BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29950.1
Length=2131
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473207 jgi|Araly1|473207|fgenesh2_kg.1__3161__AT1G29950.1 2588 0.0
> Ahg473207 jgi|Araly1|473207|fgenesh2_kg.1__3161__AT1G29950.1
Length=1858
Score = 2588 bits (1401), Expect = 0.0
Identities = 1759/1919 (92%), Gaps = 76/1919 (4%)
Strand=Plus/Plus
Query 74 AAAGCTTTAGTTTTTACGCATCACCGATTCATTTGATCCAAAGGGTTTTTGATTTCTTCT 133
||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1 AAAGCTTAAGTTTTTACGCATCACCGATTCATTTGATCCAAAGGG-TTTTCATTTCTTCT 59
Query 134 ACGAGTTTGTGAGAAGAGGAACGGTATTT---AATACACTTACAAATTTGATATTGGAAG 190
||||||||| ||||||||||||||||||| ||||||| || ||| ||||||||| |||
Sbjct 60 ACGAGTTTGCGAGAAGAGGAACGGTATTTAAAAATACAC-TAAAAACTTGATATTGCAAG 118
Query 191 AACCAAAGATGCCCTGGACAGCATTCTTCATGTTTTTCAACAGAACTTGCACTCGTCTGG 250
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 119 AACCAAAGATGCCCTGGACAGCCTTCTTCATGTTTTTCAACAGGACTTGCACTCGTCTGG 178
Query 251 TTGTCTTTTTCCTCGTTATTCTGTAATTTTGTTCCTTTCAGGTGAGCCAGCCTCTCATTT 310
|||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||
Sbjct 179 TTGTCTTTTTCCTCGTTATTCTGTAAATTTGATCCTTTCAGGTGAGCCAGCTTCTCATTT 238
Query 311 CACATCTTGTGTTTTTGTCTTACATTGGTACCTT-G---TGGAAGCAAATTTTGTTGTTG 366
|||||||| |||||| ||| | || | || ||| | || || ||||| || ||||||
Sbjct 239 CACATCTTCTGTTTTGGTC-TGCA--GTTA-CTTAGTCATGAAAACAAATCTTCTTGTTG 294
Query 367 CCACCTTATATACAGCTTCTTGTGTTAAAACTATTGG-CATCTCTTCCTTGTTTTGCAGG 425
||||||||| | |||||||| |||| |||||||||| || ||| |||||||||||||
Sbjct 295 CCACCTTATTTTTAGCTTCTTTTGTTTAAACTATTGGTGTTC-CTTTCTTGTTTTGCAGG 353
Query 426 TGTTGTTTCCGGAATTCGGAATAGTTCTTTGTTGTTGTGCTTATTATACTGGTTAGTTTG 485
|||||||||||| || |||| ||| |||||||||||||||||||| |||||||||| ||
Sbjct 354 TGTTGTTTCCGGTATCCGGAGTAGCTCTTTGTTGTTGTGCTTATTTTACTGGTTAG--TG 411
Query 486 TGAGAATGTGCATTGTTGGAAACAAGAAGGGAAACCGATCATTGAAGGAAATAGGAACTT 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 TGAGAATGTGCATTGTTGGAAACAAGAAGGGAAACCGATCATTGAAGGAAATAGGAACTT 471
Query 546 TTATGATGACTACATGTTTCATTGCTAATTACCAATCCGTTCAAGTTTGCCAGGCTGAAT 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 TTATGATGACTACATGTTTCATTGCTAATTACCAATCCGTTCAAGTTTGCCAGGCTGAAT 531
Query 606 ATTTCAGACAGTTGCTTAAGCCTGTAACGTAGTCTAGCGTCTGGAGTTTTCGGAAATT-G 664
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 532 ATTTCAGACAGTTGCTTAAGCCTGTAACGTAGTCTAGCGTCTGGAGTTTTCGGAAATTGG 591
