BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G29785.1

Length=625
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg473182 jgi|Araly1|473182|fgenesh2_kg.1__3136__AT1G29785.2         551    2e-156


> Ahg473182 jgi|Araly1|473182|fgenesh2_kg.1__3136__AT1G29785.2
Length=490

 Score =  551 bits (298),  Expect = 2e-156
 Identities = 320/331 (97%), Gaps = 0/331 (0%)
 Strand=Plus/Plus

Query  73   CTGTGTCAATGCCGGAATCTAGCTCAAGcttctcgtctctctttcttctactcatcatct  132
            ||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||
Sbjct  1    CTGTGTCAATGCCGGAATCAAGCTCAAGCTTCTCGTCTCTCTTTCTCCTACTCACCATCT  60

Query  133  tcttcctccttttactctctccatcgctttcttctccCGAATCTGAAGTTCATGTTTTGG  192
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  61   TCTTCCTCCTTTTACTCTCTCCATCGCTTTCTTCTGCCGAATCTGAAGTTCATGTTTTGG  120

Query  193  ATCGTGAGCTGTTAGAGATCCAGACGAATCCGAAGCCGGGCAAGACTAATAGGAAACTCA  252
            ||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||
Sbjct  121  ATCGTGAGCTGTTAGAGATCCAGAAAAATCCGAAGCCGGTCAAGACTAATAGGAAACTCA  180

Query  253  AGTGCTGCGAGATGCGGAGCAGATCTCAGTGTTCGGCTTTCCCTAGATGCAGGTGGTGTC  312
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  AGTGCTGCGAGATGCGGAGCAGATCTCAGTGTTCGGCTTTCCCTAGATGCAGGTGGTGTC  240

Query  313  GTAGTGAAGCTCTTGATGACTTGTGCTTCAGTAAAGCTGAAGCCTTGCGACTTCCAAGTC  372
            ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  241  GTAGTGAAGCTCTCGATGACTTGTGCTTTAGTAAAGCTGAAGCCTTGCGACTTCCAAGTC  300

Query  373  AAGTCTTCCTTTGTGAATTATGAATTAACAG  403
            |||||||| | ||||||||||||||||||||
Sbjct  301  AAGTCTTCGTCTGTGAATTATGAATTAACAG  331



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22873750200


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5