BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29800.1
Length=1932
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473186 jgi|Araly1|473186|fgenesh2_kg.1__3140__AT1G29800.1 2798 0.0
> Ahg473186 jgi|Araly1|473186|fgenesh2_kg.1__3140__AT1G29800.1
Length=1798
Score = 2798 bits (1515), Expect = 0.0
Identities = 1681/1761 (95%), Gaps = 11/1761 (1%)
Strand=Plus/Plus
Query 1 AAGGTTAGCGACGGTGTTAACTTGTAAAGTTGTTGTAATCGTTTTCCAGACGACATAGTC 60
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 1 AAGGTTAGCGACGGTGTTAACTTGTAAA---GTTGTAATCGTTTTCCTGACGACATAGTC 57
Query 61 --GTGTTTCGGAGTTTCTGAAA-TTTGTAAAAATCGAAAGATTGGCTTCGCAATCGAGAC 117
||||||| | |||||||||| ||||||| ||||| |||||||||||||| |||||||
Sbjct 58 GTGTGTTTCTGTGTTTCTGAAATTTTGTAAGAATCG-AAGATTGGCTTCGCTATCGAGAG 116
Query 118 AAGGAACAACTCTAGAACATGGATGAAAGAGATCGAGAAATTCGTGC-TTCTCATGGTGA 176
|||||| |||||||||| |||||||||||||||| |||||||||| | ||||||||||||
Sbjct 117 AAGGAAGAACTCTAGAAAATGGATGAAAGAGATCCAGAAATTCGT-CGTTCTCATGGTGA 175
Query 177 TTCTAATGCTGGTAATGTCGTTAGTCAAAGCATAGAGAATACTAGAGAAGAAGATTCTGG 236
|||| ||||||||||||||||| ||||||||||| || |||||||||||||| |||||||
Sbjct 176 TTCTGATGCTGGTAATGTCGTTGGTCAAAGCATAAAGGATACTAGAGAAGAAAATTCTGG 235
Query 237 -TTCATGTGAAGGCTTTGTTGAAGAGAGCAAAAGACTGGAACCGGAACAACAAAAGCATG 295
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 236 CTT-ATGTGAAGACTTTGTTGAAGAGAGCAAAAGACTGGAACCGGAACAACAAAAGCGTG 294
Query 296 GTAAATATTTTTTCTATGACACACCGCTTTCTGAGGAAACCGGGGTTTGGATACCTGTTT 355
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 295 GTAAATATTTTTTCTATGACACGCCGCTTTCTGAGGAAACCGGGGTTTGGATTCCTGTTT 354
Query 356 CAGTCCCACCCATGTTAGAACCTGATCATGAGGAATGGTCAAGAGGTCTTAGTTTCAATG 415
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 355 CAGTCCCACCCATGTTAGAACCTGATCACGAGGAGTGGTCAAGAGGTCTTAGTTTCAATG 414
Query 416 GTGGTTACTTCCCTGAAGGAGATATGGGATGGGACCAGATATTTGATGAAGATAAGGAGT 475
|||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 415 GTGGTTACTTCCCTGAGGGAGATATGGGATGGAACCAGATATTTGATGAAGACAAGGAGT 474
Query 476 TAACTATGTGGGATGTGATAGTTGATATGTTACTTGCAGCGCGTGGTAAAGCGAGTGCTC 535
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 475 TAACCATGTGGGATGTGATAGTGGATATGTTACTTGCAGCGCGTGGTAAAGCGAGTGCTC 534
Query 536 TTAGTTCTGGCAACCTTGAGAGATGTGGCATTAATTTTTTGTCGGGACATCTTCTTGAAC 595
||||||| || || ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 535 TTAGTTCGGGAAATCTTGAGAGATGTGGCATTAATTTTTTGTCAGGACATCTTCTTGAAC 594
Query 596 AAGCTTGGCAAGATATGGCTCATACTCTTACTGAGGCTAACTTTGGTAATGCAAGAGAGA 655
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 595 AAGCTTGGCAAGAGATGGCTCATACTCTCACTGAGGCTAACTTTGGTAATGCAAGAGAAA 654
Query 656 TTCTGGAGACTGAGCCACCCAAGTGGCTACCGGATAGCGCTGCTTCTGCTTGTATGCTAT 715
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 655 TTCTGGAGACTGAGCCACCCAAGTGGCTGCCGGATAGTGCTGCTTCTGCTTGTATGCTAT 714
Query 716 GTAGTGTGAGGTTTCATCCAATTATGTGTTCCCGTCATCACTGTCGATATTGTGGAGGAA 775
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 715 GTAGTGTGAGGTTTCATCCAATTATGTGTTCCCGTCATCATTGTCGATATTGTGGAGGAA 774
Query 776 TATTCTGTAGGGATTGTTCTAAAGGAAAAAGCTTGGTTCCTGTAAAGTTTCGTGTTTCAG 835
||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 775 TATTCTGTAGGGACTGTTCTAAAGGAAGAAGCTTGGTTCCTGCAAAGTTTCGTGTTTCAG 834