Query 665 GGGTTTTGAGCGGCTATCTACTTTTGATTTCGAAAAAATTTACTGTGAGTTGTTAAAGAG 724
|||||||||||||||||||||||||||||||| || | || || |||||
Sbjct 592 GGGTTTTGAGCGGCTATCTACTTTTGATTTCG----AA---A----GA---ATT-AAGAG 636
Query 725 TCTGGTATTCTGAAGAGCTGTCTGTGGGGGAGCTTCTGGTTTGGGGGGTAAGGGCTCTGG 784
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 637 TCTGGTATTCTGAAGAGCTG--TGTGGGGGAGCTTCTGGTTTTGGGGGTAAGGGCTCTGG 694
Query 785 TGGAAACTCGTGATATCTTTAGTATGATGGCCATAACTTGATATAGCATTTGGTTCCGTG 844
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 695 TGGAAATTCGTGATATCTTTAGTATGATGGCCATAACTTGATATAGCATTTGGTT-CGAC 753
Query 845 TGTCAACTTAGTGTAGTAGTAACTGAGCAGCTGGAAGCTTACAAAGGCGACAAATCGGTA 904
||||||||||||||||||||||||||||||||||||||||||||| | | |||||
Sbjct 754 TGTCAACTTAGTGTAGTAGTAACTGAGCAGCTGGAAGCTTACAAA-G-G------CGGTA 805
Query 905 GTAGAAAATATTCAAGCAGCTTGCAGTTTGAGGTGTACAACTTGTTTTTCTCTTTGCGTT 964
|| ||||| ||| ||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 806 GTCGAAAA-ATTTAAGCAGCCTGCAGTTTGAGGTGTACAACTTGTTTTTCTCTTTGTGTT 864
Query 965 TCCTTTTTTACGTTTGCACGGGTTTTCTGATGCAGAACAATCAGTTTCCTCACTTCTCAG 1024
| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 865 T-CGCTTTTACCTTTGCACGGGTTTTCTGATGCAGAACAATCAGTTTCCTCACTTCTCAG 923
Query 1025 ATGAAGTGGGTGACAGAAATATGCACAACCCGTATGCATCAGGGTCATCCTATGATGCTT 1084
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 924 ATGAAGTGGGTGACAGAAATATGCACAATCCGTATGCATCAGGGTCATCCTTTGATGCTT 983
Query 1085 TGTTCCCACCATGTGCAAAGTTGCCATACCATGGTGTTGAACTTCAACCGTCTGCGGTCT 1144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 984 TGTTCCCACCATGTGCAAAGTTGCCATACCATGGTGTTGAACTTCAACCGTCTGCGGTCT 1043
Query 1145 GTCCAAAGAACTTTGTCATCTTCGATCAAACATATGACCGCAGCCAAGTGATGTACCATC 1204
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1044 GTCCAAAGAATTTTGTCATCTTCGATCAAACGTATGACCGCAGCCAAGTGATGTACCATC 1103
Query 1205 CTGAGCTGACTCATAAGCTCATGAATACCCCTTCGTTGAACAATTTAGCTTCGACGTTTC 1264
||| ||||||||| ||||||||||||||||| || |||||||||||||||||||| ||||
Sbjct 1104 CTGGGCTGACTCACAAGCTCATGAATACCCCATCATTGAACAATTTAGCTTCGACATTTC 1163
Query 1265 AGAACGAGTA-TGTTGGGGGAAGTTATGGTAACTATGGTAACTATGAGCAAGAAGTATCC 1323
|||||||||| | | |||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1164 AGAACGAGTACTCT-GGGGGAAGTTATGGTAACTATGGTAACTATGACCAAGAAGCATCC 1222
Query 1324 TCTTCTTATCAAGAAGATCCAAATGAGATCGATGCTCTCTTGAGCGCAGATGAAGATTAT 1383
