BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29840.1
Length=1033
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922025 jgi|Araly1|922025|scaffold_103306.1 1290 0.0
Ahg347854 jgi|Araly1|347854|fgenesh1_pg.C_scaffold_5001246 1018 0.0
Ahg897601 jgi|Araly1|897601|Al_scaffold_0005_1567 604 3e-172
Ahg906425 jgi|Araly1|906425|Al_scaffold_0003_3553 470 1e-131
> Ahg922025 jgi|Araly1|922025|scaffold_103306.1
Length=833
Score = 1290 bits (698), Expect = 0.0
Identities = 785/827 (95%), Gaps = 6/827 (1%)
Strand=Plus/Plus
Query 112 ACAAATCAAACAAGCTGAGAATGGATTCGTCTCAGGGAATTTCAGCTACTACACAACAGA 171
||||| | |||||||||||||||||||| ||||| |||||||||||| ||||||||| |
Sbjct 1 ACAAAGCTAACAAGCTGAGAATGGATTCATCTCAAGGAATTTCAGCTGGTACACAACAAA 60
Query 172 AGATAGTGATT-CTGAATAGCAACAACGAGAAGCTAGTGGGTCTGCTTCATGAAACTGGT 230
||||||||||| || || |||||||| |||||||| ||||||||||||||||||||||||
Sbjct 61 AGATAGTGATTCCT-AACAGCAACAATGAGAAGCTTGTGGGTCTGCTTCATGAAACTGGT 119
Query 231 TCAACAGAAATTGTGGTCTTGTGCCATGGCTTTCGATCAACCAAGAATGACCAAGTCATG 290
|| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 120 TCCACAGAAATTGTTGTCTTGTGCCATGGCTTTCGATCAACCAAGAATGACCTGGTCATG 179
Query 291 AAAAATGTTGCTGCTGCTATAGAGAAAGAAGGGATCAGCGCTTTCCGTTTTGATTTCTCT 350
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 180 AAAAATGTTGCTGCTGCTATAGAGAAAGAAGGGATCAGTGCTTTCCGTTTTGATTTCTCT 239
Query 351 GGGAACGGAGAGAGTAAAGGCAGTTTCTATTTTGGTAACTACAACTATGAAGCTGATGAT 410
||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 240 GGGAATGGAGAGAGTGAAGGCAATTTCTATTTTGGTAACTACAACTATGAAGCTGATGAT 299
Query 411 CTACATTCTGTTATCCGATACTTCACTAACATGAACCGTGTGGTTCCTATAATTATTGGC 470
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 300 CTACATTCTGTTATCCGATACTTTACTAACATGAACCGTGTGGTTCCTATAATTATCGGC 359
Query 471 CACAGTAAAGGTGGTGATGTGGTCCTCGTCTATGCCTCGAAGTATCAAGATATTCGCAAT 530
||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct 360 CACAGTAAAGGAGGTGATGTGGTCCTCGTCTATGCCTCGAAATATCACGATATCCGCAAT 419
Query 531 GTAATCAATCTCTCGGGACGTTATGATCTGAA-GAGAGGCATAGGAGAGCGTCTTGGGGA 589
|||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||
Sbjct 420 GTAATCAATCTCTCGGGACGTTATGATCTGAAGGA-AGGCATAGGACAGCGTCTTGGGGA 478
Query 590 AGATTATTTGGAAAGAATAAAGCAACAAGGATTCATCGATATTAAAGAAGGAAACGCTGG 649
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 479 AGATTTTTTGGAACGAATAAAGCAACAAGGATTCATCGATATTAAAGAAGGAAACTCTGG 538
Query 650 GTTTCGTGTTACCGAGGAGAGCTTAATGGAAAGGTTAAACACTGATATGCATGAAGCTTG 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GTTTCGTGTTACCGAGGAGAGCTTAATGGAAAGGTTAAACACTGATATGCATGAAGCTTG 598
