BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29920.1
Length=1176
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473203 jgi|Araly1|473203|fgenesh2_kg.1__3157__AT1G29910.1 1604 0.0
Ahg473204 jgi|Araly1|473204|fgenesh2_kg.1__3158__AT1G29930.1 1271 0.0
Ahg482401 jgi|Araly1|482401|fgenesh2_kg.4__1461__AT1G29910.1 985 0.0
Ahg482403 jgi|Araly1|482403|fgenesh2_kg.4__1463__AT2G34430.1 933 0.0
> Ahg473203 jgi|Araly1|473203|fgenesh2_kg.1__3157__AT1G29910.1
Length=1008
Score = 1604 bits (868), Expect = 0.0
Identities = 965/1012 (95%), Gaps = 5/1012 (0%)
Strand=Plus/Plus
Query 16 ACTCTCACTCACAAGTTAGTCATaaaaaaaaaaaaaacacaaaaaaGTTTCAATGGCCGC 75
|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 1 ACTCTCACTCACAAGTTAGTCACCAAAAAAAAAAAAACACAAAAAATTTTCAATGGCCGC 60
Query 76 CTCAACAATGGCTCTCTCCTCCCCTGCTTTCGCCGGAAAGGCTGTGAACCTTTCCCCTGC 135
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 61 CTCAACAATGGCTCTCTCCTCCCCTGCCTTCGCCGGAAAGGCTGTGAACCTTTCCCCCGC 120
Query 136 GGCATCAGAAGTCCTTGGAAGCGGCCGTGTGACAATGAGGAAGACTGTTGCCAAGCCAAA 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGCATCAGAAGTCCTTGGAAGCGGCCGTGTGACAATGAGGAAGACTGTTGCCAAGCCAAA 180
Query 196 GGGTCCATCAGGCAGCCCATGGTACGGATCCGACCGAGTCAAGTACTTGGGTCCATTCTC 255
|||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct 181 GGGTCCATCAGGCAGCCCATGGTACGGATCTGACCGTGTCAAGTACTTGGGCCCATTCTC 240
Query 256 TGGCGAGTCACCCAGCTACCTTACCGGAGAGTTCCCTGGAGACTACGGATGGGACACAGC 315
||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 241 TGGCGAGCCACCGAGCTACCTTACCGGAGAGTTCCCCGGAGACTACGGATGGGACACCGC 300
Query 316 TGGTCTATCCGCTGACCCCGAGACATTCGCAAGGAACCGTGAGCTAGAAGTTATCCACAG 375
|| || || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CGGACTCTCAGCCGACCCCGAGACATTCGCAAGGAACCGTGAGCTAGAAGTTATCCACAG 360
Query 376 CAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTCTTCCCTGAGCTTTTGGCCAGGAACGG 435
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 361 CAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTTTTGGCCAGGAACGG 420
Query 436 AGTCAAGTTTGGAGAGGCAGTTTGGTTCAAGGCTGGTTCACAGATCTTCAGCGATGGAGG 495
||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 421 AGTCAAGTTCGGAGAGGCCGTTTGGTTCAAGGCCGGTTCACAGATCTTCAGCGATGGAGG 480
Query 496 GCTCGATTACTTGGGAAACCCTAGCTTGGTTCACGCTCAGAGCATTTTGGCCATTTGGGC 555
||||||||||||||||||||||||||| || |||||||||||||| ||||| ||||||||
Sbjct 481 GCTCGATTACTTGGGAAACCCTAGCTTAGTCCACGCTCAGAGCATCTTGGCGATTTGGGC 540
Query 556 CACACAAGTTATTTTGATGGGAGCCGTTGAAGGTTACAGAGTCGCAGGAAATGGGCCATT 615
||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 541 CACTCAAGTTATCTTGATGGGAGCCGTTGAAGGCTACAGAGTCGCAGGAAATGGGCCATT 600
