BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29850.3
Length=823
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473195 jgi|Araly1|473195|fgenesh2_kg.1__3149__AT1G29850.1 1062 0.0
> Ahg473195 jgi|Araly1|473195|fgenesh2_kg.1__3149__AT1G29850.1
Length=699
Score = 1062 bits (575), Expect = 0.0
Identities = 667/709 (94%), Gaps = 16/709 (2%)
Strand=Plus/Plus
Query 5 TTTTGAAGCATTTCCCCTTTTAGAGAAGAGAGCTGTGTT-GGTTTTTGAGGTAAAAGAAG 63
|||||||||||||| |||||| |||| ||||||| ||||||||||||| ||||
Sbjct 3 TTTTGAAGCATTTCTCCTTTT-----AGAGCTCTGTGTTCTGTTTTTGAGGTAAGCGAAG 57
Query 64 AGACCCAATTTCGATTTGGAGGATAGAGACGAAGAAGAAGACAGCTCCGATGGCTGATCC 123
|| |||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||
Sbjct 58 AGCCCCAATTTCGATTTGGAGGAAAGAGACGAAGAAGAAGAAATCTCCGATGGCTGATCC 117
Query 124 TGAACTAGAAGCTATTAGACAGAGGAGAATGCAAGAGCTCATGGCTCGACAAGGCATGGG 183
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 118 TGAACTAGAAGCTATTAGACAGAGGAGAATGCAAGAGCTGATGGCTCGACAAGGCATGGG 177
Query 184 TAAGCAGGGCAATCAGCAGAATCCAGAGCAAGAGAAACAGCAGGAAGATGCTAAAAGGGA 243
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 178 TAAGCAGGGCAATCAGCAGAATCCAGAGCAAGAGAAACAGCAGGAAGATGCTAGAAGGGA 237
Query 244 AGCTGATGAACGTAGGCAAATGATGCTTAGTCAAGTATTGTCTTCTCAAGCCCGAGAGAG 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 AGCTGATGAACGTAGGCAAATGATGCTTAGTCAAGTATTGTCTTCTCAAGCCCGAGAGAG 297
Query 304 AATTGCTCGAATTGCTCTGGTGAAACCTGAGAAAGCTAGAGGTGTGGAGGATGTTATTTT 363
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 AATTGCTCGAATTGCCCTGGTGAAACCTGAGAAAGCTAGAGGTGTGGAGGATGTTATTTT 357
Query 364 GAGGGCTGCTCAGATGGGACAGATAGTTGAGAAGGTTTCTGAGGAACGGCTTATAACACT 423
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GAGGGCTGCTCAGATGGGGCAGATAGTTGAGAAGGTTTCTGAGGAACGGCTTATAACACT 417
Query 424 GTTGGAACAAATAAACAGCCAAACTACCAAGCAAACGAAAGTCACGGTAAGTACCAACGG 483
|||||||||||||||||||||||||||||| ||||||||||||||| || |||||||
Sbjct 418 GTTGGAACAAATAAACAGCCAAACTACCAAACAAACGAAAGTCACG-TA----CCAACGG 472
Query 484 CGCCGTGGGGTGGACGACGATTAGGAAGGAAGAAGAATATTATGATGTGCTTTGTATATC 543
|||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 473 CGCCGTGGGGTGGACGACGATTAGGAAGGAAGAAGAATATTATGCTGTGCTTTATACATC 532
Query 544 TATGGAGATCTCACTGTT-ATGTTAGTGAGTTCACTTAAGATCTACTTAAATGTTTCTGT 602
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 533 TATGGAGATCTCACTGTTGA-GTTAGTGAGTTCACTTAAGATCTACTTAAATGTTTCTGT 591
Query 603 TCAATATGTTTATTGTGAGTGAATCTTGATTATCTTCCAAACA--CTTGGGATGAGATTA 660
| ||||||||||||||||||||||||| |||||||| |||| | ||| |||||||||||
Sbjct 592 TAAATATGTTTATTGTGAGTGAATCTTAATTATCTTTCAAA-ATGCTTCGGATGAGATTA 650
Query 661 AAGCAATCTGAAACTGAAGCTCTACATTTTTATTTTTGGCATTTCCTCT 709
||| |||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 651 AAGTAATCTGAAACTGAAATTCTGCATTTTTATTTTTGGCATTTCCTCT 699
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30422087766
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5