BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29960.1
Length=935
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313641 jgi|Araly1|313641|fgenesh1_pm.C_scaffold_1002421 782 0.0
> Ahg313641 jgi|Araly1|313641|fgenesh1_pm.C_scaffold_1002421
Length=510
Score = 782 bits (423), Expect = 0.0
Identities = 483/512 (94%), Gaps = 4/512 (1%)
Strand=Plus/Plus
Query 107 ATGGCGACTCCGTCGTCGTCTTTCTGGAACACAGCTTCACGAGAAGCCATGAAAAGCGGC 166
|||| | ||| |||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 ATGGTGTCTCTGTCGTCATCTTTCTGGACCACAGCTTCACGAGAAGCCATGAAAAGCGGC 60
Query 167 GTG-TTACTCGCGAAACTCTACTGCTTTCTTCATGTAACAACAAACTATCTCGGATTCAT 225
||| ||| | ||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 61 GTGTTTA-TTGCGAAACTCTACTGCTTCCTCCATGTAACAACAAACTATCTCGGATTCAT 119
Query 226 GGCTTATGCTTATGGTCCGAGCATGACTCCGACGCTTCATCCTTCGGGAAATGTGTTATT 285
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 120 GGCTTATGCTTATGGTCCGAGCATGACTCCGACGCTTCATCCTTCGGGGAATGTGTTATT 179
Query 286 AGCGGAGAGAATCTCGAAGCGGTATCAGAAACCGAGTCGTGGAGATATAGTTGTGATACG 345
||| |||||||| || |||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 180 AGCTGAGAGAATTTCTAAGCGGTATCGGAAACCAAGTCGTGGAGATATAGTTGTGATACG 239
Query 346 ATCTCCAGAAAACCCTAATAAGACTCCAATTAAAAGAGTTATTGGTATTGAAGGTGATTG 405
||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||
Sbjct 240 ATCTCCAGAAAACCCTAATAAGACTCCGATTAAGAGAGTTGTTGGTATTGAAGGTGATTG 299
Query 406 TATAAGCTTTGTGATTGATTCAAG-GAAGAGTGATGAATCTCAAACCATTGTGGTTCCTA 464
||||||||||||| |||| || || |||||||||| ||||||||||||||||||||||||
Sbjct 300 TATAAGCTTTGTGGTTGA-TCCAGTGAAGAGTGATAAATCTCAAACCATTGTGGTTCCTA 358
Query 465 AAGGACATGTCTTTGTTCAAGGTGACTATACTCATAACTCACGAGACTCAAGAAACTTTG 524
||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 359 AAGGACATGTCTTCGTTCAAGGTGACTATACTCATAACTCAAGAGACTCAAGAACCTTTG 418
Query 525 GTACTGTACCTTACGGTCTTATTCAAGGCAGAGTGCTTTGGAGGGTTTGGCCATTTCAAG 584
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GTCCTGTACCTTATGGTCTTATTCAAGGCAGAGTGCTTTGGAGGGTTTGGCCATTTCAAG 478
Query 585 ATTTTGGACCGCTTGGACCAACCCCAACTTAG 616
||||||||||||||||||||||||||||||||
Sbjct 479 ATTTTGGACCGCTTGGACCAACCCCAACTTAG 510
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34691854470
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5