BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29965.1
Length=774
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473214 jgi|Araly1|473214|fgenesh2_kg.1__3168__AT1G29970.2 808 0.0
Ahg895482 jgi|Araly1|895482|Al_scaffold_0006_3478 215 4e-55
> Ahg473214 jgi|Araly1|473214|fgenesh2_kg.1__3168__AT1G29970.2
Length=966
Score = 808 bits (437), Expect = 0.0
Identities = 494/522 (95%), Gaps = 2/522 (0%)
Strand=Plus/Plus
Query 108 CACCAGTACCAAGTCGTAGGACGAGCTCTCCCGACGGAGAAAGATGAGCAACCAAAGATT 167
||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||
Sbjct 446 CACCAGTACCAAGTCGTAGGAAGAGCTCTCCCGACGGAGAAAGATGAGCAGCCGAAGATC 505
Query 168 TACAGGATGAAGCTATGGGCAACGAACGAGGTTCTTGCCAAATCCAAGTTCTGGTACTAC 227
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 506 TACAGGATGAAGCTTTGGGCTACGAACGAGGTTCTTGCCAAATCCAAGTTCTGGTACTTC 565
Query 228 TTAAGGAGGCAAAAGAAGGTGAAGAAGAGTAATGGACAGATGCTAGCCATCAACGAGATC 287
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 566 TTAAGGAGGCAAAAGAAGGTGAAGAAGAGTAATGGACAGATGTTAGCTATCAACGAGATC 625
Query 288 TTTGAGAAGAACCCAACAACGATCAAGAATTTTGGAATCTGGTTGAGATACCAGAGCCGT 347
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 626 TTTGAGAAGAACCCAACAACGATCAAGAATTTTGGAATCTGGTTGAGATACCAGAGTCGT 685
Query 348 ACAGGTTACCATAACATGTACAAAGAGTACCGTGACACTACTTTGAATGGAGCAGTGGAG 407
|| |||||||||||||||||||| |||| |||||||| |||||||| ||||||||||||
Sbjct 686 ACTGGTTACCATAACATGTACAAGGAGTTTCGTGACACAACTTTGAACGGAGCAGTGGAG 745
Query 408 CAAATGTACACTGAGATGGCGTCAAGACACAGAGTAAGGTTCCCTTGCATTCAGATTATT 467
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 746 CAAATGTACACTGAGATGGCGTCAAGACACAGAGTCAGGTTCCCTTGCATTCAGATTATC 805
Query 468 AAGACAGCAACAGTCCCAGCC-TCTCTCTGCAAGAGGGAAAGCACGAAGCAGTTTCACAA 526
|||||||| |||||||||||| | ||||||||||| || ||||| ||||||||||| ||
Sbjct 806 AAGACAGCTACAGTCCCAGCCAAC-CTCTGCAAGAGAGAGAGCACTAAGCAGTTTCATAA 864
Query 527 CAGCAAGATCAAGTTCCCGTTGGTCTTCAGGAAGGTTAGACCTCCCACCAGAAAGCTCAA 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 865 CAGCAAGATCAAGTTCCCGTTGGTCTTCAGGAAGGTTAGACCTCCCACCAGAAAGCTCAA 924
Query 587 GACTACCTTCAAGGCCAACAAGCCTAACTTGTTTATGTAGAA 628
|||||||||||||||| ||||||||||||||||||||||||
Sbjct 925 GACTACCTTCAAGGCCTCCAAGCCTAACTTGTTTATGTAGAA 966
> Ahg895482 jgi|Araly1|895482|Al_scaffold_0006_3478
Length=171
Score = 215 bits (116), Expect = 4e-55
Identities = 155/173 (90%), Gaps = 5/173 (3%)
Strand=Plus/Plus
Query 90 ATGAGTGTTATCAGGCTGCACCAGTACCAAGTCGTAGGACGAGCTCTCCCGACGGAGAAA 149
||| ||||| ||||||| ||||||||||||||||| | | ||||||||||||||||| ||
Sbjct 1 ATGGGTGTTTTCAGGCTTCACCAGTACCAAGTCGTCGTAAGAGCTCTCCCGACGGAG-AA 59
Query 150 G-ATGAGCAACCAAAGATTTACAGGATGAAGCTATGGGCA-ACGAACGAGGTTCTTGCCA 207
| ||||||| || |||||||||| ||||||||| ||| || |||||||||||||||||||
Sbjct 60 GAATGAGCAGCCGAAGATTTACATGATGAAGCTCTGGACAGACGAACGAGGTTCTTGCCA 119
Query 208 AATCCAAGTTCTGGTACTACTTAAGGAGGCAAAAGAAGGTGAAGA-AGAGTAA 259
|||||||||||||||||| |||||||||||| ||||||||||||| | |||||
Sbjct 120 AATCCAAGTTCTGGTACTTCTTAAGGAGGCAGAAGAAGGTGAAGATA-AGTAA 171
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28554064833
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5