Query 616 GGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGCAGTTTCGACCCATTGGGTTTGGCTAC 675
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 601 GGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGTAGCTTCGACCCATTGGGTTTGGCTAC 660
Query 676 CGACCCAGAGGCCTTCGCTGAGTTGAAGGTAAAGGAGCTCAAGAACGGAAGATTGGCTAT 735
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 661 CGACCCAGAGGCCTTCGCTGAGTTGAAGGTGAAGGAGCTCAAGAACGGAAGATTGGCTAT 720
Query 736 GTTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACTGGTAAGGGACCGATAGAGAA 795
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 721 GTTCTCTATGTTTGGATTCTTCGTTCAAGCCATTGTCACTGGTAAGGGACCGATAGAGAA 780
Query 796 CCTTGCTGACCATTTGGCCGATCCAGTCAACAACAACGCTTGGGCCTTTGCCACCAACTT 855
||||||||||||||||||||||||||| | ||||||||| |||||||| |||||||||||
Sbjct 781 CCTTGCTGACCATTTGGCCGATCCAGTTACCAACAACGCATGGGCCTTCGCCACCAACTT 840
Query 856 TGTTCCCGGAAAGTGAGCCAAGTTCTATCTGTTTGTAATTTACTTTTCTTTCAATCTTTT 915
|||||||||||||||||||||||| |||| ||||||||||| ||||| || |||||||||
Sbjct 841 TGTTCCCGGAAAGTGAGCCAAGTTTTATCCGTTTGTAATTTGCTTTT-TT-CAATCTTTT 898
Query 916 GAATTCGAGTGAGAGACAGGAGGAGAAAGAGTAGGTTTGTGTTTGTGGTGGATGGTA-GA 974
||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||
Sbjct 899 GAATTCGAGTGAGAGACAGGAGGAGAAAGAGCAGGTTTGTGTTTGTGATGGATGGTTTGA 958
Query 975 GACTTTCAGATGTAAATTTGCAAAGACTTTGTATGATTTGTCATTAATCAAA 1026
|||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 959 GACTTTCA-ATGTAAATTTGCAA-GACTTTGTATGATTTGTCATTAATCAAA 1008
> Ahg473204 jgi|Araly1|473204|fgenesh2_kg.1__3158__AT1G29930.1
Length=1002
Score = 1271 bits (688), Expect = 0.0
Identities = 779/824 (95%), Gaps = 1/824 (0%)
Strand=Plus/Plus
Query 65 TCAATGGCCGCCTCAACAATGGCTCTCTCCTCCCCTGCTTTCGCCGGAAAGGCTGTGAAC 124
||||||||||||||||| |||||||||||||||||||| |||||||||||||| || ||
Sbjct 61 TCAATGGCCGCCTCAACCATGGCTCTCTCCTCCCCTGCCTTCGCCGGAAAGGCCGTCAAG 120
Query 125 CTTTCCCCTGCGGCATCAGAAGTCCTTGGAAGCGGCCGTGTGACAATGAGGAAGACTGTT 184
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 121 CTTTCCCCCGCGGCATCAGACGTCCTTGGAAGCGGCCGTGTGACAATGAGGAAGACAACT 180
Query 185 GCCAAGCCAAAGGGTCCATCAGGCAGCCCATGGTACGGATCCGACCGAGTCAAGTACTTG 244
|||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 181 GCCAAGCCAAAGGGCCCATCAGGCAGCCCATGGTACGGATCTGACCGTGTCAAGTACTTG 240
Query 245 GGTCCATTCTCTGGCGAGTCACCCAGCTACCTTACCGGAGAGTTCCCTGGAGACTACGGA 304
|| ||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||
Sbjct 241 GGCCCATTCTCTGGCGAGCCACCGAGCTACCTTACCGGAGAGTTCCCCGGAGACTACGGA 300
Query 305 TGGGACACAGCTGGTCTATCCGCTGACCCCGAGACATTCGCAAGGAACCGTGAGCTAGAA 364
|||||||| || || || || || ||||||||||||||||||||||||||||||||||||
Sbjct 301 TGGGACACCGCCGGACTCTCAGCCGACCCCGAGACATTCGCAAGGAACCGTGAGCTAGAA 360
