BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29962.1
Length=558
Score E
Sequences producing significant alignments: (Bits) Value
Ahg336095 jgi|Araly1|336095|fgenesh1_pg.C_scaffold_1002660 719 0.0
> Ahg336095 jgi|Araly1|336095|fgenesh1_pg.C_scaffold_1002660
Length=660
Score = 719 bits (389), Expect = 0.0
Identities = 490/539 (91%), Gaps = 5/539 (1%)
Strand=Plus/Plus
Query 1 ATGAAACCCAAGAAAACCAAAGGAAAACAAAGGATTAACATCAAGAAAATTGAAAAAGAC 60
||||| |||||||||||||||||||| |||| ||||| ||||||||||||||||||||||
Sbjct 1 ATGAATCCCAAGAAAACCAAAGGAAAGCAAAAGATTACCATCAAGAAAATTGAAAAAGAC 60
Query 61 GAAGACAGATTGGTCACATTGTCTAAGCGTCGAAATGGTATCTACACTAAACTCAGTGAG 120
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 61 GAAGACAGATTGGTCACATTGTCTAAGCGTCGAAATGGTATCTACACTAAGCTCAGCGAG 120
Query 121 CTTTCCATTCTCTGTGGTGCTGAAGTTGCGTTTCTCGGGTATTCTTGCTCTGGAAAACCA 180
|||||||||||||| || ||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 121 CTTTCCATTCTCTGCGGCGCTGAAGTTGCGTTTCTCGGGTACTCTTGCTCCGGAAAGCCT 180
Query 181 TACACATTCGGCAGTCCGTCCTTCCAAGCCGTGGCAGAGCGGTTTCTCAACGGCGAGGCC 240
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 181 TACACATTCGGCAGCCCATCCTTCCAAGCCGTGGCAGAGCGGTTTCTCAACGGCGAGTCC 240
Query 241 TCGTCGTCTTCTTCATCATCGTTGCAACGATCGGTCATGAATGCTCATCAGCAAGCGAAG 300
|| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 241 TCCTCGTCTTCTTCATC---GTTGCAACGATCGGTCATGAATGCTCACCAGCAAGCGAAG 297
Query 301 ATTCAAGAGCTTTGCAAAGTATACAATAGATTGGTGGAGGAGATAACGGTGGAAGAAGTC 360
|||||||||||||||||||||||||| ||| |||||||| || || || ||||||||||
Sbjct 298 ATTCAAGAGCTTTGCAAAGTATACAACAGAATGGTGGAGAAGGCAAAGGCGGAAGAAGTC 357
Query 361 AAATTAAAGAAGACGGCTGCATTGGCGGAGATGATGCCCATGAATGAGGATGCGTGGTGG 420
||| |||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 358 AAAGTAAAGAAGGCGGCTGCATTGGCGGAGAAGATGCCCTTGAATGAGGATGCGTGGTGG 417
Query 421 AAAGTGGATCCAAATGACGTGAAGGATCGCGAAGAGGTGAAGAAGATGA-TGGAGAAGCA 479
|||||||||||||| || |||||||||| ||||||| ||||||||| | |||| |||
Sbjct 418 AAAGTGGATCCAAAGGAGGTGAAGGATCATGAAGAGGCGAAGAAGAT-ACTGGAAAAGTG 476
Query 480 TCAAGAGCTCTATGAGAAACTGTGCGAGGAAGCTGCTTCAAGGATCAAGAGAGGACATG 538
| ||| |||||||||||||||||| || ||||||||| |||||||| |||| ||| |||
Sbjct 477 TGAAGGGCTCTATGAGAAACTGTGTGACGAAGCTGCTGCAAGGATCCAGAGGGGAGATG 535
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20375084526
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5