BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29820.1
Length=1877
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473189 jgi|Araly1|473189|fgenesh2_kg.1__3143__AT1G29820.2 2700 0.0
> Ahg473189 jgi|Araly1|473189|fgenesh2_kg.1__3143__AT1G29820.2
Length=1772
Score = 2700 bits (1462), Expect = 0.0
Identities = 1621/1699 (95%), Gaps = 5/1699 (0%)
Strand=Plus/Plus
Query 42 GAGTTTAAATTATCTGTCTTGAGAAGCTGGTAGATTTTTCTATTGATGAACAATGGGTGA 101
||||| || ||||||||||||||||||||||||| |||||||||||| ||| ||||||||
Sbjct 77 GAGTTGAAGTTATCTGTCTTGAGAAGCTGGTAGA-TTTTCTATTGATTAACCATGGGTGA 135
Query 102 GAACGGGGAGAATCATTCAGTCTCTCAAGAGAGTAAATCCAAGAAGCTTGAGAGTAAAAA 161
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 136 AAACGGGGAGAATCATTCAGTCTCTCAAGAGAGTAAATCCAAGAAGCTTGATAGTAAAAA 195
Query 162 TCATTCAGGTGTTCCCAAGAGCGATCTTTGGACTGATGGGATTATTTGTGCCTTTGAGTT 221
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 196 TCATTCAGGTGTTCCCAAGAGTGATCTTTGGACTGATGGGATTATTTGTGCCTTTGAGTT 255
Query 222 TATTCGAGGTCCGAAAAAACATGTTGATTCAAAACAACTTGAGAAAGG-TGCTTTGAAGC 280
||||||||||||||||||||||||||||||||||||||| || ||||| | | |||||||
Sbjct 256 TATTCGAGGTCCGAAAAAACATGTTGATTCAAAACAACTGGATAAAGGTTAC-TTGAAGC 314
Query 281 AAGAAGATGGACCAATCAGTCATAGTTTCCCTGGTCATAACCCGTTTGTTGATTCGTCTC 340
||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||
Sbjct 315 AAGAAGATGGACCAATCAGACATACTTTCCCTGGTCATAACCCGTTTGTTGATTCGCCTG 374
Query 341 CAGTTGATGATTTAAGGTCAAGGTCGGTATCTTCTTTGGATTTTAAAGAGGCTCATTTGC 400
| || |||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 375 CGGTCGATGATTTAAGGTCAAGGTCTGTATCTTCTTTGGATTTTAAAGAGGCTCATGTGC 434
Query 401 TTCCATCAGGGCATGTTGAGAGATATGAGGGAAGTCATTGGGTACCTATTGGTTGGGCTA 460
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 435 TTCCATCAGGACATGTTGAAAGATATGAGGGAAGTCATTGGGTACCTATTGGTTGGACTA 494
Query 461 GAATAACTGAACTAGTTCAAATGGTTCAAGTAAACGCTGAGTGGCCTAATCTAGAGTTGA 520
||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| |
Sbjct 495 GAATAACTGAACTAGTTCAAATGGTGCAAGTAAACGCGGAATGGCCTAATCTAGAGTT-A 553
Query 521 TT-GATGATGAAGAAGATGTCCCTGTTACAGATTTAGCAGCTCCGTATTGGGAACGACCA 579
|| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 554 TTGGATGATGAAGACGATGTCCCTGTTACAGATTTAGCGGCTCCGTATTGGGAACGACCA 613
Query 580 GGTGGCCCTACATGGTGGTGTCACTTGTCTGCTGGAAACTCTTTTGTTGAGGGATGGCTT 639
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 614 GGTGGCCCCACATGGTGGTGTCACTTGACTGCTGGAAACTCTTTTGTTGAGGGATGGCTC 673
Query 640 AGAAGTGCTACGTGGTTGCATCCTGCAATTAGTCTGGCATTGAGGGATGAAAGTAAGCTA 699
||||||||||| ||||||||||| |||||||| || |||||||||||||| |||||||||
Sbjct 674 AGAAGTGCTACATGGTTGCATCCCGCAATTAGCCTTGCATTGAGGGATGAGAGTAAGCTA 733
Query 700 ATAAGTGAACGGATGAGACATCTTCTATATGAGGTTCCAGTGAGAGTAGCTGGTGGTTTA 759
||||||||||||||||||||||||||||||||||||||||| || || ||||| ||||||
Sbjct 734 ATAAGTGAACGGATGAGACATCTTCTATATGAGGTTCCAGTAAGGGTGGCTGGGGGTTTA 793
Query 760 TTGTTTGAACTTTTAGGACAATCAGTTGGTGATCCAGTAATCAGTGAGGATGATGTACCC 819
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 794 TTGTTTGAACTTTTAGGACAATCAGTCGGTGATCCAGTAATCAGTGAGGATGATGTACCC 853
Query 820 GTTGTTTTCCGCTCTTGGCAAGCGAAGAACTTCTTAGTTTCCGTGATGCACATAAAAGGA 879