Query 710 CCTCAAGATTGACAAAGAATGCAGGGTCTTGACGGTTCATGGCTCGGCTGACGAGGTAAT 769
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 599 CCTCAAAATTGACAAAGAATGCAGGGTCTTGACGGTTCATGGATCGGCTGACGAGGTAAT 658
Query 770 ACCCCTGGAAGATGCCAAGGAGTTTGCAAAGATCATACCGAACCACAAGCTGGAGATTGT 829
|||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 659 ACCCCTGGGAGATGCCAAGGAGTTTGCAAAGATCATACCGAACCATAAACTGGAGATTGT 718
Query 830 GGAAGGAGCTGATCATTGTTATACCAAACATCAAAGTCAATTAATTACAA-ATGTTATGG 888
||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||
Sbjct 719 GGAAGGAGCTGATCATTGTTATACCAAACATCAAAGTCAATTAGTTACAACA-GTTATGG 777
Query 889 AGTTCATAAAGACAGTCATTGTGAAGAACAACTAGttttttttGTTT 935
|||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 778 AGTTCATAAAGACAGTCATTGTGAAGAATAACTAGTTTTTTTTTTTT 824
> Ahg347854 jgi|Araly1|347854|fgenesh1_pg.C_scaffold_5001246
Length=933
Score = 1018 bits (551), Expect = 0.0
Identities = 789/903 (87%), Gaps = 20/903 (2%)
Strand=Plus/Plus
Query 26 TTCTCTAGATTACAAAATTTCCCCTTCACCTACATTC-TCGTTCTTCAACGTTAGCTTTC 84
|||||| ||||||||| |||||||| || | | || || |||||||||||| || |||
Sbjct 42 TTCTCTTTATTACAAAACTTCCCCTTTTCCCA-AATCATCCTTCTTCAACGTTCGCCTTC 100
Query 85 CCATTAAGAAGAA--GA-GAATCTCCTGCAACAAATCAAACAAGCTGAGAATGGATTCGT 141
|||| ||||| || | |||||| ||||||||| ||||||| |||||||||||||||
Sbjct 101 CCATCAAGAACAATCAACAAATCTCTTGCAACAAAGCAAACAATTTGAGAATGGATTCGT 160
Query 142 CTCAGGGAATTTCAGCTACTACACAACAGAAGATAGTGATTCTGAATAGCA-ACAACGAG 200
|| |||||| | | | | | |||||| ||| ||||||| ||| | | ||||| ||
Sbjct 161 CTAAGGGAA--T----T-C-A-AGAACAGAGGATTGTGATTCCGAA-CGGACACAACCAG 210
Query 201 AAGCTAGTGGGTCTGCTTCATGAAACTGGTTCAACAGAAATTGTGGTCTTGTGCCATGGC 260
||||| || ||||| |||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 211 AAGCTGGTTGGTCTACTTCATGAAACTGGTTCAACAGAAGTTGTAGTCTTGTGCCATGGA 270
Query 261 TTTCGATC-AACCAAGAATGACCAAGTCATGAAAAATGTTGCTGCTGCTATAGAGAAAGA 319
|||||||| || ||||||| ||||| | ||||| ||||| ||||||||||||||||||||
Sbjct 271 TTTCGATCTAA-CAAGAATAACCAAATTATGAATAATGTGGCTGCTGCTATAGAGAAAGA 329
Query 320 AGGGATCAGCGCTTTCCGTTTTGATTTCTCTGGGAACGGAGAGAGTAAAGGCAGTTTCTA 379
||| ||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 330 AGGAATCAGCGCTTTTCGTTTTGATTTCTCTGGGAATGGAGAGAGTGAAGGCAGTTTCTA 389
Query 380 TTTTGGTAACTACAACTATGAAGCTGATGATCTACATTCTGTTATCCGATACTTCACTAA 439
|| ||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 390 TTATGGTAACTATAACCATGAAGCTGATGATCTACATTCTGTTATCCAATACTTCACTAA 449
Query 440 CATGAACCGTGTGGTTCCTATAATTATTGGCCACAGTAAAGGTGGTGATGTGGTCCTCGT 499
