BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29790.1
Length=1599
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473184 jgi|Araly1|473184|fgenesh2_kg.1__3138__AT1G29790.1 2248 0.0
> Ahg473184 jgi|Araly1|473184|fgenesh2_kg.1__3138__AT1G29790.1
Length=1542
Score = 2248 bits (1217), Expect = 0.0
Identities = 1428/1528 (93%), Gaps = 21/1528 (1%)
Strand=Plus/Plus
Query 46 AAAAATGGCGGGATTCACCATGAGCTTGAACTTGCTTCTACTAGTAGCAATGGTAGCTAC 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 26 AAAAATGGCGGGATTCACCATGAGCTTGAACTTGCTTCTACTAGTAGCAATGGTAGCTAC 85
Query 106 AAACATCCTCTCACTCTACCACCTCTCCTCCACCACAAATTTCTTCCAATCCACCGTCAA 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 86 AAACATCCTCTCACTCTACCACCTCTCCTCCACCACAAATTTCTTCCAATCCACCGTCAA 145
Query 166 ATCCTCACAATCCTCTGTTCCCACAGTTCCCGATCACCTCCTCCGTCAGCTCCACACTAT 225
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 146 ATCCACACAATCCTCTGTTCCCACAGTTCCCGATCACCTCCTCCGTCAGCTCCACACAAT 205
Query 226 CCGCGCCGCTATTAACCACCTCACAACTCACCAACCAGACAAATCAACTTCAACCTCGA- 284
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 206 CCGCGCCGCTATTAACCACCTCACAACTCACCAACCAGACAAATCAACTTCAACCTT-AT 264
Query 285 CCTCACGCGCCGCCGTctcctcctcctcctcctccACCGCGCCTAAAGAGCTTTTAATCT 344
|||||||||||||||| ||||||||||| ||||||||| | || ||||||||| | ||||
Sbjct 265 CCTCACGCGCCGCCGTATCCTCCTCCTCGTCCTCCACCCCACCGAAAGAGCTTCTCATCT 324
Query 345 ACTCTAAGCTCTCACCTATAGCTTCAGCTTGTCATAACTACCCTGACCTTCTTCATGAGT 404
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 325 ACTCAAAGCTCTCACCTATAGCTTCAGCTTGTCATAACTACCCTGACCTTCTTCATGAGT 384
Query 405 ATATGAACTACACTCCTTTCTCTCTTTGTCCTTCTGACACCGATCTCGTCGAGAAACTCA 464
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
Sbjct 385 ATATGAACTACACTCCTTTCTCTCTTTGTCCTTCCGATACCGATCTCGTCGAGAAACTTA 444
Query 465 TCCTCCGTGGCTGCCACCCACTTCCTCGCCGTCGTTGCTTCTCACGAACGCCGCGAAATC 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TCCTCCGTGGCTGCCACCCACTTCCTCGCCGTCGTTGCTTCTCACGAACGCCGCGAAATC 504
Query 525 CTTCAGATTCGAAACCTGAATCTAATGTTCTCTGGTCTTACTACTCTTGCAAGAGCTTTG 584
||||||||||||||| |||||| |||||| |||||||||||||||||||||| |||||||
Sbjct 505 CTTCAGATTCGAAACTTGAATCGAATGTTATCTGGTCTTACTACTCTTGCAAAAGCTTTG 564
Query 585 ATTGTTTGATTACTAAGTTCTCTGATCTAGGGTTTGATCTCTCCTTAGAGAAATCCAAAT 644
|||||||||||||||| ||| | ||||||||||||||||||||||||||||| |||||||
Sbjct 565 ATTGTTTGATTACTAAATTCCCCGATCTAGGGTTTGATCTCTCCTTAGAGAATTCCAAAT 624
Query 645 CTCAGTTCTCTGCTTACAAATCCGAGCTTGATCTT-CCGATCTCGCAGCTTCTCCAGATC 703
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 625 CTCAGTTCTCTGCTTACAAATCCGAGCTTGAT-TTACCGATCTCGCAGCTTCTCCAGATC 683
Query 704 GCTAAATCTGCTAATTCTGTTCTCCGTCTTGGTATCGATGTCGGTGGTGGTACTGGATCT 763
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 684 GCTAAATCAGCTAATTCTGTTCTCCGTCTTGGGATCGATGTCGGTGGTGGTACTGGATCT 743
Query 764 TTCGCTGCTGCGATGAAGGCTCGTAATGTTACGGTTTTGACCACGACGATGAATTTTAAT 823
