BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29780.1
Length=666
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473181 jgi|Araly1|473181|fgenesh2_kg.1__3135__AT1G29780.1 1014 0.0
Ahg473180 jgi|Araly1|473180|fgenesh2_kg.1__3134__AT1G29770.1 268 3e-71
> Ahg473181 jgi|Araly1|473181|fgenesh2_kg.1__3135__AT1G29780.1
Length=666
Score = 1014 bits (549), Expect = 0.0
Identities = 628/667 (94%), Gaps = 2/667 (0%)
Strand=Plus/Plus
Query 1 ATGTCCATCTTGAAGTTTCATTGTCGCCTTCTGCGTTGTGTTTCCAGGTGCTTCACGGGC 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||| || | |
Sbjct 1 ATGTCCATCTTGAAGTTTCATTGCCGCCTTCTGCGTTGTGTTTCCAGGTGCTTTACAGCC 60
Query 61 ATCACCATCAGCTATCCAGCCACAAAACATGGCTATACAAAATTTGAGAAACTCGAGGAC 120
| ||||||||||||||||||||||||||||| | ||||||| |||| |||||| |||||
Sbjct 61 ACCACCATCAGCTATCCAGCCACAAAACATGATTTTACAAAACTTGACAAACTCAAGGAC 120
Query 121 CCTCTGACAGGATATACCAACATGAAAAGGACAATCATCCTCGATCTTGATGAAACGTTG 180
|||||||||| |||||||| || ||||| |||||||||||||||||||||||||| |||
Sbjct 121 CCTCTGACAGAATATACCACCACAAAAAGAACAATCATCCTCGATCTTGATGAAACATTG 180
Query 181 GTTCACGCAACAACACATCTTCCGGGAGTTAAACATGATTTCATGGTGATGGTGAAAATG 240
|||||| ||||||| || | |||||| |||||| ||||||||||||||||||||||||||
Sbjct 181 GTTCACTCAACAACCCAACCTCCGGGGGTTAAATATGATTTCATGGTGATGGTGAAAATG 240
Query 241 GAAAGGGAGATAATGCCAATCTTTGTGGTGAAACGTCCTGGTGTGACTGAATTCTTGGAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAAAGGGAGATAATGCCAATCTTTGTGGTGAAACGTCCTGGTGTGACTGAATTCTTGGAA 300
Query 301 AGACTTGGTGAAAACTACAAAGTGGTAGTTTTCACAGCTGGTCTGGAAGAATATGCTTCA 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGACTTGGTGAAAACTACAATGTGGTAGTTTTCACAGCTGGTCTGGAAGAATATGCTTCA 360
Query 361 CAGGTTTTGGACAAGCTAGACAAGAACGGTGT-GATCTCACAGCGGCTATATCGAGACTC 419
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||
Sbjct 361 CAGGTTTTGGACAAGCTAGACAAGAACGGTGTAG-TCTCACAGCGGCTATATCGAGATTC 419
Query 420 ATGCACGGAGGTGAACGGGAAATATGTAAAGGACTTATCTTTGGTAGTGGGGAAAGACCT 479
||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 420 ATGCACGGAAGTGAGTGGGAAATATGTAAAGGACTTATCTTTGGTAGTAGGGAAAGACCT 479
Query 480 CAGAAGTGCTTTGATTGTCGATGACAATCCATCTTCTTACTCATTACAGCCAGAGAATGG 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CAGAAGTGCTTTGATTGTCGATGACAATCCATCTTCTTACTCATTACAGCCAGAGAATGG 539
Query 540 AGTGCCTATAAAGGCTTTTGTGGATGACCTGAAAGATCAAGAACTGTTGAATCTTGTGGA 599
||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||
Sbjct 540 AGTGCCTATAAAGGCTTTTGTCGATGACCTGAAGGATCAAGAACTGCTGAATCTTGTGGA 599