|| |||||||||||||||||| ||| | || || ||||| || |||||||| || ||| |
Sbjct 450 CAAGAACCGTGTGGTTCCTATCATTCTCGGGCATAGTAAGGGAGGTGATGTTGTTCTCCT 509
Query 500 CTATGCCTCGAAGTATCAAGATATTCGCAATGTAATCAATCTCTCGGGACGTTATGATCT 559
||||||||| |||||||| ||| | |||||||||||||||||||||||||||||||||||
Sbjct 510 CTATGCCTCCAAGTATCACGATGTCCGCAATGTAATCAATCTCTCGGGACGTTATGATCT 569
Query 560 GAAGAGAGGCATAGGAGAGCGTCTTGGGGAAGATTATTTGGAAAGAATAAAGCAACAAGG 619
|| | ||||||| ||||||||||||| ||||||| |||||||||||| |||||||||||
Sbjct 570 TAAAAAAGGCATAAGAGAGCGTCTTGGTGAAGATTTTTTGGAAAGAATTAAGCAACAAGG 629
Query 620 ATTCATCGATATTAAAGAAGGAAACGCTGGGTTTCGTGTTACCGAGGAGAGCTTAATGGA 679
|||||| ||| || ||| ||||| | |||| ||||||||| ||| |||| ||||||||
Sbjct 630 ATTCATTGATGTTGGAGATGGAAAATCGGGGTATCGTGTTACTGAGAAGAGTTTAATGGA 689
Query 680 AAGGTTAAACACTGATATGCATGAAGCTTGCCTCAAGATTGACAAAGAATGCAGGGTCTT 739
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 690 CAGGTTAAGCACTGATATGCATGAAGCTTGCCTCAAGATTGACAAAGAATGCAGGGTCTT 749
Query 740 GACGGTTCATGGCTCGGCTGACGAGGTAATACCCCTGGAAGATGCCAAGGAGTTTGCAAA 799
|||||||||||| ||||||||||||||||||| |||||||||| ||||||||||| ||
Sbjct 750 GACGGTTCATGGATCGGCTGACGAGGTAATACGTGTGGAAGATGCGAAGGAGTTTGCGAA 809
Query 800 GATCATACCGAACCACAAGCTGGAGATTGTGGAAGGAGCTGATCATTGTTATACCAAACA 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 810 GATCATACCGAACCACAAGCTGGAGATTGTGGAAGGAGCTGATCATTGTTATACCGAGCA 869
Query 860 TCAAAGTCAATTAATTACAA-ATGTTATGGAGTTCATAAAGACAGTCATTGTGAAGAACA 918
|||||||||||| || ||| | ||||||||||||||||||||||||||| ||| |||||
Sbjct 870 CCAAAGTCAATTAGTTTCAACA-GTTATGGAGTTCATAAAGACAGTCATTATGATGAACA 928
Query 919 ACT 921
|||
Sbjct 929 ACT 931
> Ahg897601 jgi|Araly1|897601|Al_scaffold_0005_1567
Length=867
Score = 604 bits (327), Expect = 3e-172
Identities = 430/480 (90%), Gaps = 6/480 (1%)
Strand=Plus/Plus
Query 161 TACACAACAGAAGATAGTGATTCTGAATAGCAACAACGAGAAGCTAGTGGGTCTGCTTCA 220
||||||||||||||| ||||||| ||| ||| |||| |||||||| ||||| |||||||
Sbjct 21 TACACAACAGAAGATTGTGATTCCGAACAGCCACAATGAGAAGCTTGTGGGGATGCTTCA 80
Query 221 TGAAACTGGTTCAACAGAAATTGTGGTCTTGTGCCATGGCTTTCGATCAACCAAGAA-TG 279
|||||||||||| |||||||||||||||||||| |||||||||||||||| |||||| |
Sbjct 81 TGAAACTGGTTCTACAGAAATTGTGGTCTTGTGTCATGGCTTTCGATCAAACAAGAACTT 140
Query 280 ACCAAGTCATGAAAAATGTTGCTGCTGCTATAGAGAAAGAAGGGATCAGCGCTTTCCGTT 339
|| | ||||||||||| |||| ||||||||||||||||||||| |||||||||||||
Sbjct 141 TGTAA-TTATGAAAAATGTGGCTGTTGCTATAGAGAAAGAAGGGATTAGCGCTTTCCGTT 199
Query 340 TTGATTTCTCTGGGAACGGAGAGAGTAAAGGCAGTTTCTATTTTGGTAACTACAACTATG 399
| |||||||||||||| ||||||||| |||||||||||| || |||||||||||| ||||
