BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G29950.1 Length=2131 Score E Sequences producing significant alignments: (Bits) Value Ahg473207 jgi|Araly1|473207|fgenesh2_kg.1__3161__AT1G29950.1 2588 0.0 > Ahg473207 jgi|Araly1|473207|fgenesh2_kg.1__3161__AT1G29950.1 Length=1858 Score = 2588 bits (1401), Expect = 0.0 Identities = 1759/1919 (92%), Gaps = 76/1919 (4%) Strand=Plus/Plus Query 74 AAAGCTTTAGTTTTTACGCATCACCGATTCATTTGATCCAAAGGGTTTTTGATTTCTTCT 133 ||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||| Sbjct 1 AAAGCTTAAGTTTTTACGCATCACCGATTCATTTGATCCAAAGGG-TTTTCATTTCTTCT 59 Query 134 ACGAGTTTGTGAGAAGAGGAACGGTATTT---AATACACTTACAAATTTGATATTGGAAG 190 ||||||||| ||||||||||||||||||| ||||||| || ||| ||||||||| ||| Sbjct 60 ACGAGTTTGCGAGAAGAGGAACGGTATTTAAAAATACAC-TAAAAACTTGATATTGCAAG 118 Query 191 AACCAAAGATGCCCTGGACAGCATTCTTCATGTTTTTCAACAGAACTTGCACTCGTCTGG 250 |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 119 AACCAAAGATGCCCTGGACAGCCTTCTTCATGTTTTTCAACAGGACTTGCACTCGTCTGG 178 Query 251 TTGTCTTTTTCCTCGTTATTCTGTAATTTTGTTCCTTTCAGGTGAGCCAGCCTCTCATTT 310 |||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||| Sbjct 179 TTGTCTTTTTCCTCGTTATTCTGTAAATTTGATCCTTTCAGGTGAGCCAGCTTCTCATTT 238 Query 311 CACATCTTGTGTTTTTGTCTTACATTGGTACCTT-G---TGGAAGCAAATTTTGTTGTTG 366 |||||||| |||||| ||| | || | || ||| | || || ||||| || |||||| Sbjct 239 CACATCTTCTGTTTTGGTC-TGCA--GTTA-CTTAGTCATGAAAACAAATCTTCTTGTTG 294 Query 367 CCACCTTATATACAGCTTCTTGTGTTAAAACTATTGG-CATCTCTTCCTTGTTTTGCAGG 425 ||||||||| | |||||||| |||| |||||||||| || ||| ||||||||||||| Sbjct 295 CCACCTTATTTTTAGCTTCTTTTGTTTAAACTATTGGTGTTC-CTTTCTTGTTTTGCAGG 353 Query 426 TGTTGTTTCCGGAATTCGGAATAGTTCTTTGTTGTTGTGCTTATTATACTGGTTAGTTTG 485 |||||||||||| || |||| ||| |||||||||||||||||||| |||||||||| || Sbjct 354 TGTTGTTTCCGGTATCCGGAGTAGCTCTTTGTTGTTGTGCTTATTTTACTGGTTAG--TG 411 Query 486 TGAGAATGTGCATTGTTGGAAACAAGAAGGGAAACCGATCATTGAAGGAAATAGGAACTT 545 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 412 TGAGAATGTGCATTGTTGGAAACAAGAAGGGAAACCGATCATTGAAGGAAATAGGAACTT 471 Query 546 TTATGATGACTACATGTTTCATTGCTAATTACCAATCCGTTCAAGTTTGCCAGGCTGAAT 605 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 472 TTATGATGACTACATGTTTCATTGCTAATTACCAATCCGTTCAAGTTTGCCAGGCTGAAT 531 Query 606 ATTTCAGACAGTTGCTTAAGCCTGTAACGTAGTCTAGCGTCTGGAGTTTTCGGAAATT-G 664 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 532 