BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G29965.1 Length=774 Score E Sequences producing significant alignments: (Bits) Value Ahg473214 jgi|Araly1|473214|fgenesh2_kg.1__3168__AT1G29970.2 808 0.0 Ahg895482 jgi|Araly1|895482|Al_scaffold_0006_3478 215 4e-55 > Ahg473214 jgi|Araly1|473214|fgenesh2_kg.1__3168__AT1G29970.2 Length=966 Score = 808 bits (437), Expect = 0.0 Identities = 494/522 (95%), Gaps = 2/522 (0%) Strand=Plus/Plus Query 108 CACCAGTACCAAGTCGTAGGACGAGCTCTCCCGACGGAGAAAGATGAGCAACCAAAGATT 167 ||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||| Sbjct 446 CACCAGTACCAAGTCGTAGGAAGAGCTCTCCCGACGGAGAAAGATGAGCAGCCGAAGATC 505 Query 168 TACAGGATGAAGCTATGGGCAACGAACGAGGTTCTTGCCAAATCCAAGTTCTGGTACTAC 227 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| | Sbjct 506 TACAGGATGAAGCTTTGGGCTACGAACGAGGTTCTTGCCAAATCCAAGTTCTGGTACTTC 565 Query 228 TTAAGGAGGCAAAAGAAGGTGAAGAAGAGTAATGGACAGATGCTAGCCATCAACGAGATC 287 |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| Sbjct 566 TTAAGGAGGCAAAAGAAGGTGAAGAAGAGTAATGGACAGATGTTAGCTATCAACGAGATC 625 Query 288 TTTGAGAAGAACCCAACAACGATCAAGAATTTTGGAATCTGGTTGAGATACCAGAGCCGT 347 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 626 TTTGAGAAGAACCCAACAACGATCAAGAATTTTGGAATCTGGTTGAGATACCAGAGTCGT 685 Query 348 ACAGGTTACCATAACATGTACAAAGAGTACCGTGACACTACTTTGAATGGAGCAGTGGAG 407 || |||||||||||||||||||| |||| |||||||| |||||||| |||||||||||| Sbjct 686 ACTGGTTACCATAACATGTACAAGGAGTTTCGTGACACAACTTTGAACGGAGCAGTGGAG 745 Query 408 CAAATGTACACTGAGATGGCGTCAAGACACAGAGTAAGGTTCCCTTGCATTCAGATTATT 467 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 746 CAAATGTACACTGAGATGGCGTCAAGACACAGAGTCAGGTTCCCTTGCATTCAGATTATC 805 Query 468 AAGACAGCAACAGTCCCAGCC-TCTCTCTGCAAGAGGGAAAGCACGAAGCAGTTTCACAA 526 |||||||| |||||||||||| | ||||||||||| || ||||| ||||||||||| || Sbjct 806 AAGACAGCTACAGTCCCAGCCAAC-CTCTGCAAGAGAGAGAGCACTAAGCAGTTTCATAA 864 Query 527 CAGCAAGATCAAGTTCCCGTTGGTCTTCAGGAAGGTTAGACCTCCCACCAGAAAGCTCAA 586 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 865 CAGCAAGATCAAGTTCCCGTTGGTCTTCAGGAAGGTTAGACCTCCCACCAGAAAGCTCAA 924 Query 587 GACTACCTTCAAGGCCAACAAGCCTAACTTGTTTATGTAGAA 628 |||||||||||||||| |||||||||||||||||||||||| Sbjct 925 GACTACCTTCAAGGCCTCCAAGCCTAACTTGTTTATGTAGAA 966 > Ahg895482 jgi|Araly1|895482|Al_scaffold_0006_3478 Length=171 Score = 215 bits (116), Expect = 4e-55 Identities = 155/173 (90%), Gaps = 5/173 (3%) Strand=Plus/Plus Query 90 ATGAGTGTTATCAGGCTGCACCAGTACCAAGTCGTAGGACGAGCTCTCCCGACGGAGAAA 149 ||| ||||| ||||||| ||||||||||||||||| | | ||||||||||||||||| || Sbjct 1 ATGGGTGTTTTCAGGCTTCACCAGTACCAAGTCGTCGTAAGAGCTCTCCCGACGGAG-AA 59 Query 150 G-ATGAGCAACCAAAGATTTACAGGATGAAGCTATGGGCA-ACGAACGAGGTTCTTGCCA 207 | ||||||| || |||||||||| ||||||||| ||| || ||||||||||||||||||| Sbjct 60 GAATGAGCAGCCGAAGATTTACATGATGAAGCTCTGGACAGACGAACGAGGTTCTTGCCA 119 Query 208 AATCCAAGTTCTGGTACTACTTAAGGAGGCAAAAGAAGGTGAAGA-AGAGTAA 259 |||||||||||||||||| |||||||||||| ||||||||||||| | ||||| Sbjct 120 AATCCAAGTTCTGGTACTTCTTAAGGAGGCAGAAGAAGGTGAAGATA-AGTAA 171 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28554064833 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5