Query 365 GTTATCCACAGCAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTCTTCCCTGAGCTTTTG 424
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 GTTATCCACAGCAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTTTTG 420
Query 425 GCCAGGAACGGAGTCAAGTTTGGAGAGGCAGTTTGGTTCAAGGCTGGTTCACAGATCTTC 484
|||||||||||||||||||| |||||||| |||||||||||||| || || |||||||||
Sbjct 421 GCCAGGAACGGAGTCAAGTTCGGAGAGGCCGTTTGGTTCAAGGCCGGCTCTCAGATCTTC 480
Query 485 AGCGATGGAGGGCTCGATTACTTGGGAAACCCTAGCTTGGTTCACGCTCAGAGCATTTTG 544
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 481 AGCGATGGAGGGCTCGATTACTTGGGAAACCCTAGCTTGGTCCACGCTCAGAGCATCTTG 540
Query 545 GCCATTTGGGCCACACAAGTTATTTTGATGGGAGCCGTTGAAGGTTACAGAGTCGCAGGA 604
|| ||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 541 GCGATTTGGGCCACTCAAGTTATCTTGATGGGAGCCGTTGAAGGCTACAGAGTCGCAGGA 600
Query 605 AATGGGCCATTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGCAGTTTCGACCCATTG 664
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 601 AATGGGCCATTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGTAGCTTCGACCCATTG 660
Query 665 GGTTTGGCTACCGACCCAGAGGCCTTCGCTGAGTTGAAGGTAAAGGAGCTCAAGAACGGA 724
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 661 GGTTTGGCTACCGACCCAGAGGCCTTCGCTGAGTTGAAGGTGAAGGAGCTCAAGAACGGA 720
Query 725 AGATTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACTGGTAAGGGA 784
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 721 AGATTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATTGTCACTGGTAAGGGA 780
Query 785 CCGATAGAGAACCTTGCTGACCATTTGGCCGATCCAGTCAACAACAACGCTTGGGCCTTT 844
|||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||
Sbjct 781 CCGATAGAGAACCTTGCTGACCATTTGGCCGATCCAGTTACCAACAACGCATGGGCCTTC 840
Query 845 GCCACCAACTTTGTTCCCGGAAAGTGAGCCAAGTTCT-ATCTGT 887
||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 841 GCCACCAACTTTGTTCCCGGAAAGTGAGCCAAGTTTTTATCTGT 884
> Ahg482401 jgi|Araly1|482401|fgenesh2_kg.4__1461__AT1G29910.1
Length=798
Score = 985 bits (533), Expect = 0.0
Identities = 672/741 (91%), Gaps = 2/741 (0%)
Strand=Plus/Plus
Query 134 GCGGCATCAGAAGTCCTTGGAAGCGGCCGTGTGACAATGAGGAAGACTGTTGCCAAGCCA 193
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GCGGCATCAGATGTCCTCGGAAGCGGCCGTGTGACAATGAGGAAGACTGTTGCCAAGCCA 60
Query 194 AAGGGTCCATCAGGCAGCCCATGGTACGGATCCGACCGAGTCAAGTACTTGGGTCCATTC 253
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 61 AAGGGTCCATCAGGCAGCCCATGGTACGGATCTGACCGTGTCAAGTACTTGGGTCCATTC 120
Query 254 TCTGGCGAGTCACCC-AGCTACCTTACCGGAGAGTTCCCTGGAGACTACGGATGGGACAC 312
|| |||||| | ||| ||||||||||||||||||||||| || |||||||||||||||||
Sbjct 121 TCCGGCGAGCC-CCCGAGCTACCTTACCGGAGAGTTCCCCGGTGACTACGGATGGGACAC 179
