BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29860.1
Length=982
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313633 jgi|Araly1|313633|fgenesh1_pm.C_scaffold_1002413 1103 0.0
Ahg493050 jgi|Araly1|493050|fgenesh2_kg.7__2483__AT4G18170.1 215 6e-55
> Ahg313633 jgi|Araly1|313633|fgenesh1_pm.C_scaffold_1002413
Length=846
Score = 1103 bits (597), Expect = 0.0
Identities = 784/866 (91%), Gaps = 46/866 (5%)
Strand=Plus/Plus
Query 4 GATGATCATGTTGAGCACAATTATAACACATC-TTTAGAAGAAGTA-CACTTCA-AGAGC 60
||| ||||||||||||| | | |||||| | ||||||||||||| || |||| | |||
Sbjct 7 GATCATCATGTTGAGCA-GA--AGAACACA-CATTTAGAAGAAGTATCA-TTCACA-AGC 60
Query 61 TTAAGTGATTGCTTACAAAGCTCATTAGTAATGGATTATAACTCACTAGAGAAGGTCTTC 120
||||||||||||||||||||||||||||||||||||||| | | | ||| |||
Sbjct 61 TTAAGTGATTGCTTACAAAGCTCATTAGTAATGGATTAT-A---A-T---GAA----TTC 108
Query 121 AAATTCTCACCTTATAGTTCCCCTTTTCAATCGGTTTCA----CCG---T----C----A 165
| ||||||||||||||||||||||| |||||||| ||| | | |
Sbjct 109 -----C-CACCTTATAGTTCCCCTTTTCAACCGGTTTCACCGTCCGATATGGGCCATATA 162
Query 166 GTAAACAACCCTTACTTAAATCTCACTTCGAATTCTCCGGTGGTCTCATCTTCCTCCAAT 225
|||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 163 GTAAACAATCCTTACTTAAATCTCAATTCGAATTCTCCAGTGGTCTCATCTTCCTCCAAT 222
Query 226 GAAGGCGAGCCTAAAGAGAACACC-AACGATAAGAGTGACCAAATGGAGGATAACGAAGG 284
|||| ||||| |||||||||| || ||||||||||||||| |||||||||||||||||
Sbjct 223 GAAGCCGAGCTTAAAGAGAAC-CCTGACGATAAGAGTGACCGAATGGAGGATAACGAAGA 281
Query 285 CGACCTACATGGTGTTGGTGAAAGCTCCAAGCAACT-GACAAAACAAGGTaaaaagaaag 343
| ||| ||||||||||||| |||||||||||||| | |||||||||||||||||||||||
Sbjct 282 CAACCAACATGGTGTTGGTAAAAGCTCCAAGCAA-TCGACAAAACAAGGTAAAAAGAAAG 340
Query 344 gagagaagaaagagagagaagTTAGGGTTGCATTTATGACCAAAAGCGAGATTGATCATC 403
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 341 GAGAGAAGAAAGAGAGAGAAGCTAGGGTTGCATTTATGACCAAAAGCGAGATTGATCATC 400
Query 404 TTGAAGATGGTTATAGATGGCGAAAATATGGACAAAAAGCAGTGAAGAACAGCCCTTATC 463
|||||||||||||||||||| |||||||||||||||| || || |||||||| |||||||
Sbjct 401 TTGAAGATGGTTATAGATGGAGAAAATATGGACAAAAGGCCGTCAAGAACAGTCCTTATC 460
Query 464 CAAGGAGTTACTATAGGTGCACAACACAGAAGTGTAACGTGAAGAAACGTGTAGAGAGAT 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 461 CAAGGAGTTACTATAGGTGCACAACACAGAAGTGTAACGTGAAGAAACGTGTAGAGAGAT 520
Query 524 CGTTTCAAGATCCGTCGATCGTAATTACAACCTACGAAGGAAAACACAACCATCCGATCC 583
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 CATTTCAAGATCCGTCGATCGTAATTACAACCTACGAAGGAAAACACAACCATCCGATCC 580
Query 584 CATCGACGTTGAGAGGAACCGTGGCAGCTGAACATCTACTAGTCCACCGTGGTGGTGGAG 643
| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 581 CGTCGACGTTGAGAGGAACCGTGGCCGCTGAACATCTACTAGGCCACCGTGGTGGTGGAG 640
Query 644 GCAGTTTACTCCATAGCTTCCCTCGTCACCATCAAGATTTTCTCATGATGAAACATTCTC 703
|| |||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 641 GCGGTTTCCTCCATAGCTTCCCTCGTCACCATCAAGAGTTTCTCATGATGAAACATCCTC 700
Query 704 CGGCCAATTATCAATCGGTGGGATCTCTGTCGTACGAACATGGCCATGGGACCTCTAGTT 763
||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 701 TGGCCAATTATCAATCGGTGGGATCTATGTCGTACGAACATGGTCATGGGACCTCTAGTT 760
Query 764 ACAATTTTAATAATAATCAACCAGTTGTTGACTATGGTCTTCTTCAGGACATTGTTCCTT 823
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 761 ACAATTTTAATAATAATCAACCAGTTGTTGACTATGGCCTTCTTCAGGACATTCTTCCTT 820
Query 824 CAATGTTCTCCAAGAACGAGTCTTGA 849
|||||||||||||| |||| ||||||
Sbjct 821 CAATGTTCTCCAAGCACGAATCTTGA 846
> Ahg493050 jgi|Araly1|493050|fgenesh2_kg.7__2483__AT4G18170.1
Length=1200
Score = 215 bits (116), Expect = 6e-55
Identities = 178/208 (86%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 376 TTTATGACCAAAAGCG-AGATTGATCATCTTGAAGATGGTTATAGATGGCGAAAATATGG 434
|||||||| ||||| | || ||||||||||||||||||||||||||||| ||||||| ||
Sbjct 607 TTTATGACTAAAAGTGAAG-TTGATCATCTTGAAGATGGTTATAGATGGAGAAAATACGG 665
Query 435 ACAAAAAGCAGTGAAGAACAGCCCTTATCCAAGGAGTTACTATAGGTGCACAACACAGAA 494
||||| || || || || |||||||||||||||||||||||||| || ||||| || ||
Sbjct 666 CCAAAAGGCTGTAAAAAATAGCCCTTATCCAAGGAGTTACTATAGATGTACAACGCA-AA 724
Query 495 G-TGTAACGTGAAGAAACGTGTAGAGAGATCGTTTCAAGATCCGTCGATCGTAATTACAA 553
| || |||||||||||||| || |||||||||||||||||||| || | || |||||||
Sbjct 725 GGTGCAACGTGAAGAAACGAGTGGAGAGATCGTTTCAAGATCCAACGGTTGTGATTACAA 784
Query 554 CCTACGAAGGAAAACACAACCATCCGAT 581
| ||||| || |||||||||| |||||
Sbjct 785 CTTACGAGGGTCAACACAACCACCCGAT 812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36483631569
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5