Sbjct 200 TCGATTTCTCTGGGAATGGAGAGAGTGAAGGCAGTTTCTGTTATGGTAACTACAATTATG 259
Query 400 AAGCTGATGATCTACATTCTGTTATCCGATACTTCACTAACATGAACCGTGTGGTTCCTA 459
||||||| ||||||||||||||||||| ||||||| ||||| |||||||||||||| |||
Sbjct 260 AAGCTGACGATCTACATTCTGTTATCCAATACTTCTCTAACTTGAACCGTGTGGTTACTA 319
Query 460 TAATTATTGGCCACAGTAAAGGTGGTGATGTGGTCCTCGTCTATGCCTCGAAGTATCAAG 519
||||| |||||||||||||||| ||||||||||||||| ||||||| || |||||||| |
Sbjct 320 TAATTCTTGGCCACAGTAAAGGAGGTGATGTGGTCCTCCTCTATGCATCTAAGTATCACG 379
Query 520 ATATTCGCAATGTAATCAATCTCTCGGGACGTTATGATCTGAAGAGA-GGCATAGGAGAG 578
|||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 380 ATATCCGCAATGTAATCAATCTCTCGGGACGTTATGATCTGAAG-GAAGGCATAGGAGAA 438
Query 579 CGTCTTGGGGAAGATTATT-TGGAAAGAATAAAGCAACAAGGATTCATCGATATTAAAGA 637
|||||||| ||| ||| || |||||||||| ||| ||||||||| ||||||| |||||||
Sbjct 439 CGTCTTGGTGAAAATT-TTGTGGAAAGAATTAAGAAACAAGGATACATCGATGTTAAAGA 497
Score = 394 bits (213), Expect = 7e-109
Identities = 252/271 (93%), Gaps = 2/271 (1%)
Strand=Plus/Plus
Query 654 CGTGTTACCGAGGAGAGCTTAATGGAAAGGTTAAACACTGATATGCATGAAGCTTGCCTC 713
|||||||||||||| ||||| ||||| |||||||||| |||||||||||||||||||||
Sbjct 598 CGTGTTACCGAGGAAAGCTTGATGGACCGGTTAAACACAGATATGCATGAAGCTTGCCTC 657
Query 714 AAGATTGACAAAGAATGCAGGGTCTTGACGGTTCATGGCTCGGCTGACGAGGTAATACCC 773
||||||||||||||||||||||||||||| |||||||| |||||||||||| | |||||
Sbjct 658 AAGATTGACAAAGAATGCAGGGTCTTGACTGTTCATGGATCGGCTGACGAGACAGTACCC 717
Query 774 CTGGAAGATGCCAAGGAGTTTGCAAAGATCATACCGAACCACAAGCTGGAGATTGTGGAA 833
|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 718 GTGGAAGATGCAAAGGAGTTTGCAAAGATCATACCAAACCACAAGCTGGAGATTGTGGAA 777
Query 834 GGAGCTGATCATTGTTATACCAAACATCAAAGTCAATTAATTACAA-ATGTTATGGAGTT 892
||||||||||||||||||||||||||||||||||||||| || ||| | |||||||||||
Sbjct 778 GGAGCTGATCATTGTTATACCAAACATCAAAGTCAATTAGTTTCAACA-GTTATGGAGTT 836
Query 893 CATAAAGACAGTCATTGTGAAGAACAACTAG 923
|||||| || |||||||||||||||||||||
Sbjct 837 CATAAACACCGTCATTGTGAAGAACAACTAG 867
> Ahg906425 jgi|Araly1|906425|Al_scaffold_0003_3553
Length=837
Score = 470 bits (254), Expect = 1e-131
Identities = 619/788 (79%), Gaps = 53/788 (7%)
Strand=Plus/Plus
Query 165 CAACAGAAGATAGTGATTCTGAATAGCAACAACGAGAAGCTAGTGGGTCTGCTTCATGAA 224
|||| |||||| ||||||| ||| || |||||||||||| |||||||||||||| |||
Sbjct 8 CAAC-GAAGATCGTGATTCCGAACCGCCGCAACGAGAAGCTCGTGGGTCTGCTTCACGAA 66
Query 225 ACTGGTTCAACAGAAATTGTGGTCTTGTGCCATGGCTTTCGATC-AACCAAGAATGACCA 283
|| || |||| ||| |||||||||| |||||||||||| |||| | ||| | | ||
