AGGGATGCAGCAGCAGAACTTCTATCCAGCAAGCTGATTTGATGCACATATATATGGAAT 1085
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1015 AGGGACGCAGCAGCAGAACTTCTATCCAGCAAGCTGATTTGATGCACATATATATGAAAT 1074
Query 1086 TTGTTTGCAGAACCTGTTTTCAATCTTTT-GGGATTCTTTCTATCTTTCTCTTGATCTTC 1144
|||||||||||||||||||||||| |||| |||||||||||| ||||| ||||||| |||
Sbjct 1075 TTGTTTGCAGAACCTGTTTTCAATTTTTTTGGGATTCTTTCTTTCTTTTTCTTGATTTTC 1134
Query 1145 TTTGGGGAGGGATGGTACAGAGTGACGGTATTTTTGTGTTGAAAAAGGATGCT-CCTTAT 1203
||||||||| |||| ||||| | ||||||||||| ||||||||||||||||| ||||||
Sbjct 1135 TTTGGGGAGAGATGATACAGCCTAACGGTATTTTTATGTTGAAAAAGGATGCTTCCTTAT 1194
Query 1204 CCTTCTTCAGCGTTTTTACCTAC 1226
|||||||||||||||||||||||
Sbjct 1195 CCTTCTTCAGCGTTTTTACCTAC 1217
> Ahg473181 jgi|Araly1|473181|fgenesh2_kg.1__3135__AT1G29780.1
Length=666
Score = 243 bits (131), Expect = 3e-63
Identities = 400/523 (76%), Gaps = 45/523 (9%)
Strand=Plus/Plus
Query 534 AAAAGGACAATCTTTCTTGATCTTGACGAAACATTGGTACATTCAACGATGGAACC-ACC 592
||||| |||||| | || |||||||| ||||||||||| || ||||| | | || |||
Sbjct 145 AAAAGAACAATCATCCTCGATCTTGATGAAACATTGGTTCACTCAAC-A---ACCCAACC 200
Query 593 AATCC--GGGTT-AATGTAGATTTCATGGTGA-GGAT-AAAGATCG-AA-GGAGCCGTTA 645
||| ||||| ||| | ||||||||||||| || | ||| || | || |||| | |
Sbjct 201 --TCCGGGGGTTAAATAT-GATTTCATGGTGATGG-TGAAA-ATGGAAAGGGAG--ATAA 253
Query 646 TACCAATGTTTGTGGTAAAACGACCAGGAGTTACTGAGTTTCTT-GAAAGGA-TCAGT-A 702
| ||||| |||||||| ||||| || || || ||||| ||||| |||| || | || |
Sbjct 254 TGCCAATCTTTGTGGTGAAACGTCCTGGTGTGACTGA-ATTCTTGGAAA-GACTTGGTGA 311
Query 703 AGAACTATCGA-GTGGCAATCTTCACAGCCGGGT-TACCGGAATATGCTTCACAGGTTTT 760
| ||||| | | |||| | | ||||||| | ||| | ||||||||||||||||||||
Sbjct 312 A-AACTA-CAATGTGGTAGTTTTCACAG-CTGGTCTGGAAGAATATGCTTCACAGGTTTT 368
Query 761 GGATAAACTTGACAAGAATC-GTGTGA-TCTCACAGCGGCTATATCGAGATTCATGCACA 818
||| || || |||||||| | |||| | |||||||||||||||||||||||||||||||
Sbjct 369 GGACAAGCTAGACAAGAA-CGGTGT-AGTCTCACAGCGGCTATATCGAGATTCATGCACG 426
Query 819 GAAGTGAATGG-AAGATATGCCAAAG-ACTTATCTTTGGTGGCGAAG-AATGACCTCGGG 875
||||||| ||| || ||||| |||| ||||||||||||| | | | || |||||| |
Sbjct 427 GAAGTGAGTGGGAA-ATATGT-AAAGGACTTATCTTTGGTAGT-AGGGAAAGACCTCAGA 483
Query 876 AGTGTTTTGCTAGTTGACGATAACCCTTTCTCCT-ACTCGTTGCAGCCAGACAATGGAGT 934
|||| |||| | || || || || || | || || |||| || |||||||| ||||||||
Sbjct 484 AGTGCTTTGATTGTCGATGACAATCCAT-CTTCTTACTCATTACAGCCAGAGAATGGAGT 542
Query 935 TCCCATTAAGCCATTTATGGATGACATGGAAG-ATCAAGAACTAATGAAGCTTGCAGAAT 993
|| || ||| | ||| | |||||| || ||| |||||||||| |||| |||| || |
Sbjct 543 GCCTATAAAGGCTTTTGTCGATGACCTG-AAGGATCAAGAACTGCTGAATCTTGTGGAGT 601
Query 994 TCTTCGATGGATGTTAT-CAGTACGAAGATCTAAGGGATGCAG 1035
|| |||| | ||||| || || || ||| | ||||||||||
Sbjct 602 TCCTCGAAAGTTGTTACGCA-TATGAGGATATGAGGGATGCAG 643
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45785623317
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5