Query 600 GTTTCTCGAAAGCTGTTACGCATATGAAGATATGAGGGATGCAGTCACGGATTTGCTCGC 659
||| |||||||| |||||||||||||| ||||||||||||||||||| ||||||||| ||
Sbjct 600 GTTCCTCGAAAGTTGTTACGCATATGAGGATATGAGGGATGCAGTCAAGGATTTGCTGGC 659
Query 660 AAACTAG 666
|||||||
Sbjct 660 AAACTAG 666
> Ahg473180 jgi|Araly1|473180|fgenesh2_kg.1__3134__AT1G29770.1
Length=1217
Score = 268 bits (145), Expect = 3e-71
Identities = 406/526 (77%), Gaps = 41/526 (8%)
Strand=Plus/Plus
Query 140 ACATGAAAAGGACAATCATCCTCGATCTTGATGAAACGTTGGTTCACGCAACAA---CA- 195
||| ||||||||| ||| | || |||||||||||||| ||||| ||| | |||| |
Sbjct 518 ACAAGAAAAGGACGATCTTTCTTGATCTTGATGAAACATTGGTGCACTCTACAATGGAAC 577
Query 196 CATC-TTCCGGGAGTTAAACAT-GATTTCATGGTGATGG-TGAAA-ATGGAAAGGGAG-- 249
|| | ||| || ||| || | ||||||||||||| || | ||| || | || ||||
Sbjct 578 CACCAATCC-GG-GTT-AATGTAGATTTCATGGTGA-GGAT-AAAGATCG-AA-GGAGCC 630
Query 250 ATAATGCCAATCTTTGTGGTGAAACGTCCTGGTGTGACTGA-ATTCTTGGAAA-GACTTG 307
| || ||||| |||||||||||||| || || || ||||| ||||| |||| || ||
Sbjct 631 GTTATACCAATGTTTGTGGTGAAACGACCAGGAGTTACTGAGTTTCTT-GAAAGGA-TTA 688
Query 308 GTGAA-AACTA-CAAAGTGGTAGTTTTCACAG-CTGGTCTGGAAGAATATGCTTCACAGG 364
|| || ||||| | ||||| | | ||||||| | ||| | ||||||||||||||||
Sbjct 689 GT-AAGAACTATC-GAGTGGCAATCTTCACAGCCGGGT-TACCGGAATATGCTTCACAGG 745
Query 365 TTTTGGACAAGCTAGACAAGAACGGTGTGATCTCACAGCGGCTATATCGAGACTCATGCA 424
||||||| || || ||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 746 TTTTGGATAAACTTGACAAGAACCGTGTGATCTCACAGCGGCTATATCGAGATTCATGCA 805
Query 425 CGGAGGTGAACGGGAA-ATATGT-AAAGGACTTATCTTTGGTAGTGGGGAAA--GACCTC 480
| || |||| || || ||||| |||| ||||||||||||| | | ||| ||||||
Sbjct 806 CAGAAATGAATGG-AAGATATGCCAAAG-ACTTATCTTTGGT-G-GCAAAAAATGACCTC 861
Query 481 AGAAGTGCTTTGATTGTCGATGACAATCCAT-CTTCTTACTCATTACAGCCAGAGAATGG 539
| |||| |||||| || ||||| || || | || || |||| || |||||||| |||||
Sbjct 862 GGGAGTGTTTTGATAGTTGATGATAACCCTTTCTCCT-ACTCGTTGCAGCCAGACAATGG 920
Query 540 AGTGCCTATAAAGGCTTTTGTGGATGACCTGAAAGATCAAGAACTGTTGAATCTTGTGGA 599
||| || || ||| | |||||||||||| || |||||||||||||| |||| |||| ||
Sbjct 921 AGTTCCCATTAAGCCATTTGTGGATGACATGGAAGATCAAGAACTGATGAAACTTGCAGA 980
Query 600 GTTTCT-CGAAAGCTGTTACGCA-TATGAAGATATGAGGGATGCAG 643
|| || ||| | ||||| || || |||||| | ||||| ||||
Sbjct 981 ATT-CTTCGATGGATGTTAT-CAGTACGAAGATCTAAGGGACGCAG 1024
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24436789797
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5