Query 313 AGCTGGTCTATCCGCTGACCCCGAGACATTCGCAAGGAACCGTGAGCTAGAAGTTATCCA 372
|| ||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 180 CGCCGGTCTATCCGCTGACCCAGAGACCTTCGCCAGGAACCGTGAGCTAGAAGTTATCCA 239
Query 373 CAGCAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTCTTCCCTGAGCTTTTGGCCAGGAA 432
|||||| ||||||||||||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 240 CAGCAGATGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTATTGGCTAGGAA 299
Query 433 CGGAGTCAAGTTTGGAGAGGCAGTTTGGTTCAAGGCTGGTTCACAGATCTTCAGCGATGG 492
|||||| ||||| ||||| || |||||||||||||||||||| |||||||||||||| ||
Sbjct 300 CGGAGTGAAGTTCGGAGAAGCGGTTTGGTTCAAGGCTGGTTCGCAGATCTTCAGCGACGG 359
Query 493 AGGGCTCGATTACTTGGGAAACCCTAGCTTGGTTCACGCTCAGAGCATTTTGGCCATTTG 552
||| | || |||||||| ||||| |||||||| |||||||||||||| || ||||||||
Sbjct 360 AGGATTGGACTACTTGGGCAACCCGAGCTTGGTCCACGCTCAGAGCATCTTAGCCATTTG 419
Query 553 GGCCACACAAGTTATTTTGATGGGAGCCGTTGAAGGTTACAGAGTCGCAGGAAATGGGCC 612
||| || ||||| || | |||||||| |||||||| ||||||||||| |||||||| ||
Sbjct 420 GGCTACTCAAGTGATCCTCATGGGAGCTGTTGAAGGCTACAGAGTCGCCGGAAATGGCCC 479
Query 613 ATTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGCAGTTTCGACCCATTGGGTTTGGC 672
|||||||||||| ||||||||||||||||| |||||||| |||||||||||||| | ||
Sbjct 480 ATTGGGAGAGGCAGAGGACTTGCTTTACCCAGGTGGCAGCTTCGACCCATTGGGCCTCGC 539
Query 673 TACCGACCCAGAGGCCTTCGCTGAGTTGAAGGTAAAGGAGCTCAAGAACGGAAGATTGGC 732
||| ||||| ||||| ||||| ||||||||||| ||||||||||||||||| || |||||
Sbjct 540 TACTGACCCCGAGGCTTTCGCAGAGTTGAAGGTGAAGGAGCTCAAGAACGGGAGGTTGGC 599
Query 733 TATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACTGGTAAGGGACCGATAGA 792
|||||||||||||||||||||||||||||||||||||||||| || |||||||| | ||
Sbjct 600 TATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACCGGAAAGGGACCTTTGGA 659
Query 793 GAACCTTGCTGACCATTTGGCCGATCCAGTCAACAACAACGCTTGGGCCTTTGCCACCAA 852
|||||| || |||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 660 GAACCTCGCCGACCATTTGGCCGATCCAGTCAACAACAACGCATGGGCCTTCGCCACCAA 719
Query 853 CTTTGTTCCCGGAAAGTGAGC 873
||| || |||||||||| |||
Sbjct 720 CTTCGTCCCCGGAAAGTAAGC 740
> Ahg482403 jgi|Araly1|482403|fgenesh2_kg.4__1463__AT2G34430.1
Length=987
Score = 933 bits (505), Expect = 0.0
Identities = 711/811 (88%), Gaps = 11/811 (1%)
Strand=Plus/Plus
Query 66 CAATGGCCGCCTCAACAATGGCTCTCTCCTCCCCTGCTTTCGCCGGAAAGGCTGTGAACC 125
||||||||||||| ||||||||||||||||| |||||| | ||||||||||| || || |
Sbjct 44 CAATGGCCGCCTCGACAATGGCTCTCTCCTCTCCTGCTATGGCCGGAAAGGCCGTTAAGC 103
Query 126 TTTCCCCTGCGGCATCAGAAGTCCTTGGAAGCGGCCGTGTGACAATGAG-GAAGACTGTT 184
| ||||| ||||| || ||||| |||||| |||||| || || ||| | ||| | |
Sbjct 104 TATCCCCGGCGGCCTCCGAAGTATTTGGAATCGGCCGAGTTACCATGCGCAAAG-C--CT 160