ATTTCAGACAGTTGCTTAAGCCTGTAACGTAGTCTAGCGTCTGGAGTTTTCGGAAATTGG 591 Query 665 GGGTTTTGAGCGGCTATCTACTTTTGATTTCGAAAAAATTTACTGTGAGTTGTTAAAGAG 724 |||||||||||||||||||||||||||||||| || | || || ||||| Sbjct 592 GGGTTTTGAGCGGCTATCTACTTTTGATTTCG----AA---A----GA---ATT-AAGAG 636 Query 725 TCTGGTATTCTGAAGAGCTGTCTGTGGGGGAGCTTCTGGTTTGGGGGGTAAGGGCTCTGG 784 |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 637 TCTGGTATTCTGAAGAGCTG--TGTGGGGGAGCTTCTGGTTTTGGGGGTAAGGGCTCTGG 694 Query 785 TGGAAACTCGTGATATCTTTAGTATGATGGCCATAACTTGATATAGCATTTGGTTCCGTG 844 |||||| |||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 695 TGGAAATTCGTGATATCTTTAGTATGATGGCCATAACTTGATATAGCATTTGGTT-CGAC 753 Query 845 TGTCAACTTAGTGTAGTAGTAACTGAGCAGCTGGAAGCTTACAAAGGCGACAAATCGGTA 904 ||||||||||||||||||||||||||||||||||||||||||||| | | ||||| Sbjct 754 TGTCAACTTAGTGTAGTAGTAACTGAGCAGCTGGAAGCTTACAAA-G-G------CGGTA 805 Query 905 GTAGAAAATATTCAAGCAGCTTGCAGTTTGAGGTGTACAACTTGTTTTTCTCTTTGCGTT 964 || ||||| ||| ||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 806 GTCGAAAA-ATTTAAGCAGCCTGCAGTTTGAGGTGTACAACTTGTTTTTCTCTTTGTGTT 864 Query 965 TCCTTTTTTACGTTTGCACGGGTTTTCTGATGCAGAACAATCAGTTTCCTCACTTCTCAG 1024 | | |||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 865 T-CGCTTTTACCTTTGCACGGGTTTTCTGATGCAGAACAATCAGTTTCCTCACTTCTCAG 923 Query 1025 ATGAAGTGGGTGACAGAAATATGCACAACCCGTATGCATCAGGGTCATCCTATGATGCTT 1084 |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| Sbjct 924 ATGAAGTGGGTGACAGAAATATGCACAATCCGTATGCATCAGGGTCATCCTTTGATGCTT 983 Query 1085 TGTTCCCACCATGTGCAAAGTTGCCATACCATGGTGTTGAACTTCAACCGTCTGCGGTCT 1144 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 984 TGTTCCCACCATGTGCAAAGTTGCCATACCATGGTGTTGAACTTCAACCGTCTGCGGTCT 1043 Query 1145 GTCCAAAGAACTTTGTCATCTTCGATCAAACATATGACCGCAGCCAAGTGATGTACCATC 1204 |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1044 GTCCAAAGAATTTTGTCATCTTCGATCAAACGTATGACCGCAGCCAAGTGATGTACCATC 1103 Query 1205 CTGAGCTGACTCATAAGCTCATGAATACCCCTTCGTTGAACAATTTAGCTTCGACGTTTC 1264 ||| ||||||||| ||||||||||||||||| || |||||||||||||||||||| |||| Sbjct 1104 CTGGGCTGACTCACAAGCTCATGAATACCCCATCATTGAACAATTTAGCTTCGACATTTC 1163 Query 1265 AGAACGAGTA-TGTTGGGGGAAGTTATGGTAACTATGGTAACTATGAGCAAGAAGTATCC 1323 |||||||||| | | |||||||||||||||||||||||||||||||| ||||||| |||| Sbjct 1164 AGAACGAGTACTCT-GGGGGAAGTTATGGTAACTATGGTAACTATGACCAAGAAGCATCC 1222 Query 1324 TCTTCTTATCAAGAAGATCCAAATGAGATCGATGCTCTCTTGAGCGCAGATGAAGATTAT 