Query 836 ATCCCCAGAGGGTTTGTGATGTGTGTTTTGTGAGGTTGGAGTCTGTGCAGCCTTATTTGA 895
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 ATCCCCAAAGAGTTTGTGATGTGTGTTTTGTGAGGTTGGAGTCTGTGCAGCCTTATTTGA 894
Query 896 TGGACCAAGTGAGTCCTGCTGCTCAGTTGCCAACCCATGACTTGACAGATCTTAGTACGT 955
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 895 TGGACCAAGTGAGTCCTGCTGCTCAGTTGCCAACCCATGACTTGACAGATCTTAGTACAT 954
Query 956 TGAGGTCTTGGGTGAATTTTCCATGGGGACAATCCATGGAGTATGAGATCTATAAGGCGA 1015
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 955 TGAGGTCTTGGGTGAATTTTCCATGGGGACAATCCATGGAGTATGAGATTTATAAGGCAA 1014
Query 1016 CAAACACTCTTCGGGGTTATATAACCAAGGTTGGTTCTTCGAGAACTGAGAGGTCCATCC 1075
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 CAAACACTATTCGGGGTTATATAACCAAGGTTGGTTCTTCGAGAACTGAGAGGTCCATCC 1074
Query 1076 CAGATGCCATTTTAAGACAAGCAAAAGGTCTTGCAGTAATCACTGTTGCCAGAGTTGGAG 1135
||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 1075 CAGATGCTATTTTAAGACAAGCAAAAGGGCTTGCAGTAATCACTGTTACCAGAGTTGGAG 1134
Query 1136 TTATGGTTACATATAAAATCGGGACTGGACTTGTGGTTGCTCGTAGAGATGATGGCTCCT 1195
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1135 TTATGGTTACATATAAAATCGGGACTGGACTCGTGGTTGCTCGTAGAGATGATGGCTCCT 1194
Query 1196 GGTCTCCACCCTCTGCCATCTCTTCATTTGGTTTGGGATGGGGTGCTCAGGCAGGAGGAG 1255
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 GGTCTCCACCCTCCGCCATCTCTTCATTTGGTTTGGGATGGGGTGCTCAGGCAGGAGGAG 1254
Query 1256 AGTTCATAGACTTTATTATCGTTCTGAGAACTCGTGAAGCCATCCAAACGTTTGGGAGTA 1315
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1255 AGTTCATAGACTTTATTATCGTTCTGAGAACTCGTGAAGCCATCCAAACATTTGGGAGTA 1314
Query 1316 ACACCCATCTTGTTGTTGGAGCTGGTTTAAGCGCTGCAGTTGGTGTGACTGGACGAGCAG 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 ACACCCATCTTGTTGTTGGAGCTGGTTTAAGCGCTGCAGTTGGTGTGACTGGACGAGCAG 1374
Query 1376 TTGAAGCGGATATCCGAGCAGGTAGTGGTGGATATGCTGCTTGCTACACCTACAGCTGCA 1435
||||||| |||||| |||||||||| ||||||||||||||||| || |||||||||||||
Sbjct 1375 TTGAAGCAGATATCTGAGCAGGTAGCGGTGGATATGCTGCTTGTTATACCTACAGCTGCA 1434
Query 1436 GCAAAGGTGCATTTGTCGGATGCTCGCTTGAAGGAAGCATTTTCACAACACGTACAAGTG 1495
|||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 1435 GCAAAGGTGCATTTGTCGGATGCTCGCTTGAAGGAAGCATCTTCACGACACGCACAAGTG 1494
Query 1496 AGAACTCACGGTTCTATGGGAGCCAGTCCCTAGCTGCGTCTGACATCCTCCTTGGCTCTT 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 AGAACTCACGGTTCTATGGGAGCCAGTCCCTAGCTGCGTCTGACATCCTCCTTGGCTCTT 1554
Query 1556 TGCCAAGGCCACCTGCCGCTGCTGCACTCTACCGTGCGCTTGGCGATCTGTATCAGAAGA 1615
||||||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1555 TGCCAAGACCACCTGCTGCTGCTGCCCTCTACCGTGCACTTGGCGATCTGTATCAGAAGA 1614
Query 1616 TGGGGAGTGAAACTGTTCGGTCTCCGGCAATTTCTCCATTGTCTGAAGACTAAACTTGTT 1675
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1615 TGGGGAGTGAAACTGTGGGGTCTCCAGCAATTTCTCCATTGTCTGAAGACTAAACTTGTT 1674
Query 1676 CGATTCGCTTCATCTCGTTGGAAGAATGATTGACAACTATCTTGTATAGATTCATGCAAT 1735
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1675 TAATTCGCTTCATCTCTTTGGAAGAATGATTGACAACAATCTTGTATAGATTCATGCAAT 1734
Query 1736 TCTTGAATGTACATAGTTTGT 1756
|||||||||||||||||||||
Sbjct 1735 TCTTGAATGTACATAGTTTGT 1755
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72600006970
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5