BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29810.1
Length=896
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912787 jgi|Araly1|912787|Al_scaffold_0001_3041 909 0.0
> Ahg912787 jgi|Araly1|912787|Al_scaffold_0001_3041
Length=564
Score = 909 bits (492), Expect = 0.0
Identities = 541/565 (96%), Gaps = 2/565 (0%)
Strand=Plus/Plus
Query 101 ATGAGTCGGCTCTTGCTACCTAAACTTTTCTCAATCTCTAGAACACAGGTTCCAGCTGCA 160
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGAGTCGGCTCTTGCTACCTAAACTTTTCTCAATCTCCAGAACACAGGTTCCAGCTGCA 60
Query 161 TCATTGTTCAATAATCTGTACAGACGTCACAAACGTTTTGTTCATTGGACGAGTAAGATG 220
|||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCATTGCTCAACAATCTGTACGGACGTCACAAACGTTTTGTTCATTGGACGAGTAAGATG 120
Query 221 TCAAC-AGATAGTGTTAGATCATCCACAACTGGTGGTTCTGCTTCTGGAGCTAGAACATT 279
|| || ||||||||| | ||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 TC-ACAAGATAGTGTAATTTCATCCACAGCTGGTGGTTCTGCTTCTGGAGCTAGAACATT 179
Query 280 TTGCTCCCTCGCAGATTTATCAACCAAAAAGTGTGTGCCATGCAATGCGAAGGATCTGCG 339
||||||||| | |||||||| | ||||||||||||||||||| ||| | |||||||||||
Sbjct 180 TTGCTCCCTAGAAGATTTATTAGCCAAAAAGTGTGTGCCATGTAATTCCAAGGATCTGCG 239
Query 340 CGCCATGACCGAACAAAGTGCCCAAGACCTACTTCAAAAGGTTGCTGGATGGGATTTGGC 399
| ||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 240 CCCCATGACCGAACAAAATGCACAAGACCTACTTCAAAAGGTTACTGGATGGGATTTGGC 299
Query 400 CAATGACAATGATACATTAAAGCTGCATCGGTCATGGAGGGTGAAAAGTTTTACAAAGGG 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CAATGACAATGATACATTAAAGCTGCATCGGTCATGGAGGGTGAAAAGTTTTACAAAGGG 359
Query 460 GCTAGATTTCTTCCAACGTGTAGCTGATATCGCTGAATCAGAAGGTCATCACCCAGATTT 519
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GCTAGATTTCTTCAAACGTGTAGCTGATATCGCTGAATCAGAAGGTCATCACCCAGATTT 419
Query 520 GCATCTGGTCGGCTGGAATAATGTGAAAATTGAGATATGGACACATGCGATAGGTGGTTT 579
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 420 GCATCTGGTCGGCTGGAATAATGTGAAAATCGAGATATGGACACATGCGATAGGTGGTTT 479
Query 580 GACAGAAAACGACTTCATTCTTGCTGCTAAGATCAACGAGCTCCAAGTGGAAGATCTTCT 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GACAGAAAACGACTTCATTCTTGCTGCTAAGATCAACGAGCTCCAAGTGGAAGATCTTCT 539
Query 640 GAGGAAGAAGAAAGTTGCTAAGTGA 664
|||||||||||||||||| ||||||
Sbjct 540 GAGGAAGAAGAAAGTTGCCAAGTGA 564
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33205060707
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5