1383 |||||||||||||| ||||| |||||||| ||||| ||||||||||||||||| |||||| Sbjct 1223 TCTTCTTATCAAGAGGATCCGAATGAGATTGATGCCCTCTTGAGCGCAGATGAGGATTAT 1282 Query 1384 GAAGAGAATGATGATAATGAAGGTGAAGAGGATGGTGGTGATTCAGAAGAAGTCAGCACT 1443 ||||| |||||||||||||||||| |||||||||| |||||||||| ||||||||| Sbjct 1283 GAAGA---TGATGATAATGAAGGTGATGAGGATGGTG---ATTCAGAAGAGGTCAGCACT 1336 Query 1444 GCTCGTACTTCTTCCAGGGATTATGGAAACACCACAGCAGAATCTTGTTGTTCCAGTTAT 1503 ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||| Sbjct 1337 GCTCGTAATTCTTCCAGGGATTATGGAAACACCTCAGCAGAATCTTGTTGTTCCAGCTAT 1396 Query 1504 GGTTacaacaacaacaacaacaacaacTCAAGGAAGCAGAGTTTATCGGGCAGTGCTAGT 1563 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1397 GGGTATAACAACAACAACAACAACAACTCAAGGAAGCAGAGTTTATCGGGCAGTGCTAGT 1456 Query 1564 AGTAGTAACAATGATGGGAAAGGACGTAAAAAGATGAAGAAGATGATGGGAGTATTGAGG 1623 |||| | |||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 1457 AGTA--A-CAATGATGGGAAAGGACGGAAAAAGATGAAGAAGATGATGGGAGTGTTGAGG 1513 Query 1624 AGAATTGTCCCTGGAGGAGAACAGATGAATACAGCTTGCGTTCTTGATGAAGCTGTTCAG 1683 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1514 AGAATTGTCCCGGGAGGAGAACAGATGAATACAGCTTGCGTTCTTGATGAAGCTGTTCAG 1573 Query 1684 TATCTCAAGTCACTTAAAATCGAAGCTCAGAAACTTGGCGTTGGACATTTCTCAAACCAA 1743 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1574 TATCTCAAGTCACTTAAAATCGAAGCACAGAAACTTGGCGTTGGACATTTCTCAAACCAA 1633 Query 1744 TCTTGAATGCTACCGATATTCGGTTCTTCCATCACTATTGTTTCT-CGGGAGGTAAATCA 1802 ||||||||||||| ||||||| |||||||| ||||||||||||| || |||||||||| Sbjct 1634 CCTTGAATGCTACCAATATTCG-TTCTTCCACCACTATTGTTTCTTCGA-AGGTAAATCA 1691 Query 1803 TCGGTCTAGCGCT-ATCTGGACCTTTCTCT-T-TATTTTCCTCCCTCTATACTCACTTCC 1859 |||||| |||||| |||||||||||||||| | ||| |||||||||||| ||| ||||| Sbjct 1692 TCGGTCCAGCGCTTATCTGGACCTTTCTCTCTCTATATTCCTCCCTCTA--CTCTCTTCC 1749 Query 1860 TTTTGTTGGCAGGATGGTATCTATTTTATGTTTGAATCTCTCTATGTATTTTGCTTTTTG 1919 ||||| |||||||||||||| |||||||| |||||||||| | |||||||||||| | Sbjct 1750 TTTTG----CAGGATGGTATCTACTTTATGTT-GAATCTCTCT-TATATTTTGCTTTT-G 1802 Query 1920 TGTGTTACTGCTTCGATGAAGAAGCAAG-GTTTGAACAAGTACTTGTGGATTTGATTTG 1977 ||| | | ||||||||||||||||| | ||||| |||||||||||||||||||||||| Sbjct 1803 TGT-T-ATTGCTTCGATGAAGAAGCT-GTGTTTGCACAAGTACTTGTGGATTTGATTTG 1858 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80179965725 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5