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 744 TTCGCTGCTGCGATGAAGGCTCGTAATGTTACGGTTTTGACCACGACGATGAATTTCAAT 803
Query 824 GCGCCGTATAGTGAAGCGGTGGCGATGAGAGGACTTGTGCCGCTTCATGTGCCG-TTACA 882
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||
Sbjct 804 GCGCCGTATAGTGAAGCGGTGGCGATGAGAGGGCTTGTGCCGCTTCATGTGCCGCTT-CA 862
Query 883 GCAACGGCTTCCGGTGTTTGATGGTGTTGTGGATTTGGTTAGGTGTGGAAGAGCGGTGAA 942
||| ||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||
Sbjct 863 GCAGCGGCTTCCGGTGTTTGATGGTGTGGTGGATTTGGTTCGGTGTGGAAGAGCTGTGAA 922
Query 943 TCGGTGGATTCCGGTGACGGTTATGGAATTTTTCTTCTTTGATTTGGATAGGATTCTTCG 1002
|||||||||||||||||| |||||||| ||||||||||| ||||||||| | ||||||||
Sbjct 923 TCGGTGGATTCCGGTGACTGTTATGGAGTTTTTCTTCTTCGATTTGGATCGAATTCTTCG 982
Query 1003 TGGTGGTGGTTATCTTTGGTTGGATCGGTTCTTTAGTAAAAAAGTTGATCTTGAAAATGT 1062
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 983 TGGCGGTGGTTATCTTTGGTTGGATCGGTTCTTTAGTAAAAAAGTTGATCTTGACAATGT 1042
Query 1063 TTATGCACCGATGATCGGGAAATTGGGGTATAAGAAGGTGAAATGGGCGGTGGCTAACAA 1122
|||||| || |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1043 TTATGCGCCTATGATCGGAAAATTGGGTTATAAGAAGGTGAAATGGGCGGTGGCTAACAA 1102
Query 1123 AGCT-GATTCGAAACATGGTGAAGTTTTCTTGACGGCTTTGCTTCAAAAACCTGTTGCAA 1181
| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1103 AA-TAGATTCGAAACATGGTGAAGTTTTCTTGACGGCTCTGCTTCAAAAACCTGTTGCAA 1161
Query 1182 GATGATAAAATCTTTCT-GAGGGCTATTTCCTCGACTTTGTTAGCAAACAGCTTACTTTT 1240
||| || || ||||| | ||||||||||||||||| ||||| ||||||||||||||| ||
Sbjct 1162 GATAATGAA-TCTTTTTTGAGGGCTATTTCCTCGAGTTTGT-AGCAAACAGCTTACTGTT 1219
Query 1241 GTTGAAGATTTGGAAAGCAAGATTTTTCAACGATTTCAGATATTGCTTTTTTCCAGATGT 1300
||||||||||||||| |||||||| ||| ||| ||||||| || ||||||| |||| |||
Sbjct 1220 GTTGAAGATTTGGAAGGCAAGATTCTTCGACGGTTTCAGACATAGCTTTTT-CCAGCTGT 1278
Query 1301 AAGCACACAAGCAATGATGTTATTTATGCGAAAGAAGAACTAGGGGAATTGTAAGCCAAG 1360
||||||||||||||| ||||||||| ||||||| |||| ||||||||||||||||||||
Sbjct 1279 AAGCACACAAGCAATCATGTTATTTCTGCGAAACAAGATTTAGGGGAATTGTAAGCCAAG 1338
Query 1361 GTTTGATCTATTGTTGGTAGAGGGAGAT-TGGTTAAAC-GGTGGTATACATAAATTATGG 1418
|||||||| |||||| ||||| ||| | || ||||| ||||||| ||||||||||| |
Sbjct 1339 ATTTGATCTGTTGTTGTTAGAGAGAG-TCTGATTAAAATGGTGGTACACATAAATTATAG 1397
Query 1419 AGTCTTCTACTTTGATTCTGTCATAGATAATATGCATTTATATTATTCCTAAGATGGTAA 1478
| ||||| |||| | ||||||||||| ||||||||||||||||||||| |||||||| ||
Sbjct 1398 ACTCTTCGACTT-GTTTCTGTCATAGCTAATATGCATTTATATTATTCATAAGATGG-AA 1455
Query 1479 GTTTT-GTGGAAGGCTGATTGTAGAATGGTTAAGAAGTTTCATGA-TA-AAGTTCAAGCT 1535
|||| ||||||||| |||||||||||||||||||||||||| || | ||||| |||||
Sbjct 1456 TTTTTTGTGGAAGGCAGATTGTAGAATGGTTAAGAAGTTTCA-GAATTTAAGTTGAAGCT 1514
Query 1536 TCTGAAAGTTATTCGTTTTATGACGTTT 1563
||||||||||||| || |||||||||||
Sbjct 1515 TCTGAAAGTTATTTGTCTTATGACGTTT 1542
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59915955385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5