|||||||| |||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct 854 GTTGTTTTTCGCTCTTGGCAAGCGAAGAACTTCTTGGTATCTGTGATGCACATAAAAGGA 913
Query 880 AATGTAACGAACACCAATGTCCTTGGTATAACTGAAGTAGAGGAGCTGCTTTATGCAGGA 939
|||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 914 AATGTAACGAGTACCAATGTCCTCGGTATCACTGAAGTAGAGGAGCTGCTTTATGCAGGA 973
Query 940 GGTTATAATGTACCAAGAACGGTTCATGAGGTTATAGCACACTTGGCTTGCCGTCTTTCT 999
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 974 GGTTATAATGTACCAAGAACGGTTCATGAAGTTATAGCACACTTGGCTTGCCGTCTTTCT 1033
Query 1000 CGATGGGATGATAGATTATTCCGTAAATCCATATTTGGTGCAGCCGATGAAATCGAATTG 1059
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1034 CGATGGGATGATAGGTTATTCCGTAAATCCATATTTGGTGCAGCCGATGAAATCGAATTG 1093
Query 1060 AAGTTTATGAACAGGAGAAACTATGAGGATTTGAATCTTTTCAGTATCATTCTCAACCAA 1119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1094 AAGTTTATGAACAGGAGAAACTATGAGGATTTGAATCTTTTCAGTATCATTCTCAACCAA 1153
Query 1120 GAGATCAGAAAATTATCAAGACAGGTCATCCGAGTGAAGTGGTCACTACACGCGAGAGAG 1179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1154 GAGATCAGAAAATTATCAAGACAGGTCATCCGAGTGAAGTGGTCACTACACGCGAGAGAG 1213
Query 1180 GAGATTATCTTTGAGCTTCTCCAGCATTTGAGGGGAAACATAGCTCGACATCTCTTAGAT 1239
||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1214 GAGATTATCTTCGAGCTTCTCCAGCATTTGAGGGGAAACATAGCTCGGCATCTGTTAGAA 1273
Query 1240 GGTTTGAGGAAGAACACAAGGGAAATGTTGGAAGAACAAGAAGCAGTTCGTGGACGTCTC 1299
|||||| | ||||||||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct 1274 GGTTTGCGAAAGAACACAAGGGAAATGTTGGAGGAACAAGAAGCAGTTCGCGGGCGTCTC 1333
Query 1300 TTCACAATTCAAGATGTCATGCAAAGCAGTGTCCGCGCTTGGTTACAGGACAAAAGCTTG 1359
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1334 TTCACAATTCAAGATGTCATGCAAAGCAGTGTCCGTGCTTGGTTACAGGACAAAAGCTTG 1393
Query 1360 AGAGTAAGCCACAACTTGGCCGTCTTCGGAGGATGTGGTCTTGTACTTACCATCATCGTA 1419
||||||||||||||||||||||| || ||||||||||||||||| |||||||| ||||||
Sbjct 1394 AGAGTAAGCCACAACTTGGCCGTGTTTGGAGGATGTGGTCTTGTGCTTACCATAATCGTA 1453
Query 1420 GGGCTGTTTGGGATCAATGTGGATGGGATCCCGGGGGCGCAGAACACGCCTTATGCGTTT 1479
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1454 GGACTGTTTGGGATCAATGTGGATGGTATCCCGGGGGCGCAGAACACGCCTTATGCGTTT 1513
Query 1480 GGTCTATTCACTTTTCTGATGGTTCTCCTTGGGGCTATTCTGATTGTGGTTGGTTTGGTA 1539
|||||||||||| | || ||||||||||||| |||||||||||||||||||||||||||
Sbjct 1514 GGTCTATTCACTGTACTTTTGGTTCTCCTTGGAGCTATTCTGATTGTGGTTGGTTTGGTA 1573
Query 1540 TACTTGGGGCTCAAAAAACCCATTACAGAAGAACAAGTAGAAGTTAGAAAGCTGGAGCTA 1599
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1574 TACTTGGGGCTCAAAAAACCCATTACAGAAGAACAAGTTGAAGTTAGAAAGCTGGAGCTA 1633
Query 1600 CAAGACGTGGTTAAGATATTTCAACACGAAGCGGAGACTCATGCCCAACTCCGTAGAAAC 1659
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1634 CAAGACGTGGTTAAGATATTTCAACACGAAGCAGAGACTCATGCCCAACTCCGTAGAAAC 1693
Query 1660 AACCTTTCTCCTACTGCTGGAGATGTCTTTGATGCTGATTATATTCTCATCCAGTAAACA 1719
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1694 AACCTTTCTCCTACTGCTGGAGATGTGTTTGATGCTGATTATATTCTCATCCAGTAAACA 1753
Query 1720 AACTTGGAATCTATTTTCT 1738
|||||||||||||||||||
Sbjct 1754 AACTTGGAATCTATTTTCT 1772
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70505043495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5