Query 185 GCCAAGCCAAAGGGTCCATCAGGCAGCCCATGGTACGGATCCGACCGAGTCAAGTACTTG 244
|||| || | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 161 -CCAAACCCACCGGTCCATCAGGCAGCCCATGGTACGGATCCGACCGAGTCAAGTACTTG 219
Query 245 GGTCCATTCTCTGGCGAGTCACCCAGCTACCTTACCGGAGAGTTCCCTGGAGACTACGGA 304
||||||||||| || ||| | || |||||||| || ||||| ||||| || ||||||||
Sbjct 220 GGTCCATTCTCCGGTGAGCCTCCGAGCTACCTCACTGGAGAATTCCCCGGTGACTACGGG 279
Query 305 TGGGACACAGCTGGTCTATCCGCTGACCCCGAGACATTCGCAAGGAACCGTGAGCTAGAA 364
|||||||| || ||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct 280 TGGGACACTGCCGGTCTATCCGCAGACCCCGAGACCTTCGCCAGGAACCGTGAGCTAGAA 339
Query 365 GTTATCCACAGCAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTCTTCCCTGAGCTTTTG 424
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 340 GTTATCCACAGCAGATGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTGTTG 399
Query 425 GC-CAGGAACGGAGTCAAGTTTGGAGAGGCAGTTTGGTTCAAGGCTGGTTCACAGATCTT 483
|| | | || |||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 400 GCTC-GCAATGGAGTCAAATTCGGAGAGGCAGTTTGGTTCAAGGCTGGTTCACAGATCTT 458
Query 484 CAGCGATGGAGGGCTCGATTACTTGGGAAACCCTAGCTTGGTTCACGCTCAGAGCATTTT 543
|||||||||||| | || |||||||| || || |||||||| |||||||||||||| ||
Sbjct 459 CAGCGATGGAGGATTGGACTACTTGGGCAATCCGAGCTTGGTCCACGCTCAGAGCATCTT 518
Query 544 GGCCATTTGGGCCACACAAGTTATTTTGATGGGAGCCGTTGAAGGTTACAGAGTCGCAGG 603
|||||||||||||| ||||| || | |||||||| |||||||| ||||||||||| ||
Sbjct 519 AGCCATTTGGGCCACTCAAGTGATCCTCATGGGAGCTGTTGAAGGCTACAGAGTCGCCGG 578
Query 604 AAATGGGCCATTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGCAG-TTTCGACCCAT 662
|||||| |||||||||||||| ||||||||||||||||| |||||||| ||| |||||||
Sbjct 579 AAATGGCCCATTGGGAGAGGCAGAGGACTTGCTTTACCCAGGTGGCAGCTTT-GACCCAT 637
Query 663 TGGGT-TTGGCTACCGACCCAGAGGCCTTCGCTGAGTTGAAGGTAAAGGAGCTCAAGAAC 721
|||| ||| |||| ||||| ||||| || || ||||||||||| |||||||||||||||
Sbjct 638 TGGGCCTTG-CTACTGACCCCGAGGCGTTTGCAGAGTTGAAGGTGAAGGAGCTCAAGAAC 696
Query 722 GGAAGATTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACTGGTAAG 781
||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| || |||
Sbjct 697 GGAAGGTTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAGGCCATTGTCACCGGAAAG 756
Query 782 GGACCGATAGAGAACCTTGCTGACCATTTGGCCGATCCAGTCAACAACAACGCTTGGGCC 841
|||||| | ||||| ||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 757 GGACCGTTGGAGAATCTTGCTGACCACTTGGCCGATCCAGTCAACAACAACGCATGGGCC 816
Query 842 TTTGCCACCAACTTTGTTCCCGGAAAGTGAG 872
|| || |||||||| || |||||||||||||
Sbjct 817 TTCGCTACCAACTTCGTCCCCGGAAAGTGAG 847
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43879477467
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5