|||||||||||||| ||||| |||||||| ||||| ||||||||||||||||| ||||||
Sbjct 1223 TCTTCTTATCAAGAGGATCCGAATGAGATTGATGCCCTCTTGAGCGCAGATGAGGATTAT 1282
Query 1384 GAAGAGAATGATGATAATGAAGGTGAAGAGGATGGTGGTGATTCAGAAGAAGTCAGCACT 1443
||||| |||||||||||||||||| |||||||||| |||||||||| |||||||||
Sbjct 1283 GAAGA---TGATGATAATGAAGGTGATGAGGATGGTG---ATTCAGAAGAGGTCAGCACT 1336
Query 1444 GCTCGTACTTCTTCCAGGGATTATGGAAACACCACAGCAGAATCTTGTTGTTCCAGTTAT 1503
||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1337 GCTCGTAATTCTTCCAGGGATTATGGAAACACCTCAGCAGAATCTTGTTGTTCCAGCTAT 1396
Query 1504 GGTTacaacaacaacaacaacaacaacTCAAGGAAGCAGAGTTTATCGGGCAGTGCTAGT 1563
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1397 GGGTATAACAACAACAACAACAACAACTCAAGGAAGCAGAGTTTATCGGGCAGTGCTAGT 1456
Query 1564 AGTAGTAACAATGATGGGAAAGGACGTAAAAAGATGAAGAAGATGATGGGAGTATTGAGG 1623
|||| | |||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1457 AGTA--A-CAATGATGGGAAAGGACGGAAAAAGATGAAGAAGATGATGGGAGTGTTGAGG 1513
Query 1624 AGAATTGTCCCTGGAGGAGAACAGATGAATACAGCTTGCGTTCTTGATGAAGCTGTTCAG 1683
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1514 AGAATTGTCCCGGGAGGAGAACAGATGAATACAGCTTGCGTTCTTGATGAAGCTGTTCAG 1573
Query 1684 TATCTCAAGTCACTTAAAATCGAAGCTCAGAAACTTGGCGTTGGACATTTCTCAAACCAA 1743
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1574 TATCTCAAGTCACTTAAAATCGAAGCACAGAAACTTGGCGTTGGACATTTCTCAAACCAA 1633
Query 1744 TCTTGAATGCTACCGATATTCGGTTCTTCCATCACTATTGTTTCT-CGGGAGGTAAATCA 1802
||||||||||||| ||||||| |||||||| ||||||||||||| || ||||||||||
Sbjct 1634 CCTTGAATGCTACCAATATTCG-TTCTTCCACCACTATTGTTTCTTCGA-AGGTAAATCA 1691
Query 1803 TCGGTCTAGCGCT-ATCTGGACCTTTCTCT-T-TATTTTCCTCCCTCTATACTCACTTCC 1859
|||||| |||||| |||||||||||||||| | ||| |||||||||||| ||| |||||
Sbjct 1692 TCGGTCCAGCGCTTATCTGGACCTTTCTCTCTCTATATTCCTCCCTCTA--CTCTCTTCC 1749
Query 1860 TTTTGTTGGCAGGATGGTATCTATTTTATGTTTGAATCTCTCTATGTATTTTGCTTTTTG 1919
||||| |||||||||||||| |||||||| |||||||||| | |||||||||||| |
Sbjct 1750 TTTTG----CAGGATGGTATCTACTTTATGTT-GAATCTCTCT-TATATTTTGCTTTT-G 1802
Query 1920 TGTGTTACTGCTTCGATGAAGAAGCAAG-GTTTGAACAAGTACTTGTGGATTTGATTTG 1977
||| | | ||||||||||||||||| | ||||| ||||||||||||||||||||||||
Sbjct 1803 TGT-T-ATTGCTTCGATGAAGAAGCT-GTGTTTGCACAAGTACTTGTGGATTTGATTTG 1858
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80179965725
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5