Sbjct 67 ACCGGATCAAAAGACGTTGTGGTCTTATGCCATGGCTTTAGATCGGA-CAA-AGCCAACA 124
Query 284 AG--TCATGAAAAATGTTGCTGCTGCTATAGAGAAAGAAGGGATCAGCGCTTTCCGTTTT 341
|| || |||| ||||| ||| | ||| |||||| |||| |||||| |||| || ||
Sbjct 125 AGATTC-TGAAGAATGTGGCTACAGCTCTAGAGATAGAAAAAATCAGCTCTTTTCGATTC 183
Query 342 GATTTCTCTGGGAACGGAGAGAGTAAAGGCAGTTTCTATTTTGGTAACTACAACTA-TGA 400
|||||||| || |||||||| ||| |||| | ||| || | |||||||| |||| | |||
Sbjct 184 GATTTCTCCGGCAACGGAGATAGTGAAGGAACTTTTTACTATGGTAACTTCAAC-AGTGA 242
Query 401 AGC---TGATGATCTAC-ATTCTGTTATCCGATAC-T-T-CACTAACATGAACCGTGTGG 453
||| |||||||| | | | ||||| | | || | | | | |||||||||||||| |
Sbjct 243 AGCAGAGGATGATCTGCAAAAC-GTTATTCAACACTTGTCCTCAAACATGAACCGTGTAG 301
Query 454 TTCCTATAATTATTGGCCACAGTAAAGGTGGTGATG-TGGTCCTCGTCTATGCCTCGAAG 512
||||| | ||| | || || |||||||| ||||||| || | || ||||||| || |||
Sbjct 302 TTCCTGTGATTCTAGGTCATAGTAAAGGAGGTGATGTTGTTGTTC-TCTATGCTTCAAAG 360
Query 513 TAT--C-A-AGATATTCGCAATGTAATCAATCTCTCGGGACGTTATGATCTGAAGAGAGG 568
||| | | | |||| ||||||||| ||||| | |||||||||| |||||| || |||
Sbjct 361 TATGGCGATA-ATATCCGCAATGTAGTCAATATTTCGGGACGTTTTGATCT-AA-AGA-- 415
Query 569 CATAGGAG-AGCGTCTTGGGGAAGATTATTTGG-AAAGAATAAAGCAACAAGGATTCATC 626
| ||| | | |||||||| || | |||| ||| |||| || ||| ||||||| |||||
Sbjct 416 -A-AGGTGTA-CGTCTTGGAGATGGTTATATGGAAAAG-ATCAAGGAACAAGGGTTCATT 471
Query 627 GATATTAAAGA-AGGAAACGCTGGGTTT-CGTGTTAC-CGAGGAGAG-C-TTAATGGAAA 681
||| || ||| ||||| || |||| |||||||| | | |||| | |||||||| |
Sbjct 472 GATGCTACAGAGGGGAAA-TCT-TGTTTCCGTGTTACTC-A--AGAGTCTTTAATGGATA 526
Query 682 GGTTAAACACTGATATGCATGAAGCTTGCCTCAAGATTGACAAAGAATGCAGGGTCTTGA 741
|||||||||||||||||||||||||||| ||||||||||| |||||||||| || ||||
Sbjct 527 GGTTAAACACTGATATGCATGAAGCTTGTCTCAAGATTGATAAAGAATGCAAAGTTTTGA 586
Query 742 CGGTTCATGGCTCGGCTGACGA-GGTAATACCCCTGGAAGATGCCAAGGAGTTTGCAAAG 800
|||||||||| |||| |||| | ||| |||| |||||||||| |||||||||||||||
Sbjct 587 CGGTTCATGGTTCGGATGAC-ACGGTTGTACCTGTGGAAGATGCTAAGGAGTTTGCAAAG 645
Query 801 ATCATACCGAACCACAAGCTGGAGATTGTGGAAGGAGCTGATCATTGTTATACCAAACAT 860
| |||||||| || |||||||||||||||||||||||| ||||| |||| || |||||
Sbjct 646 GTTATACCGAATCATAAGCTGGAGATTGTGGAAGGAGCTAATCATGGTTACACTAAACAC 705
Query 861 CA-AAGTCAATTAATTACAA-ATGTTATGGAGTTCATAAAGACAGTC-ATTGT-GAAGAA 916
|| ||| |||| || | | | ||| ||||||| |||||||| | | ||||| ||||||
Sbjct 706 CAGAAGG-AATTGGTTTCGATA-GTTGTGGAGTTTATAAAGACTG-CGATTGTCGAAGAA 762
Query 917 CAACTAGt 924
|| |||||
Sbjct 763 CAGCTAGT 770
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38427900336
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5