BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G29860.1 Length=982 Score E Sequences producing significant alignments: (Bits) Value Ahg313633 jgi|Araly1|313633|fgenesh1_pm.C_scaffold_1002413 1103 0.0 Ahg493050 jgi|Araly1|493050|fgenesh2_kg.7__2483__AT4G18170.1 215 6e-55 > Ahg313633 jgi|Araly1|313633|fgenesh1_pm.C_scaffold_1002413 Length=846 Score = 1103 bits (597), Expect = 0.0 Identities = 784/866 (91%), Gaps = 46/866 (5%) Strand=Plus/Plus Query 4 GATGATCATGTTGAGCACAATTATAACACATC-TTTAGAAGAAGTA-CACTTCA-AGAGC 60 ||| ||||||||||||| | | |||||| | ||||||||||||| || |||| | ||| Sbjct 7 GATCATCATGTTGAGCA-GA--AGAACACA-CATTTAGAAGAAGTATCA-TTCACA-AGC 60 Query 61 TTAAGTGATTGCTTACAAAGCTCATTAGTAATGGATTATAACTCACTAGAGAAGGTCTTC 120 ||||||||||||||||||||||||||||||||||||||| | | | ||| ||| Sbjct 61 TTAAGTGATTGCTTACAAAGCTCATTAGTAATGGATTAT-A---A-T---GAA----TTC 108 Query 121 AAATTCTCACCTTATAGTTCCCCTTTTCAATCGGTTTCA----CCG---T----C----A 165 | ||||||||||||||||||||||| |||||||| ||| | | | Sbjct 109 -----C-CACCTTATAGTTCCCCTTTTCAACCGGTTTCACCGTCCGATATGGGCCATATA 162 Query 166 GTAAACAACCCTTACTTAAATCTCACTTCGAATTCTCCGGTGGTCTCATCTTCCTCCAAT 225 |||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||| Sbjct 163 GTAAACAATCCTTACTTAAATCTCAATTCGAATTCTCCAGTGGTCTCATCTTCCTCCAAT 222 Query 226 GAAGGCGAGCCTAAAGAGAACACC-AACGATAAGAGTGACCAAATGGAGGATAACGAAGG 284 |||| ||||| |||||||||| || ||||||||||||||| ||||||||||||||||| Sbjct 223 GAAGCCGAGCTTAAAGAGAAC-CCTGACGATAAGAGTGACCGAATGGAGGATAACGAAGA 281 Query 285 CGACCTACATGGTGTTGGTGAAAGCTCCAAGCAACT-GACAAAACAAGGTaaaaagaaag 343 | ||| ||||||||||||| |||||||||||||| | ||||||||||||||||||||||| Sbjct 282 CAACCAACATGGTGTTGGTAAAAGCTCCAAGCAA-TCGACAAAACAAGGTAAAAAGAAAG 340 Query 344 gagagaagaaagagagagaagTTAGGGTTGCATTTATGACCAAAAGCGAGATTGATCATC 403 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 341 GAGAGAAGAAAGAGAGAGAAGCTAGGGTTGCATTTATGACCAAAAGCGAGATTGATCATC 400 Query 404 TTGAAGATGGTTATAGATGGCGAAAATATGGACAAAAAGCAGTGAAGAACAGCCCTTATC 463 |||||||||||||||||||| |||||||||||||||| || || |||||||| ||||||| Sbjct 401 TTGAAGATGGTTATAGATGGAGAAAATATGGACAAAAGGCCGTCAAGAACAGTCCTTATC 460 Query 464 CAAGGAGTTACTATAGGTGCACAACACAGAAGTGTAACGTGAAGAAACGTGTAGAGAGAT 523 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 461 CAAGGAGTTACTATAGGTGCACAACACAGAAGTGTAACGTGAAGAAACGTGTAGAGAGAT 520 Query 524 CGTTTCAAGATCCGTCGATCGTAATTACAACCTACGAAGGAAAACACAACCATCCGATCC 583 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 521 CATTTCAAGATCCGTCGATCGTAATTACAACCTACGAAGGAAAACACAACCATCCGATCC 580 Query 584 CATCGACGTTGAGAGGAACCGTGGCAGCTGAACATCTACTAGTCCACCGTGGTGGTGGAG 643 | ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| Sbjct 581 CGTCGACGTTGAGAGGAACCGTGGCCGCTGAACATCTACTAGGCCACCGTGGTGGTGGAG 640 Query 644 GCAGTTTACTCCATAGCTTCCCTCGTCACCATCAAGATTTTCTCATGATGAAACATTCTC 703 || |||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| Sbjct 641 GCGGTTTCCTCCATAGCTTCCCTCGTCACCATCAAGAGTTTCTCATGATGAAACATCCTC 700 Query 704 CGGCCAATTATCAATCGGTGGGATCTCTGTCGTACGAACATGGCCATGGGACCTCTAGTT 763 ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| Sbjct 701 TGGCCAATTATCAATCGGTGGGATCTATGTCGTACGAACATGGTCATGGGACCTCTAGTT 760 Query 764 ACAATTTTAATAATAATCAACCAGTTGTTGACTATGGTCTTCTTCAGGACATTGTTCCTT 823 ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| Sbjct 761 ACAATTTTAATAATAATCAACCAGTTGTTGACTATGGCCTTCTTCAGGACATTCTTCCTT 820 Query 824 CAATGTTCTCCAAGAACGAGTCTTGA 849 |||||||||||||| |||| |||||| Sbjct 821 CAATGTTCTCCAAGCACGAATCTTGA 846 > Ahg493050 jgi|Araly1|493050|fgenesh2_kg.7__2483__AT4G18170.1 Length=1200 Score = 215 bits (116), Expect = 6e-55 Identities = 178/208 (86%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 376 TTTATGACCAAAAGCG-AGATTGATCATCTTGAAGATGGTTATAGATGGCGAAAATATGG 434 |||||||| ||||| | || ||||||||||||||||||||||||||||| ||||||| || Sbjct 607 TTTATGACTAAAAGTGAAG-TTGATCATCTTGAAGATGGTTATAGATGGAGAAAATACGG 665 Query 435 ACAAAAAGCAGTGAAGAACAGCCCTTATCCAAGGAGTTACTATAGGTGCACAACACAGAA 494 ||||| || || || || |||||||||||||||||||||||||| || ||||| || || Sbjct 666 CCAAAAGGCTGTAAAAAATAGCCCTTATCCAAGGAGTTACTATAGATGTACAACGCA-AA 724 Query 495 G-TGTAACGTGAAGAAACGTGTAGAGAGATCGTTTCAAGATCCGTCGATCGTAATTACAA 553 | || |||||||||||||| || |||||||||||||||||||| || | || ||||||| Sbjct 725 GGTGCAACGTGAAGAAACGAGTGGAGAGATCGTTTCAAGATCCAACGGTTGTGATTACAA 784 Query 554 CCTACGAAGGAAAACACAACCATCCGAT 581 | ||||| || |||||||||| ||||| Sbjct 785 CTTACGAGGGTCAACACAACCACCCGAT 812 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36483631569 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5